| Clone Name | rbags32k16 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17, complete sequence Length = 167269 Score = 377 bits (190), Expect = e-101 Identities = 408/481 (84%), Gaps = 6/481 (1%) Strand = Plus / Minus Query: 171 agaaacatcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccc 224 ||||| |||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 6231 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 6172 Query: 225 tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 284 || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| | Sbjct: 6171 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 6112 Query: 285 gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 344 ||||||| ||||||||||||||||| || || ||||||||||||| ||||||||||||| Sbjct: 6111 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 6052 Query: 345 ccacacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatca 404 | ||||||||||||||||||||||| ||||| | | ||| | |||||| |||||| || Sbjct: 6051 caacacacctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagca 5992 Query: 405 caagacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccct 464 ||||||| |||||||||||||||||||| || |||||| |||||||||||||| |||| Sbjct: 5991 caagacaaacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccct 5932 Query: 465 cgggtttccctcggtggaagtcctccgccgccactatgacatcgaaatagccttgcagac 524 |||||||||||||| ||| ||||| || |||||||| |||| || |||||||| |||| Sbjct: 5931 cgggtttccctcggcagaaatcctctgctgccactatagcatcaaagtagccttgaagac 5872 Query: 525 caacggcttttatgctttcttccaggctcattctggggcgagaagccgttactgctattg 584 |||| |||||||| | |||||| ||||||| | ||||||| || || | |||||||| Sbjct: 5871 caacagcttttatcccttcttctaggctcaaccgtgggcgaggagttgtgattgctattg 5812 Query: 585 gaatgtcagaatccacaagggtgttcaagaagtcgagaacacctggccgcagctgataga 644 |||||||| |||||||||||||||||| ||| || ||||||||||| ||||| || |||| Sbjct: 5811 gaatgtcaaaatccacaagggtgttcaggaaatcaagaacacctggtcgcagttggtaga 5752 Query: 645 a 645 | Sbjct: 5751 a 5751
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence Length = 127506 Score = 377 bits (190), Expect = e-101 Identities = 408/481 (84%), Gaps = 6/481 (1%) Strand = Plus / Minus Query: 171 agaaacatcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccc 224 ||||| |||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 112050 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 111991 Query: 225 tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 284 || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| | Sbjct: 111990 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 111931 Query: 285 gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 344 ||||||| ||||||||||||||||| || || ||||||||||||| ||||||||||||| Sbjct: 111930 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 111871 Query: 345 ccacacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatca 404 | ||||||||||||||||||||||| ||||| | | ||| | |||||| |||||| || Sbjct: 111870 caacacacctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagca 111811 Query: 405 caagacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccct 464 ||||||| |||||||||||||||||||| || |||||| |||||||||||||| |||| Sbjct: 111810 caagacaaacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccct 111751 Query: 465 cgggtttccctcggtggaagtcctccgccgccactatgacatcgaaatagccttgcagac 524 |||||||||||||| ||| ||||| || |||||||| |||| || |||||||| |||| Sbjct: 111750 cgggtttccctcggcagaaatcctctgctgccactatagcatcaaagtagccttgaagac 111691 Query: 525 caacggcttttatgctttcttccaggctcattctggggcgagaagccgttactgctattg 584 |||| |||||||| | |||||| ||||||| | ||||||| || || | |||||||| Sbjct: 111690 caacagcttttatcccttcttctaggctcaaccgtgggcgaggagttgtgattgctattg 111631 Query: 585 gaatgtcagaatccacaagggtgttcaagaagtcgagaacacctggccgcagctgataga 644 |||||||| |||||||||||||||||| ||| || ||||||||||| ||||| || |||| Sbjct: 111630 gaatgtcaaaatccacaagggtgttcaggaaatcaagaacacctggtcgcagttggtaga 111571 Query: 645 a 645 | Sbjct: 111570 a 111570
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 377 bits (190), Expect = e-101 Identities = 408/481 (84%), Gaps = 6/481 (1%) Strand = Plus / Minus Query: 171 agaaacatcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccc 224 ||||| |||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 27843378 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 27843319 Query: 225 tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 284 || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| | Sbjct: 27843318 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 27843259 Query: 285 gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 344 ||||||| ||||||||||||||||| || || ||||||||||||| ||||||||||||| Sbjct: 27843258 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 27843199 Query: 345 ccacacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatca 404 | ||||||||||||||||||||||| ||||| | | ||| | |||||| |||||| || Sbjct: 27843198 caacacacctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagca 27843139 Query: 405 caagacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccct 464 ||||||| |||||||||||||||||||| || |||||| |||||||||||||| |||| Sbjct: 27843138 caagacaaacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccct 27843079 Query: 465 cgggtttccctcggtggaagtcctccgccgccactatgacatcgaaatagccttgcagac 524 |||||||||||||| ||| ||||| || |||||||| |||| || |||||||| |||| Sbjct: 27843078 cgggtttccctcggcagaaatcctctgctgccactatagcatcaaagtagccttgaagac 27843019 Query: 525 caacggcttttatgctttcttccaggctcattctggggcgagaagccgttactgctattg 584 |||| |||||||| | |||||| ||||||| | ||||||| || || | |||||||| Sbjct: 27843018 caacagcttttatcccttcttctaggctcaaccgtgggcgaggagttgtgattgctattg 27842959 Query: 585 gaatgtcagaatccacaagggtgttcaagaagtcgagaacacctggccgcagctgataga 644 |||||||| |||||||||||||||||| ||| || ||||||||||| ||||| || |||| Sbjct: 27842958 gaatgtcaaaatccacaagggtgttcaggaaatcaagaacacctggtcgcagttggtaga 27842899 Query: 645 a 645 | Sbjct: 27842898 a 27842898 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 caacagagagttgatcgagc 286 |||||||||||||||||||| Sbjct: 7635351 caacagagagttgatcgagc 7635332
>dbj|AK067832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121O07, full insert sequence Length = 1499 Score = 377 bits (190), Expect = e-101 Identities = 408/481 (84%), Gaps = 6/481 (1%) Strand = Plus / Minus Query: 171 agaaacatcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccc 224 ||||| |||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 1228 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 1169 Query: 225 tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 284 || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| | Sbjct: 1168 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 1109 Query: 285 gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 344 ||||||| ||||||||||||||||| || || ||||||||||||| ||||||||||||| Sbjct: 1108 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 1049 Query: 345 ccacacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatca 404 | ||||||||||||||||||||||| ||||| | | ||| | |||||| |||||| || Sbjct: 1048 caacacacctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagca 989 Query: 405 caagacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccct 464 ||||||| |||||||||||||||||||| || |||||| |||||||||||||| |||| Sbjct: 988 caagacaaacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccct 929 Query: 465 cgggtttccctcggtggaagtcctccgccgccactatgacatcgaaatagccttgcagac 524 |||||||||||||| ||| ||||| || |||||||| |||| || |||||||| |||| Sbjct: 928 cgggtttccctcggcagaaatcctctgctgccactatagcatcaaagtagccttgaagac 869 Query: 525 caacggcttttatgctttcttccaggctcattctggggcgagaagccgttactgctattg 584 |||| |||||||| | |||||| ||||||| | ||||||| || || | |||||||| Sbjct: 868 caacagcttttatcccttcttctaggctcaaccgtgggcgaggagttgtgattgctattg 809 Query: 585 gaatgtcagaatccacaagggtgttcaagaagtcgagaacacctggccgcagctgataga 644 |||||||| |||||||||||||||||| ||| || ||||||||||| ||||| || |||| Sbjct: 808 gaatgtcaaaatccacaagggtgttcaggaaatcaagaacacctggtcgcagttggtaga 749 Query: 645 a 645 | Sbjct: 748 a 748
>ref|XM_473465.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1053 Score = 371 bits (187), Expect = 2e-99 Identities = 402/474 (84%), Gaps = 6/474 (1%) Strand = Plus / Minus Query: 178 tcactcctcgatcacaatctccatgtccatgtc------agattgtctgcccctgcgccc 231 ||||||||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct: 1053 tcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccctgagccc 994 Query: 232 aagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagccatct 291 ||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| |||||||| Sbjct: 993 aagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaagccatct 934 Query: 292 cacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgccacaca 351 ||||||||||||||||| || || ||||||||||||| |||||||||||||| ||||| Sbjct: 933 tacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccgcaacaca 874 Query: 352 cctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatcacaagaca 411 |||||||||||||||||| ||||| | | ||| | |||||| |||||| ||||||||| Sbjct: 873 cctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagcacaagaca 814 Query: 412 gacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccctcgggttt 471 |||||||||||||||||||| || |||||| |||||||||||||| ||||||||||| Sbjct: 813 aacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccctcgggttt 754 Query: 472 ccctcggtggaagtcctccgccgccactatgacatcgaaatagccttgcagaccaacggc 531 ||||||| ||| ||||| || |||||||| |||| || |||||||| |||||||| || Sbjct: 753 ccctcggcagaaatcctctgctgccactatagcatcaaagtagccttgaagaccaacagc 694 Query: 532 ttttatgctttcttccaggctcattctggggcgagaagccgttactgctattggaatgtc 591 |||||| | |||||| ||||||| | ||||||| || || | ||||||||||||||| Sbjct: 693 ttttatcccttcttctaggctcaaccgtgggcgaggagttgtgattgctattggaatgtc 634 Query: 592 agaatccacaagggtgttcaagaagtcgagaacacctggccgcagctgatagaa 645 | |||||||||||||||||| ||| || ||||||||||| ||||| || ||||| Sbjct: 633 aaaatccacaagggtgttcaggaaatcaagaacacctggtcgcagttggtagaa 580
>gb|AF296824.1|AF296824 Zea mays genetic modifier (isr) mRNA, complete cds Length = 1480 Score = 317 bits (160), Expect = 3e-83 Identities = 370/440 (84%) Strand = Plus / Minus Query: 176 catcactcctcgatcacaatctccatgtccatgtcagattgtctgcccctgcgcccaaga 235 ||||| ||||| |||||||| ||||| ||||||||||||| ||| |||||||| |||| | Sbjct: 1218 catcattcctcaatcacaatttccatatccatgtcagattctctacccctgcgaccaata 1159 Query: 236 acctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagccatctcaca 295 || || ||||| || |||||||||| |||||||| |||||| ||||| |||||||||||| Sbjct: 1158 acttcaccattagcaagcctctgcaagtcaacaatagagagctgatcaagccatctcaca 1099 Query: 296 acatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgccacacacctc 355 ||||||||||||| || || |||||||||||||| |||| |||||| |||||||||||| Sbjct: 1098 acatggtttgctgattggagctcataggcagggtgtcggcctgcaactgccacacacctc 1039 Query: 356 atcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatcacaagacagaca 415 |||||||| |||||||||| | |||||||||||||||| |||| | ||||| |||| || Sbjct: 1038 atcccagcgttatgtgcagattccgtcgtcaagtttgagttaccaaacacaacacaggca 979 Query: 416 tcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccctcgggtttccct 475 || || || |||||||| || || ||||| || |||||||||||||| || ||||||||| Sbjct: 978 tctggttccagaccaagttgctccgctgcgacttcaaacatctcaccatcaggtttccct 919 Query: 476 cggtggaagtcctccgccgccactatgacatcgaaatagccttgcagaccaacggctttt 535 | |||||||||| || ||||| ||||||| ||||||||||||||||| | ||| Sbjct: 918 aagcagaagtcctccaatgcaactatagcatcgaagtagccttgcagaccaacagttttg 859 Query: 536 atgctttcttccaggctcattctggggcgagaagccgttactgctattggaatgtcagaa 595 || | |||||| |||||| | || | ||||| ||| | | |||||||||||||||| || Sbjct: 858 atcccttcttcaaggctcttccttgagcgaggagctgcaattgctattggaatgtcaaaa 799 Query: 596 tccacaagggtgttcaagaa 615 ||||||||||||||||||| Sbjct: 798 cccacaagggtgttcaagaa 779
>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol precursor -orf2, putative Fourf gag/pol protein, putative NADP-dependent malic enzyme, putative argonaute protein, putative pinhead protein, putative pol protein, putative gag protein, putative TNP2, r1-B73 proteins, putative genetic modifier, putative S-receptor kinase, putative aldose reductase-related protein, putative glutathione peroxidase, putative glycerol 3-phosphate permease, putative response regulator, and putative 4-coumarate-CoA ligase-like protein genes, complete cds Length = 290350 Score = 317 bits (160), Expect = 3e-83 Identities = 370/440 (84%) Strand = Plus / Plus Query: 176 catcactcctcgatcacaatctccatgtccatgtcagattgtctgcccctgcgcccaaga 235 ||||| ||||| |||||||| ||||| ||||||||||||| ||| |||||||| |||| | Sbjct: 91369 catcattcctcaatcacaatttccatatccatgtcagattctctacccctgcgaccaata 91428 Query: 236 acctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagccatctcaca 295 || || ||||| || |||||||||| |||||||| |||||| ||||| |||||||||||| Sbjct: 91429 acttcaccattagcaagcctctgcaagtcaacaatagagagctgatcaagccatctcaca 91488 Query: 296 acatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgccacacacctc 355 ||||||||||||| || || |||||||||||||| |||| |||||| |||||||||||| Sbjct: 91489 acatggtttgctgattggagctcataggcagggtgtcggcctgcaactgccacacacctc 91548 Query: 356 atcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatcacaagacagaca 415 |||||||| |||||||||| | |||||||||||||||| |||| | ||||| |||| || Sbjct: 91549 atcccagcgttatgtgcagattccgtcgtcaagtttgagttaccaaacacaacacaggca 91608 Query: 416 tcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccctcgggtttccct 475 || || || |||||||| || || ||||| || |||||||||||||| || ||||||||| Sbjct: 91609 tctggttccagaccaagttgctccgctgcgacttcaaacatctcaccatcaggtttccct 91668 Query: 476 cggtggaagtcctccgccgccactatgacatcgaaatagccttgcagaccaacggctttt 535 | |||||||||| || ||||| ||||||| ||||||||||||||||| | ||| Sbjct: 91669 aagcagaagtcctccaatgcaactatagcatcgaagtagccttgcagaccaacagttttg 91728 Query: 536 atgctttcttccaggctcattctggggcgagaagccgttactgctattggaatgtcagaa 595 || | |||||| |||||| | || | ||||| ||| | | |||||||||||||||| || Sbjct: 91729 atcccttcttcaaggctcttccttgagcgaggagctgcaattgctattggaatgtcaaaa 91788 Query: 596 tccacaagggtgttcaagaa 615 ||||||||||||||||||| Sbjct: 91789 cccacaagggtgttcaagaa 91808
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds Length = 157237 Score = 260 bits (131), Expect = 5e-66 Identities = 276/323 (85%), Gaps = 1/323 (0%) Strand = Plus / Plus Query: 168 tgcagaaacatcactcctcgatcacaatctccatgtccatgtcagattgtctgcccctgc 227 ||||||| ||||| |||||||||||||| ||||| ||||||||||||| ||| ||||||| Sbjct: 48028 tgcagaagcatcattcctcgatcacaatttccatatccatgtcagattctctacccctgc 48087 Query: 228 gcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagcc 287 | |||| ||| || ||||| || |||||||||| |||||||| ||||| ||| || |||| Sbjct: 48088 gaccaataacttcaccattagcaagcctctgcaagtcaacaatagagaattggtcaagcc 48147 Query: 288 atctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgcca 347 |||||||||||||| ||||||| || || |||||||||||||| |||| |||||| |||| Sbjct: 48148 atctcacaacatggcttgctgcttggagctcataggcagggtgtcggcctgcaactgcca 48207 Query: 348 cacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatcacaa 407 |||||||||||| ||| |||||||||| | |||||||||||||||| |||| | ||||| Sbjct: 48208 cacacctcatcctagcgttatgtgcagattccgtcgtcaagtttgagttaccaaacacaa 48267 Query: 408 gacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccctcgg 467 ||| ||||| ||||| |||| ||| || ||||| | ||||||||||||||||| || | Sbjct: 48268 -acaaacatctggctccagactaagttgctctgccacgacctcaaacatctcaccatcag 48326 Query: 468 gtttccctcggtggaagtcctcc 490 |||||||| || |||||||||| Sbjct: 48327 gtttccctaggcagaagtcctcc 48349 Score = 54.0 bits (27), Expect = 6e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 577 tgctattggaatgtcagaatccacaagggtgttcaagaagtcgagaacacctggccgcag 636 ||||||||||||||| || ||||||| ||||||||||| || || |||||| | ||||| Sbjct: 48436 tgctattggaatgtccaaacccacaagcgtgttcaagaaatcaagcacacctagtcgcag 48495 Query: 637 ctg 639 ||| Sbjct: 48496 ctg 48498
>gb|AC004694.1| Homo sapiens BAC clone CTB-152H24 from 7, complete sequence Length = 63749 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 cacaaaatgtaatgcagtact 126 ||||||||||||||||||||| Sbjct: 56083 cacaaaatgtaatgcagtact 56103
>gb|AC010007.4| Drosophila melanogaster 3L BAC RP98-17K17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175481 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 tttagttatgcattacaagaa 57 ||||||||||||||||||||| Sbjct: 66613 tttagttatgcattacaagaa 66633
>gb|AC091128.2| Drosophila melanogaster 3L BAC RP98-17O7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170465 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 tttagttatgcattacaagaa 57 ||||||||||||||||||||| Sbjct: 167140 tttagttatgcattacaagaa 167160
>gb|AE003471.3| Drosophila melanogaster chromosome 3L, section 5 of 83 of the complete sequence Length = 302131 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 tttagttatgcattacaagaa 57 ||||||||||||||||||||| Sbjct: 53355 tttagttatgcattacaagaa 53375
>gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s DS03179 (D226), DS06357 (D230), DS03404 (D231), DS06962 (D232), and DS07291 (D240)), complete sequence Length = 268369 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 tttagttatgcattacaagaa 57 ||||||||||||||||||||| Sbjct: 159053 tttagttatgcattacaagaa 159033
>gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0069E11, complete sequence Length = 136959 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 caacagagagttgatcgagc 286 |||||||||||||||||||| Sbjct: 82039 caacagagagttgatcgagc 82020
>gb|AC116500.13| Mus musculus chromosome 5, clone RP24-297N9, complete sequence Length = 177689 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 actgaagttacaacacagtt 143 |||||||||||||||||||| Sbjct: 36167 actgaagttacaacacagtt 36186
>gb|AY658640.1| Synthetic construct Peudomonas aeruginosa clone FLH034168.01F PA0343 gene, partial cds Length = 798 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 gaacctcgccattggcgagc 253 |||||||||||||||||||| Sbjct: 222 gaacctcgccattggcgagc 241
>gb|AE006695.1| Sulfolobus solfataricus P2 section 54 of 272 of the complete genome Length = 13527 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 aggtcaacaacagagagttg 279 |||||||||||||||||||| Sbjct: 12823 aggtcaacaacagagagttg 12804
>emb|AL096861.9|HSDJ824H1 Human DNA sequence from clone RP5-824H1 on chromosome Xq27.1-28, complete sequence Length = 129686 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 gtttagttatgcattacaagaaaa 59 ||||||||| |||||||||||||| Sbjct: 78085 gtttagttaggcattacaagaaaa 78062
>emb|Y18930.1|SSU18930 Sulfolobus solfataricus 281 kb genomic DNA fragment, strain P2 Length = 281244 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 aggtcaacaacagagagttg 279 |||||||||||||||||||| Sbjct: 131778 aggtcaacaacagagagttg 131797
>emb|AL731643.4|OSJN00284 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085C10, complete sequence Length = 202924 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 caacagagagttgatcgagc 286 |||||||||||||||||||| Sbjct: 20624 caacagagagttgatcgagc 20605
>emb|AL731668.6| Mouse DNA sequence from clone RP23-430C13 on chromosome 11 no genes, complete sequence Length = 55004 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tatattagtagtagataagt 164 |||||||||||||||||||| Sbjct: 9105 tatattagtagtagataagt 9124
>gb|AY521771.1| Australembia nodosa voucher BYU_ACEB008 28S ribosomal RNA gene, partial sequence Length = 1843 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 agtcctccgccgccactatg 502 |||||||||||||||||||| Sbjct: 174 agtcctccgccgccactatg 155
>gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, complete sequence Length = 198967 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 ggctcaagaccaagctggtc 438 |||||||||||||||||||| Sbjct: 86721 ggctcaagaccaagctggtc 86702
>gb|AC006435.7|AC006435 Homo sapiens chromosome 17, clone RP5-59D14, complete sequence Length = 139267 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 tgctgcaacctcaaacatct 458 |||||||||||||||||||| Sbjct: 113321 tgctgcaacctcaaacatct 113302
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 caacagagagttgatcgagc 286 |||||||||||||||||||| Sbjct: 8403113 caacagagagttgatcgagc 8403094
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 agctggtctgctgcaacctc 450 |||||||||||||||||||| Sbjct: 22121323 agctggtctgctgcaacctc 22121342
>gb|AE004472.1| Pseudomonas aeruginosa PAO1, section 33 of 529 of the complete genome Length = 10474 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 gaacctcgccattggcgagc 253 |||||||||||||||||||| Sbjct: 3308 gaacctcgccattggcgagc 3289
>dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0620D11 Length = 140245 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 agctggtctgctgcaacctc 450 |||||||||||||||||||| Sbjct: 38622 agctggtctgctgcaacctc 38641
>dbj|AP005461.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0612G07 Length = 182548 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 agctggtctgctgcaacctc 450 |||||||||||||||||||| Sbjct: 159196 agctggtctgctgcaacctc 159215
>dbj|AK112587.1| Ciona intestinalis cDNA, clone:cieg004b10, full insert sequence Length = 2585 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 caagaaaacaagaagtgaac 71 |||||||||||||||||||| Sbjct: 2489 caagaaaacaagaagtgaac 2470
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 caacagagagttgatcgagc 286 |||||||||||||||||||| Sbjct: 8473876 caacagagagttgatcgagc 8473857
>emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0021F22, complete sequence Length = 181498 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 caacagagagttgatcgagc 286 |||||||||||||||||||| Sbjct: 157824 caacagagagttgatcgagc 157805
>gb|AC162442.19| Mus musculus chromosome 1, clone RP24-178O17, complete sequence Length = 201383 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 ttccaggctcattctggggc 563 |||||||||||||||||||| Sbjct: 17415 ttccaggctcattctggggc 17396
>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete sequence Length = 221374 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 gccacacacctcatcccagc 363 |||||||||||||||||||| Sbjct: 181672 gccacacacctcatcccagc 181653 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,293,016 Number of Sequences: 3902068 Number of extensions: 5293016 Number of successful extensions: 106582 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106297 Number of HSP's gapped (non-prelim): 270 length of query: 667 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 644 effective length of database: 17,143,297,704 effective search space: 11040283721376 effective search space used: 11040283721376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)