| Clone Name | rbags32k13 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X95549.1|XLFIMB1GN X.laevis FIM-B.1 gene Length = 7026 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 ttacattctcaatcactgttt 45 ||||||||||||||||||||| Sbjct: 3795 ttacattctcaatcactgttt 3815
>emb|AL954325.8| Mouse DNA sequence from clone RP23-416H10 on chromosome 2, complete sequence Length = 195457 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 ttacattctcaatcactgttt 45 ||||||||||||||||||||| Sbjct: 58836 ttacattctcaatcactgttt 58856
>emb|AL592158.14| Human DNA sequence from clone XXyac-38GF2 on chromosome 6, complete sequence Length = 38304 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 tgcaggatgctagcatactt 142 |||||||||||||||||||| Sbjct: 28073 tgcaggatgctagcatactt 28092
>gb|AC091293.2| Takifugu rubripes clone 283N9, complete sequence Length = 147908 Score = 40.1 bits (20), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 tcaatcactgtttcaccattctga 56 ||||||||||||||||| |||||| Sbjct: 147751 tcaatcactgtttcacctttctga 147774
>gb|AC159227.3| Mus musculus BAC clone RP24-334D12 from chromosome 12, complete sequence Length = 211971 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 acctgcaggatgctagcat 138 ||||||||||||||||||| Sbjct: 102056 acctgcaggatgctagcat 102074
>gb|BC084672.1| Xenopus laevis MGC82842 protein, mRNA (cDNA clone MGC:98234 IMAGE:4884385), complete cds Length = 2879 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 caagaaattgcagaggtct 25 ||||||||||||||||||| Sbjct: 735 caagaaattgcagaggtct 753
>gb|AC007890.6| Drosophila melanogaster clone BACR02G21, complete sequence Length = 171563 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 atataaatacaaaactttg 110 ||||||||||||||||||| Sbjct: 17514 atataaatacaaaactttg 17496
>gb|AC009394.5| Drosophila melanogaster clone BACR03J17, complete sequence Length = 199043 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 atataaatacaaaactttg 110 ||||||||||||||||||| Sbjct: 170347 atataaatacaaaactttg 170329
>gb|BC073559.1| Xenopus laevis MGC82842 protein, mRNA (cDNA clone MGC:82842 IMAGE:5506877), complete cds Length = 2884 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 caagaaattgcagaggtct 25 ||||||||||||||||||| Sbjct: 752 caagaaattgcagaggtct 770
>ref|XM_609695.2| PREDICTED: Bos taurus similar to Nascent polypeptide-associated complex alpha subunit, muscle-specific form (Alpha-NAC, muscle-specific form) (LOC531208), mRNA Length = 8513 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 cttacacctgcaggatgct 133 ||||||||||||||||||| Sbjct: 3468 cttacacctgcaggatgct 3486
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 attctgaaaaaatggcatg 68 ||||||||||||||||||| Sbjct: 4487980 attctgaaaaaatggcatg 4487998
>gb|AC125162.4| Mus musculus BAC clone RP24-421D9 from chromosome 8, complete sequence Length = 206643 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 gaaaaaatggcatgggatt 73 ||||||||||||||||||| Sbjct: 150443 gaaaaaatggcatgggatt 150461
>gb|AC078791.8| Homo sapiens BAC clone RP11-211J15 from 7, complete sequence Length = 83898 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 tgtttcaccattctgaaaa 59 ||||||||||||||||||| Sbjct: 74667 tgtttcaccattctgaaaa 74685
>gb|AC160390.2| Mus musculus BAC clone RP24-465C5 from chromosome 12, complete sequence Length = 152049 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 acctgcaggatgctagcat 138 ||||||||||||||||||| Sbjct: 31422 acctgcaggatgctagcat 31440
>gb|AC146154.3| Pan troglodytes BAC clone RP43-37E8 from 7, complete sequence Length = 240699 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 tgtttcaccattctgaaaa 59 ||||||||||||||||||| Sbjct: 75534 tgtttcaccattctgaaaa 75552
>emb|AL590379.7| Human DNA sequence from clone RP11-343H6 on chromosome X, complete sequence Length = 100545 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 39 actgtttcaccattctgaaaaaa 61 ||||||||||||| ||||||||| Sbjct: 59302 actgtttcaccatcctgaaaaaa 59280
>emb|AL356244.12| Human DNA sequence from clone RP11-174M15 on chromosome 9 Contains the 5' end of the gene for COBW-like protein (LOC55871), 2 novel genes, the 5' end of a novel gene (contains FLJ36253 and FLJ00026) and a CpG island, complete sequence Length = 175153 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 ttctgaaaaaatggcatgg 69 ||||||||||||||||||| Sbjct: 145311 ttctgaaaaaatggcatgg 145293
>emb|AL158832.13| Human DNA sequence from clone RP11-59O6 on chromosome 9 Contains two novel genes, the 5' end of a novel gene (contains FLJ36253 and FLJ00026) and a CpG island, complete sequence Length = 167531 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 ttctgaaaaaatggcatgg 69 ||||||||||||||||||| Sbjct: 74529 ttctgaaaaaatggcatgg 74511
>gb|AC097262.10| Homo sapiens X BAC RP11-268G12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184942 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 actgtttcaccattctgaa 57 ||||||||||||||||||| Sbjct: 103208 actgtttcaccattctgaa 103226
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 attctgaaaaaatggcatg 68 ||||||||||||||||||| Sbjct: 4488095 attctgaaaaaatggcatg 4488113
>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0042J17, complete sequence Length = 171442 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 attctgaaaaaatggcatg 68 ||||||||||||||||||| Sbjct: 93272 attctgaaaaaatggcatg 93290
>gb|AC016681.2|AC016681 Homo sapiens BAC clone RP11-62H15 from Y, complete sequence Length = 68726 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 39 actgtttcaccattctgaaaaaa 61 ||||||||||||| ||||||||| Sbjct: 48372 actgtttcaccatcctgaaaaaa 48350
>gb|AE003721.3| Drosophila melanogaster chromosome 3R, section 59 of 118 of the complete sequence Length = 224889 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 atataaatacaaaactttg 110 ||||||||||||||||||| Sbjct: 190841 atataaatacaaaactttg 190823
>emb|CT573091.1| Pan troglodytes chromosome X BAC RP43-060K07, complete sequence Length = 121895 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 actgtttcaccattctgaa 57 ||||||||||||||||||| Sbjct: 55333 actgtttcaccattctgaa 55351
>gb|AC132138.2| Mus musculus BAC clone RP23-178E7 from 8, complete sequence Length = 204856 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 gaaaaaatggcatgggatt 73 ||||||||||||||||||| Sbjct: 16584 gaaaaaatggcatgggatt 16602
>emb|AL590492.7| Human DNA sequence from clone RP11-88H5 on chromosome X, complete sequence Length = 129357 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 39 actgtttcaccattctgaaaaaa 61 ||||||||||||| ||||||||| Sbjct: 89585 actgtttcaccatcctgaaaaaa 89563 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,396,264 Number of Sequences: 3902068 Number of extensions: 1396264 Number of successful extensions: 101811 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101728 Number of HSP's gapped (non-prelim): 83 length of query: 149 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 128 effective length of database: 17,151,101,840 effective search space: 2195341035520 effective search space used: 2195341035520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)