>ACOT8_RAT (Q8VHK0) Acyl-coenzyme A thioesterase 8 (EC 3.1.2.2) (Acyl-CoA|
           thioesterase 8) (Peroxisomal acyl-coenzyme A thioester
           hydrolase 1) (PTE-1) (Peroxisomal long-chain acyl-coA
           thioesterase 1) (Peroxisomal acyl-CoA thioesterase 2)
           (PTE-2)
          Length = 320

 Score =  107 bits (268), Expect = 2e-23
 Identities = 51/108 (47%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
 Frame = -3

Query: 620 EPSLHYWFRARGKLSD-DPALHRCVVAYASDLLYSGVSLNPHRERGLKTYSLSLDHSMWF 444
           EP   +W RARG + + D  +H CV AY SD  + G +L PH+ +    + +SLDHSMWF
Sbjct: 203 EPKQMFWVRARGYIGEGDIKMHCCVAAYISDYAFLGTALLPHQSKYKVNFMVSLDHSMWF 262

Query: 443 HKPVKADDWLLYVIDSPSAHGGRGFVTGRMFNRQGELIVSLTQEALIR 300
           H P +AD W+LY  +SP A G RG V GR++ R G L V+  QE +IR
Sbjct: 263 HAPFRADHWMLYECESPWAGGSRGLVHGRLWRRDGVLAVTCAQEGVIR 310

>ACOT8_MOUSE (P58137) Acyl-coenzyme A thioesterase 8 (EC 3.1.2.2) (Acyl-CoA|
           thioesterase 8) (Peroxisomal acyl-coenzyme A thioester
           hydrolase 1) (PTE-1) (Peroxisomal long-chain acyl-coA
           thioesterase 1) (Peroxisomal acyl-CoA thioesterase 2)
           (PTE-2)
          Length = 320

 Score =  107 bits (266), Expect = 4e-23
 Identities = 51/108 (47%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = -3

Query: 620 EPSLHYWFRARGKLSD-DPALHRCVVAYASDLLYSGVSLNPHRERGLKTYSLSLDHSMWF 444
           EP   +W RARG + + D  +H CV AY SD  + G +L PH+ +    +  SLDHSMWF
Sbjct: 203 EPKQMFWVRARGYIGEGDIKMHCCVAAYISDYAFLGTALLPHQSKYKVNFMASLDHSMWF 262

Query: 443 HKPVKADDWLLYVIDSPSAHGGRGFVTGRMFNRQGELIVSLTQEALIR 300
           H P +AD W+LY  +SP A G RG V GR++ R G L V+  QE +IR
Sbjct: 263 HAPFRADHWMLYECESPWAGGSRGLVHGRLWRRDGVLAVTCAQEGVIR 310

>ACOT8_HUMAN (O14734) Acyl-coenzyme A thioesterase 8 (EC 3.1.2.2) (Acyl-CoA|
           thioesterase 8) (Peroxisomal acyl-coenzyme A thioester
           hydrolase 1) (PTE-1) (Peroxisomal long-chain acyl-coA
           thioesterase 1) (HIV-Nef-associated acyl coA
           thioesterase) (Thioestera
          Length = 319

 Score =  104 bits (260), Expect = 2e-22
 Identities = 50/108 (46%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
 Frame = -3

Query: 620 EPSLHYWFRARGKLSD-DPALHRCVVAYASDLLYSGVSLNPHRERGLKTYSLSLDHSMWF 444
           EP   +W RARG + + D  +H CV AY SD  + G +L PH+ +    + +SLDHSMWF
Sbjct: 202 EPKQMFWVRARGYIGEGDMKMHCCVAAYISDYAFLGTALLPHQWQHKVHFMVSLDHSMWF 261

Query: 443 HKPVKADDWLLYVIDSPSAHGGRGFVTGRMFNRQGELIVSLTQEALIR 300
           H P +AD W+LY  +SP A G RG V GR++ + G L V+  QE +IR
Sbjct: 262 HAPFRADHWMLYECESPWAGGSRGLVHGRLWRQDGVLAVTCAQEGVIR 309

>TESB_ECOLI (P0AGG2) Acyl-CoA thioesterase II (EC 3.1.2.-) (TEII)|
          Length = 285

 Score = 96.3 bits (238), Expect = 7e-20
 Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
 Frame = -3

Query: 620 EPSLHYWFRARGKLSDDPALHRCVVAYASDLLYSGVSLNPHR----ERGLKTYSLSLDHS 453
           EP    W RA G + DD  +H+ ++ YASDL +  V+L PH     E G++    ++DHS
Sbjct: 174 EPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQI--ATIDHS 231

Query: 452 MWFHKPVKADDWLLYVIDSPSAHGGRGFVTGRMFNRQGELIVSLTQEALIR 300
           MWFH+P   ++WLLY ++S SA   RGFV G  + + G L+ S  QE ++R
Sbjct: 232 MWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMR 282

>TESB_ECO57 (P0AGG3) Acyl-CoA thioesterase II (EC 3.1.2.-) (TEII)|
          Length = 285

 Score = 96.3 bits (238), Expect = 7e-20
 Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
 Frame = -3

Query: 620 EPSLHYWFRARGKLSDDPALHRCVVAYASDLLYSGVSLNPHR----ERGLKTYSLSLDHS 453
           EP    W RA G + DD  +H+ ++ YASDL +  V+L PH     E G++    ++DHS
Sbjct: 174 EPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQI--ATIDHS 231

Query: 452 MWFHKPVKADDWLLYVIDSPSAHGGRGFVTGRMFNRQGELIVSLTQEALIR 300
           MWFH+P   ++WLLY ++S SA   RGFV G  + + G L+ S  QE ++R
Sbjct: 232 MWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMR 282

>TESB_HAEIN (P44498) Acyl-CoA thioesterase II (EC 3.1.2.-) (TEII)|
          Length = 286

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
 Frame = -3

Query: 602 WFRARGKLSDDPALHRCVVAYASDLLYSGVSLNPHR----ERGLKTYSLSLDHSMWFHKP 435
           WF+  G+   D  + +C++AY SD      +L+PH     ++G+K    ++DHS+WFH+P
Sbjct: 181 WFKTNGETPLDIKIQQCLLAYFSDFHCILTALHPHEKGFLQKGMKV--ATIDHSIWFHRP 238

Query: 434 VKADDWLLYVIDSPSAHGGRGFVTGRMFNRQGELIVSLTQEALIR 300
              + W L+ I+S +A GGRG   G++F++ G+LI +  QE LIR
Sbjct: 239 FDLNHWHLHAIESNNAFGGRGLAQGQIFSQDGQLIATTQQEGLIR 283

>PTE1_YEAST (P41903) Peroxisomal acyl-coenzyme A thioester hydrolase 1 (EC|
           3.1.2.2) (Peroxisomal long-chain acyl-coA thioesterase
           1)
          Length = 349

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 19/60 (31%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = -3

Query: 479 TYSLSLDHSMWFHKPVKADDWLLYVIDSPSAHGGRGFVTGRMFNRQ-GELIVSLTQEALI 303
           ++S+SLDH+++FH+    ++W+   I +P +H  +  V G+ F+ Q G ++ S++QE  +
Sbjct: 278 SFSVSLDHTIYFHQLPHVNNWIYLKISNPRSHWDKHLVQGKYFDTQSGRIMASVSQEGYV 337

>USH2A_RAT (Q8K3K1) Usherin precursor (Usher syndrome type-2A protein homolog)|
            (Usher syndrome type IIa protein homolog)
          Length = 1512

 Score = 32.7 bits (73), Expect = 0.98
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -3

Query: 371  FVTGRMFNRQGELIVSLTQEALIRRAKTPGQTPRPKL*TVQKSRACTLIFS---FPSLFH 201
            FVTG   +        L    L+  +KTP Q P P+   VQ S A  L +S   FP+   
Sbjct: 1022 FVTGSKCDTCVPGASHLDVNNLLACSKTPSQQPPPRG-RVQSSSAINLSWSPPDFPNAHW 1080

Query: 200  IFHLIYRDSGEIY 162
            + + ++RD  EIY
Sbjct: 1081 LTYTLFRDDSEIY 1093

>C19AA_BRARE (O42145) Cytochrome P450 19A1a (EC 1.14.14.1) (Aromatase) (CYPXIX)|
           (Estrogen synthetase) (P-450AROM)
          Length = 509

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = -3

Query: 653 MRFCQDSKSQHEPSLHYWFRARGKLSDDPALHRCVVAYASDLLYSGVSLNPH 498
           M  C  S + H   L     A+G+L D   L RC+V   S+ L+ GV LN H
Sbjct: 181 MEICTTSTNSHLDDLSQLTDAQGQL-DILNLLRCIVVDVSNRLFLGVPLNEH 231

>CP192_CARAU (O73686) Cytochrome P450 19 type 2 (EC 1.14.14.1) (Ovarian|
           aromatase) (CYPXIXA2) (Estrogen synthetase) (P-450AROM)
          Length = 518

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 653 MRFCQDSKSQHEPSLHYWFRARGKLSDDPALHRCVVAYASDLLYSGVSLNPH 498
           +  C  S + H  +L +   ARG++ D   L RC+V   S+ L+ GV LN H
Sbjct: 181 LEICITSTNTHLDNLSHLMDARGQV-DILNLLRCIVVDISNRLFLGVPLNEH 231

>PLSX_PARUW (Q6MBL1) Fatty acid/phospholipid synthesis protein plsX|
          Length = 339

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 271 LGVCPGVLALLINASWVSDTMSSPCRLNIRPVTNPLPPCADG-LSITYNNQSSALTGL 441
           L   P V  +  N+ + S    SPCR+ I PV+N +    +  +S+    +SS +TGL
Sbjct: 36  LATLPVVAKIRENSVFSSFLSQSPCRIEIHPVSNVIEMDDEPVISVREKKKSSLVTGL 93

>DRL30_ARATH (Q9LZ25) Probable disease resistance protein At5g04720|
          Length = 811

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 533 DLLYSGVSLNPHRERGLKTYSLSLDHSMWF-HKPVKADDW 417
           ++ YSGV L PHR+  L+ +S +LD       K +K+  W
Sbjct: 47  EIQYSGVELTPHRQAQLRMFSETLDKCRKLTEKVLKSSRW 86

>CCA1_CANGA (Q9P4S5) tRNA nucleotidyltransferase, mitochondrial precursor (EC|
           2.7.7.25) (tRNA adenylyltransferase) (tRNA
           CCA-pyrophosphorylase) (CCA-adding enzyme)
          Length = 531

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 294 GSPNQRLLGQRHDELSLPVEHTSGDESPTTVCGWAVDHI*QPVISFDRL-VEPHRVIKTE 470
           G    +LLGQ   +L + +   SG+E  T + G+ ++H       FD+  V+PH + K +
Sbjct: 52  GWVRDKLLGQGSHDLDIAINIMSGEEFATGLNGYLLEH-------FDKYGVKPHSIHKID 104

Query: 471 R 473
           +
Sbjct: 105 K 105

>CHEB_BACSU (Q05522) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 357

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 638 DSKSQHEPSLHYWFRARGKLSD 573
           D+ S+H+PS  Y FR+ GKL+D
Sbjct: 261 DTPSRHKPSADYLFRSVGKLTD 282

>COAD_COREF (Q8FPP9) Phosphopantetheine adenylyltransferase (EC 2.7.7.3)|
           (Pantetheine-phosphate adenylyltransferase) (PPAT)
           (Dephospho-CoA pyrophosphorylase)
          Length = 159

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -3

Query: 515 VSLNPHRERGLKTYSLSLD---HSMWFHKPVKADDWLLYVIDSPSAHGGRGFVTG 360
           V+ NP++  GL T    +D    S      VK D W   ++D  +AHG    V G
Sbjct: 34  VTANPNKNSGLFTVEERMDLIRRSTAHLSNVKVDTWATLLVDYTTAHGIGALVKG 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,392,864
Number of Sequences: 219361
Number of extensions: 2208497
Number of successful extensions: 5466
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5460
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)