>VE1_HPV13 (Q02261) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 646

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = -2

Query: 115 DHKVLYLYX---VLDPPNPMPFFQNGETVIE 32
           D K  YLY     L  PNP PF +NG  V E
Sbjct: 571 DDKYKYLYSRVTTLTFPNPFPFDRNGNAVYE 601


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,393,257
Number of Sequences: 219361
Number of extensions: 246068
Number of successful extensions: 488
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 80,573,946
effective HSP length: 25
effective length of database: 75,089,921
effective search space used: 1802158104
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)