>RS25A_ARATH (Q9SIK2) 40S ribosomal protein S25-1|
          Length = 108

 Score = 85.9 bits (211), Expect = 2e-17
 Identities = 42/58 (72%), Positives = 49/58 (84%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRATNT 108
           LLT  PK+K ITPS+L   +RINGS ARRAI++LM +GLIRMVS HSSQQI+TRATNT
Sbjct: 51  LLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

>RS25B_ARATH (Q9T029) 40S ribosomal protein S25-2|
          Length = 108

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 40/58 (68%), Positives = 49/58 (84%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRATNT 108
           LLT  PK+K ITPS+L   +RINGS ARRAI++LM +G+IRMV+ HSSQQI+TRATNT
Sbjct: 51  LLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

>RS25_LYCES (P46301) 40S ribosomal protein S25|
          Length = 108

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 42/58 (72%), Positives = 48/58 (82%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRATNT 108
           LL+  PKYK ITPSVL   LRI+GS AR+AI+DLM RG IRMVS H+SQQI+TRATNT
Sbjct: 51  LLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

>RS25_BRABE (Q8ISN9) 40S ribosomal protein S25|
          Length = 123

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 31/56 (55%), Positives = 41/56 (73%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRAT 114
           L   VP YK ITPSV+   L+I GS AR A+K+L  +G+I++VS HS+Q I+TRAT
Sbjct: 54  LYKEVPSYKLITPSVVSERLKIRGSLARAALKELHSKGMIKLVSKHSAQVIYTRAT 109

>RS25_AMACR (Q94G66) 40S ribosomal protein S25|
          Length = 114

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 31/57 (54%), Positives = 40/57 (70%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRATN 111
           LL+   K K +T + L    RINGS ARRAI++L+ RG I+MV  HSS QI+TR+TN
Sbjct: 50  LLSEAGKQKVVTAATLSERFRINGSLARRAIRELVSRGAIKMVCHHSSLQIYTRSTN 106

>RS25_DROME (P48588) 40S ribosomal protein S25|
          Length = 117

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 31/56 (55%), Positives = 39/56 (69%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRAT 114
           L   VP YK ITPSV+   L+I GS A+RA+ +L E+GLI+ V  H SQ I+TRAT
Sbjct: 57  LYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRAT 112

>RS25_SPOFR (Q962Q5) 40S ribosomal protein S25|
          Length = 119

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 29/56 (51%), Positives = 39/56 (69%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRAT 114
           L   VP+YK ITP+V+   L++ GS ARRA+ +L E+GLI+ V  H  Q I+TRAT
Sbjct: 57  LYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 112

>RS25_SHEEP (Q6Q311) 40S ribosomal protein S25|
          Length = 125

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRAT 114
           L   VP YK ITP+V+   L+I GS AR A+++L+ +GLI++VS H +Q I+TR T
Sbjct: 58  LCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113

>RS25_RAT (P62853) 40S ribosomal protein S25|
          Length = 125

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRAT 114
           L   VP YK ITP+V+   L+I GS AR A+++L+ +GLI++VS H +Q I+TR T
Sbjct: 58  LCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113

>RS25_MOUSE (P62852) 40S ribosomal protein S25|
          Length = 125

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRAT 114
           L   VP YK ITP+V+   L+I GS AR A+++L+ +GLI++VS H +Q I+TR T
Sbjct: 58  LCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113

>RS25_HUMAN (P62851) 40S ribosomal protein S25|
          Length = 125

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRAT 114
           L   VP YK ITP+V+   L+I GS AR A+++L+ +GLI++VS H +Q I+TR T
Sbjct: 58  LCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113

>RS25_BRARE (Q6PBI5) 40S ribosomal protein S25|
          Length = 124

 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRAT 114
           L   VP YK ITP+V+   L+I GS AR A+++L+ +GLI++VS H +Q I+TR T
Sbjct: 57  LYKEVPNYKLITPAVVSERLKIRGSLARAALQELLGKGLIKLVSKHRAQVIYTRNT 112

>RS25_ICTPU (Q90YP9) 40S ribosomal protein S25|
          Length = 124

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 27/56 (48%), Positives = 39/56 (69%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRAT 114
           L   VP YK ITP+V+   L+I GS AR A+ +L+ +G+I++VS H +Q I+TR T
Sbjct: 57  LYKEVPNYKLITPAVVSERLKIRGSLARAALLELLSKGMIKLVSKHRAQVIYTRNT 112

>RS25B_SCHPO (O74172) 40S ribosomal protein S25-B (S31-B)|
          Length = 88

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 29/51 (56%), Positives = 37/51 (72%)
 Frame = -2

Query: 269 VPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRA 117
           VP +K I+ SVL   ++INGS AR AI+DL ERG+I+ V  HS Q I+TRA
Sbjct: 34  VPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTRA 84

>RS25A_SCHPO (P79009) 40S ribosomal protein S25-A (S31-A)|
          Length = 89

 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 28/50 (56%), Positives = 36/50 (72%)
 Frame = -2

Query: 269 VPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTR 120
           VP +K I+ SVL   ++INGS AR AI+DL ERG+I+ V  HS Q I+TR
Sbjct: 34  VPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTR 83

>RS25A_YEAST (Q3E792) 40S ribosomal protein S25-A precursor (S31) (YS23) (RP45)|
          Length = 108

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 26/56 (46%), Positives = 38/56 (67%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRAT 114
           +L  VP Y+ ++ SVL   L+I GS AR A++ L + G+I+ +S HS Q I+TRAT
Sbjct: 50  ILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRAT 105

>RS25_ASHGO (Q75DJ1) 40S ribosomal protein S25|
          Length = 108

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 26/56 (46%), Positives = 37/56 (66%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRAT 114
           +L  VP Y+ ++ SVL   L+I GS AR A++ L   G+I+ +S HS Q I+TRAT
Sbjct: 50  ILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLETEGIIKPISKHSKQAIYTRAT 105

>RS25_NEUCR (Q7SC06) 40S ribosomal protein S25|
          Length = 97

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRA 117
           L   V  Y+ +T + L   L+INGS ARR +KDL E+G I+ V  HS  +I+TRA
Sbjct: 38  LYKDVQSYRLVTVATLVDRLKINGSLARRCLKDLEEKGQIKQVVGHSKMKIYTRA 92

>RS25_CANGA (Q6FPX5) 40S ribosomal protein S25|
          Length = 107

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 25/56 (44%), Positives = 37/56 (66%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRAT 114
           +L  VP Y+ ++ SVL   L+I GS AR A++ L   G+I+ +S HS Q I+TRA+
Sbjct: 50  ILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLEREGIIKPISKHSKQAIYTRAS 105

>RS25B_YEAST (P0C0T4) 40S ribosomal protein S25-B precursor (S31) (YS23) (RP45)|
          Length = 108

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 25/55 (45%), Positives = 37/55 (67%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRA 117
           +L  VP Y+ ++ SVL   L+I GS AR A++ L + G+I+ +S HS Q I+TRA
Sbjct: 50  ILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRA 104

>RS25_CAEEL (P52821) 40S ribosomal protein S25|
          Length = 117

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 24/63 (38%), Positives = 37/63 (58%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRATNT*F 102
           L   V  YK ITPSV+   L++  S A+  +K+L  +GL++ V  H  Q ++TRAT    
Sbjct: 54  LYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEAD 113

Query: 101 III 93
           +I+
Sbjct: 114 VIV 116

>RS25_LEIIN (Q9N9V4) 40S ribosomal protein S25|
          Length = 120

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 24/54 (44%), Positives = 33/54 (61%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTR 120
           L + VPKYK ITPS++   L+I  S A   +K L    LIR+VS  S  +++TR
Sbjct: 50  LRSEVPKYKLITPSIISDRLKIAVSIAAAGLKQLCREKLIRLVSCSSKTRVYTR 103

>RS25_DICDI (Q03409) 40S ribosomal protein S25 (S31)|
          Length = 110

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 22/55 (40%), Positives = 35/55 (63%)
 Frame = -2

Query: 281 LLTXVPKYKQITPSVLXXXLRINGSXARRAIKDLMERGLIRMVSIHSSQQIFTRA 117
           LL  +P  K IT +V+   ++ NGS ARRAIK+L+ +GLI+ +       ++T+A
Sbjct: 55  LLKEMPTAKVITTAVVSERMKCNGSLARRAIKELLSKGLIKQIIKGHGNGVYTKA 109

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 117 GPGEDLLAGVDR---HHPNEPPLHQVLDSPASXRAIDPEXLG 233
           G G    AG DR   HH +  PL   LD PA+ R +DP  LG
Sbjct: 243 GGGGAPSAGGDRGRHHHQHREPL---LDEPAAARRLDPRPLG 281

>KLF2_MOUSE (Q60843) Krueppel-like factor 2 (Lung krueppel-like factor)|
          Length = 354

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 169 GSLGWCLSTPASRSSPGPQTPDLS 98
           G+ G C+  PA R  P P TP LS
Sbjct: 152 GATGACMRGPAGRPPPPPDTPPLS 175

>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +3

Query: 117 GPGEDLLAGVDR---HHPNEPPLHQVLDSPASXRAIDPEXLG 233
           G G     G DR   HH +  PL   LD PA+ R +DP  LG
Sbjct: 251 GGGGAPSGGGDRGRHHHQHREPL---LDEPAAARRLDPRPLG 289

>YR748_MIMIV (Q5UP04) Putative ankyrin repeat protein R748|
          Length = 877

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 22  DIVNLNXTATPXSTGLENTAXEHMIMINQV 111
           D+VN   T TP +  LENT  E+ +MIN +
Sbjct: 582 DVVNTINTITP-NQNLENTFNENNVMINNI 610


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,076,229
Number of Sequences: 219361
Number of extensions: 747028
Number of successful extensions: 2276
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2274
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)