ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32k13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X95549.1|XLFIMB1GN X.laevis FIM-B.1 gene 42 0.46
2emb|AL954325.8| Mouse DNA sequence from clone RP23-416H10 on chr... 42 0.46
3emb|AL592158.14| Human DNA sequence from clone XXyac-38GF2 on ch... 40 1.8
4gb|AC091293.2| Takifugu rubripes clone 283N9, complete sequence 40 1.8
5gb|AC159227.3| Mus musculus BAC clone RP24-334D12 from chromosom... 38 7.2
6gb|BC084672.1| Xenopus laevis MGC82842 protein, mRNA (cDNA clone... 38 7.2
7gb|AC007890.6| Drosophila melanogaster clone BACR02G21, complete... 38 7.2
8gb|AC009394.5| Drosophila melanogaster clone BACR03J17, complete... 38 7.2
9gb|BC073559.1| Xenopus laevis MGC82842 protein, mRNA (cDNA clone... 38 7.2
10ref|XM_609695.2| PREDICTED: Bos taurus similar to Nascent polype... 38 7.2
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.2
12gb|AC125162.4| Mus musculus BAC clone RP24-421D9 from chromosome... 38 7.2
13gb|AC078791.8| Homo sapiens BAC clone RP11-211J15 from 7, comple... 38 7.2
14gb|AC160390.2| Mus musculus BAC clone RP24-465C5 from chromosome... 38 7.2
15gb|AC146154.3| Pan troglodytes BAC clone RP43-37E8 from 7, compl... 38 7.2
16emb|AL590379.7| Human DNA sequence from clone RP11-343H6 on chro... 38 7.2
17emb|AL356244.12| Human DNA sequence from clone RP11-174M15 on ch... 38 7.2
18emb|AL158832.13| Human DNA sequence from clone RP11-59O6 on chro... 38 7.2
19gb|AC097262.10| Homo sapiens X BAC RP11-268G12 (Roswell Park Can... 38 7.2
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
21gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome... 38 7.2
22gb|AC016681.2|AC016681 Homo sapiens BAC clone RP11-62H15 from Y,... 38 7.2
23gb|AE003721.3| Drosophila melanogaster chromosome 3R, section 59... 38 7.2
24emb|CT573091.1| Pan troglodytes chromosome X BAC RP43-060K07, co... 38 7.2
25gb|AC132138.2| Mus musculus BAC clone RP23-178E7 from 8, complet... 38 7.2
26emb|AL590492.7| Human DNA sequence from clone RP11-88H5 on chrom... 38 7.2

>emb|X95549.1|XLFIMB1GN X.laevis FIM-B.1 gene
          Length = 7026

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 25   ttacattctcaatcactgttt 45
            |||||||||||||||||||||
Sbjct: 3795 ttacattctcaatcactgttt 3815



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>emb|AL954325.8| Mouse DNA sequence from clone RP23-416H10 on chromosome 2, complete
             sequence
          Length = 195457

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    ttacattctcaatcactgttt 45
             |||||||||||||||||||||
Sbjct: 58836 ttacattctcaatcactgttt 58856



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>emb|AL592158.14| Human DNA sequence from clone XXyac-38GF2 on chromosome 6, complete
             sequence
          Length = 38304

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   tgcaggatgctagcatactt 142
             ||||||||||||||||||||
Sbjct: 28073 tgcaggatgctagcatactt 28092



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>gb|AC091293.2| Takifugu rubripes clone 283N9, complete sequence
          Length = 147908

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 33     tcaatcactgtttcaccattctga 56
              ||||||||||||||||| ||||||
Sbjct: 147751 tcaatcactgtttcacctttctga 147774



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>gb|AC159227.3| Mus musculus BAC clone RP24-334D12 from chromosome 12, complete sequence
          Length = 211971

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 120    acctgcaggatgctagcat 138
              |||||||||||||||||||
Sbjct: 102056 acctgcaggatgctagcat 102074



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>gb|BC084672.1| Xenopus laevis MGC82842 protein, mRNA (cDNA clone MGC:98234
           IMAGE:4884385), complete cds
          Length = 2879

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 7   caagaaattgcagaggtct 25
           |||||||||||||||||||
Sbjct: 735 caagaaattgcagaggtct 753



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>gb|AC007890.6| Drosophila melanogaster clone BACR02G21, complete sequence
          Length = 171563

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 92    atataaatacaaaactttg 110
             |||||||||||||||||||
Sbjct: 17514 atataaatacaaaactttg 17496



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>gb|AC009394.5| Drosophila melanogaster clone BACR03J17, complete sequence
          Length = 199043

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 92     atataaatacaaaactttg 110
              |||||||||||||||||||
Sbjct: 170347 atataaatacaaaactttg 170329



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>gb|BC073559.1| Xenopus laevis MGC82842 protein, mRNA (cDNA clone MGC:82842
           IMAGE:5506877), complete cds
          Length = 2884

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 7   caagaaattgcagaggtct 25
           |||||||||||||||||||
Sbjct: 752 caagaaattgcagaggtct 770



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>ref|XM_609695.2| PREDICTED: Bos taurus similar to Nascent polypeptide-associated
            complex alpha subunit, muscle-specific form (Alpha-NAC,
            muscle-specific form) (LOC531208), mRNA
          Length = 8513

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 115  cttacacctgcaggatgct 133
            |||||||||||||||||||
Sbjct: 3468 cttacacctgcaggatgct 3486



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 50      attctgaaaaaatggcatg 68
               |||||||||||||||||||
Sbjct: 4487980 attctgaaaaaatggcatg 4487998



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>gb|AC125162.4| Mus musculus BAC clone RP24-421D9 from chromosome 8, complete sequence
          Length = 206643

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 55     gaaaaaatggcatgggatt 73
              |||||||||||||||||||
Sbjct: 150443 gaaaaaatggcatgggatt 150461



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>gb|AC078791.8| Homo sapiens BAC clone RP11-211J15 from 7, complete sequence
          Length = 83898

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    tgtttcaccattctgaaaa 59
             |||||||||||||||||||
Sbjct: 74667 tgtttcaccattctgaaaa 74685



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>gb|AC160390.2| Mus musculus BAC clone RP24-465C5 from chromosome 12, complete sequence
          Length = 152049

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 120   acctgcaggatgctagcat 138
             |||||||||||||||||||
Sbjct: 31422 acctgcaggatgctagcat 31440



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>gb|AC146154.3| Pan troglodytes BAC clone RP43-37E8 from 7, complete sequence
          Length = 240699

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    tgtttcaccattctgaaaa 59
             |||||||||||||||||||
Sbjct: 75534 tgtttcaccattctgaaaa 75552



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>emb|AL590379.7| Human DNA sequence from clone RP11-343H6 on chromosome X, complete
             sequence
          Length = 100545

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 39    actgtttcaccattctgaaaaaa 61
             ||||||||||||| |||||||||
Sbjct: 59302 actgtttcaccatcctgaaaaaa 59280



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>emb|AL356244.12| Human DNA sequence from clone RP11-174M15 on chromosome 9 Contains the 5'
              end of the gene for COBW-like protein (LOC55871), 2 novel
              genes, the 5' end of a novel gene (contains FLJ36253 and
              FLJ00026) and a CpG island, complete sequence
          Length = 175153

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     ttctgaaaaaatggcatgg 69
              |||||||||||||||||||
Sbjct: 145311 ttctgaaaaaatggcatgg 145293



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>emb|AL158832.13| Human DNA sequence from clone RP11-59O6 on chromosome 9 Contains two
             novel genes, the 5' end of a novel gene (contains FLJ36253
             and FLJ00026) and a CpG island, complete sequence
          Length = 167531

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    ttctgaaaaaatggcatgg 69
             |||||||||||||||||||
Sbjct: 74529 ttctgaaaaaatggcatgg 74511



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>gb|AC097262.10| Homo sapiens X BAC RP11-268G12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184942

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     actgtttcaccattctgaa 57
              |||||||||||||||||||
Sbjct: 103208 actgtttcaccattctgaa 103226



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 50      attctgaaaaaatggcatg 68
               |||||||||||||||||||
Sbjct: 4488095 attctgaaaaaatggcatg 4488113



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>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0042J17, complete sequence
          Length = 171442

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 50    attctgaaaaaatggcatg 68
             |||||||||||||||||||
Sbjct: 93272 attctgaaaaaatggcatg 93290



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>gb|AC016681.2|AC016681 Homo sapiens BAC clone RP11-62H15 from Y, complete sequence
          Length = 68726

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 39    actgtttcaccattctgaaaaaa 61
             ||||||||||||| |||||||||
Sbjct: 48372 actgtttcaccatcctgaaaaaa 48350



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>gb|AE003721.3| Drosophila melanogaster chromosome 3R, section 59 of 118 of the complete
              sequence
          Length = 224889

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 92     atataaatacaaaactttg 110
              |||||||||||||||||||
Sbjct: 190841 atataaatacaaaactttg 190823



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>emb|CT573091.1| Pan troglodytes chromosome X BAC RP43-060K07, complete sequence
          Length = 121895

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    actgtttcaccattctgaa 57
             |||||||||||||||||||
Sbjct: 55333 actgtttcaccattctgaa 55351



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>gb|AC132138.2| Mus musculus BAC clone RP23-178E7 from 8, complete sequence
          Length = 204856

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 55    gaaaaaatggcatgggatt 73
             |||||||||||||||||||
Sbjct: 16584 gaaaaaatggcatgggatt 16602



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>emb|AL590492.7| Human DNA sequence from clone RP11-88H5 on chromosome X, complete
             sequence
          Length = 129357

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 39    actgtttcaccattctgaaaaaa 61
             ||||||||||||| |||||||||
Sbjct: 89585 actgtttcaccatcctgaaaaaa 89563


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,396,264
Number of Sequences: 3902068
Number of extensions: 1396264
Number of successful extensions: 101811
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101728
Number of HSP's gapped (non-prelim): 83
length of query: 149
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 128
effective length of database: 17,151,101,840
effective search space: 2195341035520
effective search space used: 2195341035520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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