ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32k21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MDFI_HUMAN (Q99750) MyoD family inhibitor (Myogenic repressor I-mf) 30 4.3
2PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 ... 29 9.5

>MDFI_HUMAN (Q99750) MyoD family inhibitor (Myogenic repressor I-mf)|
          Length = 246

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -2

Query: 208 QQCCIVAAVKFCLLMFVWTLSFLCGASLECVKCGAYTIMPVASCCLSHNVGRC 50
           Q+ C V  +  CL     TL   C   L+C  CG+ +      CC     G C
Sbjct: 160 QEDCCVHCILSCLFCEFLTL---CNIVLDCATCGSCSSEDSCLCCCCCGSGEC 209



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>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 459

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 500 GXHRARYSDSHDSKRSRYDDSY 435
           G HR RY D  DS+  R +DSY
Sbjct: 410 GLHRNRYRDRSDSRSPRREDSY 431


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,655,780
Number of Sequences: 219361
Number of extensions: 1188780
Number of successful extensions: 2349
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2349
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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