ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32k16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4,... 377 e-101
2emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4,... 377 e-101
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 377 e-101
4dbj|AK067832.1| Oryza sativa (japonica cultivar-group) cDNA clon... 377 e-101
5ref|XM_473465.1| Oryza sativa (japonica cultivar-group), predic... 371 2e-99
6gb|AF296824.1|AF296824 Zea mays genetic modifier (isr) mRNA, com... 317 3e-83
7gb|AF466202.2| Zea mays putative pol protein gene, partial cds; ... 317 3e-83
8gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ... 260 5e-66
9gb|AC004694.1| Homo sapiens BAC clone CTB-152H24 from 7, complet... 42 2.3
10gb|AC010007.4| Drosophila melanogaster 3L BAC RP98-17K17 (Roswel... 42 2.3
11gb|AC091128.2| Drosophila melanogaster 3L BAC RP98-17O7 (Roswell... 42 2.3
12gb|AE003471.3| Drosophila melanogaster chromosome 3L, section 5 ... 42 2.3
13gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s... 42 2.3
14gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
15gb|AC116500.13| Mus musculus chromosome 5, clone RP24-297N9, com... 40 9.1
16gb|AY658640.1| Synthetic construct Peudomonas aeruginosa clone F... 40 9.1
17gb|AE006695.1| Sulfolobus solfataricus P2 section 54 of 272 of t... 40 9.1
18emb|AL096861.9|HSDJ824H1 Human DNA sequence from clone RP5-824H1... 40 9.1
19emb|Y18930.1|SSU18930 Sulfolobus solfataricus 281 kb genomic DNA... 40 9.1
20emb|AL731643.4|OSJN00284 Oryza sativa genomic DNA, chromosome 4,... 40 9.1
21emb|AL731668.6| Mouse DNA sequence from clone RP23-430C13 on chr... 40 9.1
22gb|AY521771.1| Australembia nodosa voucher BYU_ACEB008 28S ribos... 40 9.1
23gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, com... 40 9.1
24gb|AC006435.7|AC006435 Homo sapiens chromosome 17, clone RP5-59D... 40 9.1
25dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
27gb|AE004472.1| Pseudomonas aeruginosa PAO1, section 33 of 529 of... 40 9.1
28dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
29dbj|AP005461.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
30dbj|AK112587.1| Ciona intestinalis cDNA, clone:cieg004b10, full ... 40 9.1
31gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
32emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4,... 40 9.1
33gb|AC162442.19| Mus musculus chromosome 1, clone RP24-178O17, co... 40 9.1
34emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chr... 40 9.1

>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17,
            complete sequence
          Length = 167269

 Score =  377 bits (190), Expect = e-101
 Identities = 408/481 (84%), Gaps = 6/481 (1%)
 Strand = Plus / Minus

                                                                        
Query: 171  agaaacatcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccc 224
            ||||| ||||||||||||||||||||||||||||||||||      ||||  ||||||||
Sbjct: 6231 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 6172

                                                                        
Query: 225  tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 284
            || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| |
Sbjct: 6171 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 6112

                                                                        
Query: 285  gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 344
            ||||||| ||||||||||||||||| || || |||||||||||||  |||||||||||||
Sbjct: 6111 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 6052

                                                                        
Query: 345  ccacacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatca 404
            | ||||||||||||||||||||||| ||||| |   | ||| | |||||| |||||| ||
Sbjct: 6051 caacacacctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagca 5992

                                                                        
Query: 405  caagacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccct 464
            ||||||| |||||||||||||||||||| ||  ||||||  |||||||||||||| ||||
Sbjct: 5991 caagacaaacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccct 5932

                                                                        
Query: 465  cgggtttccctcggtggaagtcctccgccgccactatgacatcgaaatagccttgcagac 524
            ||||||||||||||  ||| ||||| || ||||||||  |||| || |||||||| ||||
Sbjct: 5931 cgggtttccctcggcagaaatcctctgctgccactatagcatcaaagtagccttgaagac 5872

                                                                        
Query: 525  caacggcttttatgctttcttccaggctcattctggggcgagaagccgttactgctattg 584
            |||| |||||||| | |||||| |||||||  |  ||||||| ||  || | ||||||||
Sbjct: 5871 caacagcttttatcccttcttctaggctcaaccgtgggcgaggagttgtgattgctattg 5812

                                                                        
Query: 585  gaatgtcagaatccacaagggtgttcaagaagtcgagaacacctggccgcagctgataga 644
            |||||||| |||||||||||||||||| ||| || ||||||||||| ||||| || ||||
Sbjct: 5811 gaatgtcaaaatccacaagggtgttcaggaaatcaagaacacctggtcgcagttggtaga 5752

             
Query: 645  a 645
            |
Sbjct: 5751 a 5751



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>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
              complete sequence
          Length = 127506

 Score =  377 bits (190), Expect = e-101
 Identities = 408/481 (84%), Gaps = 6/481 (1%)
 Strand = Plus / Minus

                                                                          
Query: 171    agaaacatcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccc 224
              ||||| ||||||||||||||||||||||||||||||||||      ||||  ||||||||
Sbjct: 112050 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 111991

                                                                          
Query: 225    tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 284
              || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| |
Sbjct: 111990 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 111931

                                                                          
Query: 285    gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 344
              ||||||| ||||||||||||||||| || || |||||||||||||  |||||||||||||
Sbjct: 111930 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 111871

                                                                          
Query: 345    ccacacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatca 404
              | ||||||||||||||||||||||| ||||| |   | ||| | |||||| |||||| ||
Sbjct: 111870 caacacacctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagca 111811

                                                                          
Query: 405    caagacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccct 464
              ||||||| |||||||||||||||||||| ||  ||||||  |||||||||||||| ||||
Sbjct: 111810 caagacaaacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccct 111751

                                                                          
Query: 465    cgggtttccctcggtggaagtcctccgccgccactatgacatcgaaatagccttgcagac 524
              ||||||||||||||  ||| ||||| || ||||||||  |||| || |||||||| ||||
Sbjct: 111750 cgggtttccctcggcagaaatcctctgctgccactatagcatcaaagtagccttgaagac 111691

                                                                          
Query: 525    caacggcttttatgctttcttccaggctcattctggggcgagaagccgttactgctattg 584
              |||| |||||||| | |||||| |||||||  |  ||||||| ||  || | ||||||||
Sbjct: 111690 caacagcttttatcccttcttctaggctcaaccgtgggcgaggagttgtgattgctattg 111631

                                                                          
Query: 585    gaatgtcagaatccacaagggtgttcaagaagtcgagaacacctggccgcagctgataga 644
              |||||||| |||||||||||||||||| ||| || ||||||||||| ||||| || ||||
Sbjct: 111630 gaatgtcaaaatccacaagggtgttcaggaaatcaagaacacctggtcgcagttggtaga 111571

               
Query: 645    a 645
              |
Sbjct: 111570 a 111570



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  377 bits (190), Expect = e-101
 Identities = 408/481 (84%), Gaps = 6/481 (1%)
 Strand = Plus / Minus

                                                                            
Query: 171      agaaacatcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccc 224
                ||||| ||||||||||||||||||||||||||||||||||      ||||  ||||||||
Sbjct: 27843378 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 27843319

                                                                            
Query: 225      tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 284
                || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| |
Sbjct: 27843318 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 27843259

                                                                            
Query: 285      gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 344
                ||||||| ||||||||||||||||| || || |||||||||||||  |||||||||||||
Sbjct: 27843258 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 27843199

                                                                            
Query: 345      ccacacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatca 404
                | ||||||||||||||||||||||| ||||| |   | ||| | |||||| |||||| ||
Sbjct: 27843198 caacacacctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagca 27843139

                                                                            
Query: 405      caagacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccct 464
                ||||||| |||||||||||||||||||| ||  ||||||  |||||||||||||| ||||
Sbjct: 27843138 caagacaaacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccct 27843079

                                                                            
Query: 465      cgggtttccctcggtggaagtcctccgccgccactatgacatcgaaatagccttgcagac 524
                ||||||||||||||  ||| ||||| || ||||||||  |||| || |||||||| ||||
Sbjct: 27843078 cgggtttccctcggcagaaatcctctgctgccactatagcatcaaagtagccttgaagac 27843019

                                                                            
Query: 525      caacggcttttatgctttcttccaggctcattctggggcgagaagccgttactgctattg 584
                |||| |||||||| | |||||| |||||||  |  ||||||| ||  || | ||||||||
Sbjct: 27843018 caacagcttttatcccttcttctaggctcaaccgtgggcgaggagttgtgattgctattg 27842959

                                                                            
Query: 585      gaatgtcagaatccacaagggtgttcaagaagtcgagaacacctggccgcagctgataga 644
                |||||||| |||||||||||||||||| ||| || ||||||||||| ||||| || ||||
Sbjct: 27842958 gaatgtcaaaatccacaagggtgttcaggaaatcaagaacacctggtcgcagttggtaga 27842899

                 
Query: 645      a 645
                |
Sbjct: 27842898 a 27842898



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 267     caacagagagttgatcgagc 286
               ||||||||||||||||||||
Sbjct: 7635351 caacagagagttgatcgagc 7635332



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>dbj|AK067832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121O07, full
            insert sequence
          Length = 1499

 Score =  377 bits (190), Expect = e-101
 Identities = 408/481 (84%), Gaps = 6/481 (1%)
 Strand = Plus / Minus

                                                                        
Query: 171  agaaacatcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccc 224
            ||||| ||||||||||||||||||||||||||||||||||      ||||  ||||||||
Sbjct: 1228 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 1169

                                                                        
Query: 225  tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 284
            || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| |
Sbjct: 1168 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 1109

                                                                        
Query: 285  gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 344
            ||||||| ||||||||||||||||| || || |||||||||||||  |||||||||||||
Sbjct: 1108 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 1049

                                                                        
Query: 345  ccacacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatca 404
            | ||||||||||||||||||||||| ||||| |   | ||| | |||||| |||||| ||
Sbjct: 1048 caacacacctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagca 989

                                                                        
Query: 405  caagacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccct 464
            ||||||| |||||||||||||||||||| ||  ||||||  |||||||||||||| ||||
Sbjct: 988  caagacaaacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccct 929

                                                                        
Query: 465  cgggtttccctcggtggaagtcctccgccgccactatgacatcgaaatagccttgcagac 524
            ||||||||||||||  ||| ||||| || ||||||||  |||| || |||||||| ||||
Sbjct: 928  cgggtttccctcggcagaaatcctctgctgccactatagcatcaaagtagccttgaagac 869

                                                                        
Query: 525  caacggcttttatgctttcttccaggctcattctggggcgagaagccgttactgctattg 584
            |||| |||||||| | |||||| |||||||  |  ||||||| ||  || | ||||||||
Sbjct: 868  caacagcttttatcccttcttctaggctcaaccgtgggcgaggagttgtgattgctattg 809

                                                                        
Query: 585  gaatgtcagaatccacaagggtgttcaagaagtcgagaacacctggccgcagctgataga 644
            |||||||| |||||||||||||||||| ||| || ||||||||||| ||||| || ||||
Sbjct: 808  gaatgtcaaaatccacaagggtgttcaggaaatcaagaacacctggtcgcagttggtaga 749

             
Query: 645  a 645
            |
Sbjct: 748  a 748



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>ref|XM_473465.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1053

 Score =  371 bits (187), Expect = 2e-99
 Identities = 402/474 (84%), Gaps = 6/474 (1%)
 Strand = Plus / Minus

                                                                        
Query: 178  tcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccctgcgccc 231
            |||||||||||||||||||||||||||||||||      ||||  |||||||||| ||||
Sbjct: 1053 tcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccctgagccc 994

                                                                        
Query: 232  aagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagccatct 291
            ||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| ||||||||
Sbjct: 993  aagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaagccatct 934

                                                                        
Query: 292  cacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgccacaca 351
             ||||||||||||||||| || || |||||||||||||  |||||||||||||| |||||
Sbjct: 933  tacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccgcaacaca 874

                                                                        
Query: 352  cctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatcacaagaca 411
            |||||||||||||||||| ||||| |   | ||| | |||||| |||||| |||||||||
Sbjct: 873  cctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagcacaagaca 814

                                                                        
Query: 412  gacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccctcgggttt 471
             |||||||||||||||||||| ||  ||||||  |||||||||||||| |||||||||||
Sbjct: 813  aacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccctcgggttt 754

                                                                        
Query: 472  ccctcggtggaagtcctccgccgccactatgacatcgaaatagccttgcagaccaacggc 531
            |||||||  ||| ||||| || ||||||||  |||| || |||||||| |||||||| ||
Sbjct: 753  ccctcggcagaaatcctctgctgccactatagcatcaaagtagccttgaagaccaacagc 694

                                                                        
Query: 532  ttttatgctttcttccaggctcattctggggcgagaagccgttactgctattggaatgtc 591
            |||||| | |||||| |||||||  |  ||||||| ||  || | |||||||||||||||
Sbjct: 693  ttttatcccttcttctaggctcaaccgtgggcgaggagttgtgattgctattggaatgtc 634

                                                                  
Query: 592  agaatccacaagggtgttcaagaagtcgagaacacctggccgcagctgatagaa 645
            | |||||||||||||||||| ||| || ||||||||||| ||||| || |||||
Sbjct: 633  aaaatccacaagggtgttcaggaaatcaagaacacctggtcgcagttggtagaa 580



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>gb|AF296824.1|AF296824 Zea mays genetic modifier (isr) mRNA, complete cds
          Length = 1480

 Score =  317 bits (160), Expect = 3e-83
 Identities = 370/440 (84%)
 Strand = Plus / Minus

                                                                        
Query: 176  catcactcctcgatcacaatctccatgtccatgtcagattgtctgcccctgcgcccaaga 235
            ||||| ||||| |||||||| ||||| ||||||||||||| ||| |||||||| |||| |
Sbjct: 1218 catcattcctcaatcacaatttccatatccatgtcagattctctacccctgcgaccaata 1159

                                                                        
Query: 236  acctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagccatctcaca 295
            || || ||||| || |||||||||| |||||||| |||||| ||||| ||||||||||||
Sbjct: 1158 acttcaccattagcaagcctctgcaagtcaacaatagagagctgatcaagccatctcaca 1099

                                                                        
Query: 296  acatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgccacacacctc 355
            |||||||||||||  || || |||||||||||||| |||| |||||| ||||||||||||
Sbjct: 1098 acatggtttgctgattggagctcataggcagggtgtcggcctgcaactgccacacacctc 1039

                                                                        
Query: 356  atcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatcacaagacagaca 415
            ||||||||  |||||||||| | |||||||||||||||| |||| | ||||| |||| ||
Sbjct: 1038 atcccagcgttatgtgcagattccgtcgtcaagtttgagttaccaaacacaacacaggca 979

                                                                        
Query: 416  tcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccctcgggtttccct 475
            || || || |||||||| || || ||||| || |||||||||||||| || |||||||||
Sbjct: 978  tctggttccagaccaagttgctccgctgcgacttcaaacatctcaccatcaggtttccct 919

                                                                        
Query: 476  cggtggaagtcctccgccgccactatgacatcgaaatagccttgcagaccaacggctttt 535
              |  ||||||||||   || |||||  ||||||| ||||||||||||||||| | ||| 
Sbjct: 918  aagcagaagtcctccaatgcaactatagcatcgaagtagccttgcagaccaacagttttg 859

                                                                        
Query: 536  atgctttcttccaggctcattctggggcgagaagccgttactgctattggaatgtcagaa 595
            || | |||||| |||||| | || | ||||| ||| |  | |||||||||||||||| ||
Sbjct: 858  atcccttcttcaaggctcttccttgagcgaggagctgcaattgctattggaatgtcaaaa 799

                                
Query: 596  tccacaagggtgttcaagaa 615
             |||||||||||||||||||
Sbjct: 798  cccacaagggtgttcaagaa 779



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>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol
             precursor -orf2, putative Fourf gag/pol protein, putative
             NADP-dependent malic enzyme, putative argonaute protein,
             putative pinhead protein, putative pol protein, putative
             gag protein, putative TNP2, r1-B73 proteins, putative
             genetic modifier, putative S-receptor kinase, putative
             aldose reductase-related protein, putative glutathione
             peroxidase, putative glycerol 3-phosphate permease,
             putative response regulator, and putative 4-coumarate-CoA
             ligase-like protein genes, complete cds
          Length = 290350

 Score =  317 bits (160), Expect = 3e-83
 Identities = 370/440 (84%)
 Strand = Plus / Plus

                                                                         
Query: 176   catcactcctcgatcacaatctccatgtccatgtcagattgtctgcccctgcgcccaaga 235
             ||||| ||||| |||||||| ||||| ||||||||||||| ||| |||||||| |||| |
Sbjct: 91369 catcattcctcaatcacaatttccatatccatgtcagattctctacccctgcgaccaata 91428

                                                                         
Query: 236   acctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagccatctcaca 295
             || || ||||| || |||||||||| |||||||| |||||| ||||| ||||||||||||
Sbjct: 91429 acttcaccattagcaagcctctgcaagtcaacaatagagagctgatcaagccatctcaca 91488

                                                                         
Query: 296   acatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgccacacacctc 355
             |||||||||||||  || || |||||||||||||| |||| |||||| ||||||||||||
Sbjct: 91489 acatggtttgctgattggagctcataggcagggtgtcggcctgcaactgccacacacctc 91548

                                                                         
Query: 356   atcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatcacaagacagaca 415
             ||||||||  |||||||||| | |||||||||||||||| |||| | ||||| |||| ||
Sbjct: 91549 atcccagcgttatgtgcagattccgtcgtcaagtttgagttaccaaacacaacacaggca 91608

                                                                         
Query: 416   tcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccctcgggtttccct 475
             || || || |||||||| || || ||||| || |||||||||||||| || |||||||||
Sbjct: 91609 tctggttccagaccaagttgctccgctgcgacttcaaacatctcaccatcaggtttccct 91668

                                                                         
Query: 476   cggtggaagtcctccgccgccactatgacatcgaaatagccttgcagaccaacggctttt 535
               |  ||||||||||   || |||||  ||||||| ||||||||||||||||| | ||| 
Sbjct: 91669 aagcagaagtcctccaatgcaactatagcatcgaagtagccttgcagaccaacagttttg 91728

                                                                         
Query: 536   atgctttcttccaggctcattctggggcgagaagccgttactgctattggaatgtcagaa 595
             || | |||||| |||||| | || | ||||| ||| |  | |||||||||||||||| ||
Sbjct: 91729 atcccttcttcaaggctcttccttgagcgaggagctgcaattgctattggaatgtcaaaa 91788

                                 
Query: 596   tccacaagggtgttcaagaa 615
              |||||||||||||||||||
Sbjct: 91789 cccacaagggtgttcaagaa 91808



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>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
             hypothetical protein, putative NAM protein, putative
             cis-zeatin O-glucosyltransferases, putative small nuclear
             ribonucleoprotein, putative cis-zeatin
             O-glucosyltransferase, putative glutathione peroxidase,
             putative copper-exporting ATPases, putative
             serine/threonine dehydratase, and putative actin
             depolymerizing factor genes, complete cds; and
             hypothetical protein gene, partial cds
          Length = 157237

 Score =  260 bits (131), Expect = 5e-66
 Identities = 276/323 (85%), Gaps = 1/323 (0%)
 Strand = Plus / Plus

                                                                         
Query: 168   tgcagaaacatcactcctcgatcacaatctccatgtccatgtcagattgtctgcccctgc 227
             ||||||| ||||| |||||||||||||| ||||| ||||||||||||| ||| |||||||
Sbjct: 48028 tgcagaagcatcattcctcgatcacaatttccatatccatgtcagattctctacccctgc 48087

                                                                         
Query: 228   gcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagcc 287
             | |||| ||| || ||||| || |||||||||| |||||||| ||||| ||| || ||||
Sbjct: 48088 gaccaataacttcaccattagcaagcctctgcaagtcaacaatagagaattggtcaagcc 48147

                                                                         
Query: 288   atctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgcca 347
             |||||||||||||| ||||||| || || |||||||||||||| |||| |||||| ||||
Sbjct: 48148 atctcacaacatggcttgctgcttggagctcataggcagggtgtcggcctgcaactgcca 48207

                                                                         
Query: 348   cacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatcacaa 407
             |||||||||||| |||  |||||||||| | |||||||||||||||| |||| | |||||
Sbjct: 48208 cacacctcatcctagcgttatgtgcagattccgtcgtcaagtttgagttaccaaacacaa 48267

                                                                         
Query: 408   gacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccctcgg 467
              ||| ||||| ||||| |||| ||| || |||||  | ||||||||||||||||| || |
Sbjct: 48268 -acaaacatctggctccagactaagttgctctgccacgacctcaaacatctcaccatcag 48326

                                    
Query: 468   gtttccctcggtggaagtcctcc 490
             |||||||| ||  ||||||||||
Sbjct: 48327 gtttccctaggcagaagtcctcc 48349



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                         
Query: 577   tgctattggaatgtcagaatccacaagggtgttcaagaagtcgagaacacctggccgcag 636
             |||||||||||||||  || ||||||| ||||||||||| || || |||||| | |||||
Sbjct: 48436 tgctattggaatgtccaaacccacaagcgtgttcaagaaatcaagcacacctagtcgcag 48495

                
Query: 637   ctg 639
             |||
Sbjct: 48496 ctg 48498



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>gb|AC004694.1| Homo sapiens BAC clone CTB-152H24 from 7, complete sequence
          Length = 63749

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 106   cacaaaatgtaatgcagtact 126
             |||||||||||||||||||||
Sbjct: 56083 cacaaaatgtaatgcagtact 56103



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>gb|AC010007.4| Drosophila melanogaster 3L BAC RP98-17K17 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 175481

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    tttagttatgcattacaagaa 57
             |||||||||||||||||||||
Sbjct: 66613 tttagttatgcattacaagaa 66633



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>gb|AC091128.2| Drosophila melanogaster 3L BAC RP98-17O7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170465

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 37     tttagttatgcattacaagaa 57
              |||||||||||||||||||||
Sbjct: 167140 tttagttatgcattacaagaa 167160



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>gb|AE003471.3| Drosophila melanogaster chromosome 3L, section 5 of 83 of the complete
             sequence
          Length = 302131

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    tttagttatgcattacaagaa 57
             |||||||||||||||||||||
Sbjct: 53355 tttagttatgcattacaagaa 53375



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>gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s DS03179 (D226), DS06357 (D230),
              DS03404 (D231), DS06962 (D232), and DS07291 (D240)),
              complete sequence
          Length = 268369

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 37     tttagttatgcattacaagaa 57
              |||||||||||||||||||||
Sbjct: 159053 tttagttatgcattacaagaa 159033



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>gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0069E11, complete sequence
          Length = 136959

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   caacagagagttgatcgagc 286
             ||||||||||||||||||||
Sbjct: 82039 caacagagagttgatcgagc 82020



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>gb|AC116500.13| Mus musculus chromosome 5, clone RP24-297N9, complete sequence
          Length = 177689

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   actgaagttacaacacagtt 143
             ||||||||||||||||||||
Sbjct: 36167 actgaagttacaacacagtt 36186



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>gb|AY658640.1| Synthetic construct Peudomonas aeruginosa clone FLH034168.01F
           PA0343 gene, partial cds
          Length = 798

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 234 gaacctcgccattggcgagc 253
           ||||||||||||||||||||
Sbjct: 222 gaacctcgccattggcgagc 241



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>gb|AE006695.1| Sulfolobus solfataricus P2 section 54 of 272 of the complete genome
          Length = 13527

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   aggtcaacaacagagagttg 279
             ||||||||||||||||||||
Sbjct: 12823 aggtcaacaacagagagttg 12804



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>emb|AL096861.9|HSDJ824H1 Human DNA sequence from clone RP5-824H1 on chromosome Xq27.1-28,
             complete sequence
          Length = 129686

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 36    gtttagttatgcattacaagaaaa 59
             ||||||||| ||||||||||||||
Sbjct: 78085 gtttagttaggcattacaagaaaa 78062



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>emb|Y18930.1|SSU18930 Sulfolobus solfataricus 281 kb genomic DNA fragment, strain P2
          Length = 281244

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    aggtcaacaacagagagttg 279
              ||||||||||||||||||||
Sbjct: 131778 aggtcaacaacagagagttg 131797



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>emb|AL731643.4|OSJN00284 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085C10,
             complete sequence
          Length = 202924

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   caacagagagttgatcgagc 286
             ||||||||||||||||||||
Sbjct: 20624 caacagagagttgatcgagc 20605



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>emb|AL731668.6| Mouse DNA sequence from clone RP23-430C13 on chromosome 11 no genes,
            complete sequence
          Length = 55004

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  tatattagtagtagataagt 164
            ||||||||||||||||||||
Sbjct: 9105 tatattagtagtagataagt 9124



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>gb|AY521771.1| Australembia nodosa voucher BYU_ACEB008 28S ribosomal RNA gene,
           partial sequence
          Length = 1843

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 483 agtcctccgccgccactatg 502
           ||||||||||||||||||||
Sbjct: 174 agtcctccgccgccactatg 155



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>gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, complete sequence
          Length = 198967

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   ggctcaagaccaagctggtc 438
             ||||||||||||||||||||
Sbjct: 86721 ggctcaagaccaagctggtc 86702



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>gb|AC006435.7|AC006435 Homo sapiens chromosome 17, clone RP5-59D14, complete sequence
          Length = 139267

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 439    tgctgcaacctcaaacatct 458
              ||||||||||||||||||||
Sbjct: 113321 tgctgcaacctcaaacatct 113302



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 267     caacagagagttgatcgagc 286
               ||||||||||||||||||||
Sbjct: 8403113 caacagagagttgatcgagc 8403094



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 431      agctggtctgctgcaacctc 450
                ||||||||||||||||||||
Sbjct: 22121323 agctggtctgctgcaacctc 22121342



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>gb|AE004472.1| Pseudomonas aeruginosa PAO1, section 33 of 529 of the complete genome
          Length = 10474

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  gaacctcgccattggcgagc 253
            ||||||||||||||||||||
Sbjct: 3308 gaacctcgccattggcgagc 3289



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>dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0620D11
          Length = 140245

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   agctggtctgctgcaacctc 450
             ||||||||||||||||||||
Sbjct: 38622 agctggtctgctgcaacctc 38641



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>dbj|AP005461.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0612G07
          Length = 182548

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 431    agctggtctgctgcaacctc 450
              ||||||||||||||||||||
Sbjct: 159196 agctggtctgctgcaacctc 159215



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>dbj|AK112587.1| Ciona intestinalis cDNA, clone:cieg004b10, full insert sequence
          Length = 2585

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   caagaaaacaagaagtgaac 71
            ||||||||||||||||||||
Sbjct: 2489 caagaaaacaagaagtgaac 2470



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 267     caacagagagttgatcgagc 286
               ||||||||||||||||||||
Sbjct: 8473876 caacagagagttgatcgagc 8473857



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>emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0021F22,
              complete sequence
          Length = 181498

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    caacagagagttgatcgagc 286
              ||||||||||||||||||||
Sbjct: 157824 caacagagagttgatcgagc 157805



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>gb|AC162442.19| Mus musculus chromosome 1, clone RP24-178O17, complete sequence
          Length = 201383

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 544   ttccaggctcattctggggc 563
             ||||||||||||||||||||
Sbjct: 17415 ttccaggctcattctggggc 17396



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>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete
              sequence
          Length = 221374

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    gccacacacctcatcccagc 363
              ||||||||||||||||||||
Sbjct: 181672 gccacacacctcatcccagc 181653


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,293,016
Number of Sequences: 3902068
Number of extensions: 5293016
Number of successful extensions: 106582
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106297
Number of HSP's gapped (non-prelim): 270
length of query: 667
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 644
effective length of database: 17,143,297,704
effective search space: 11040283721376
effective search space used: 11040283721376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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