| Clone Name | rbags32j13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT024129.1| Zea mays clone EL01N0328C03 mRNA sequence Length = 1879 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 435 tgcagcaggatcctttttgtagatgatcacata 467 |||||||||||||||||||| ||||||| |||| Sbjct: 672 tgcagcaggatcctttttgtggatgatctcata 640
>gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0076K20, complete sequence Length = 127338 Score = 44.1 bits (22), Expect = 0.47 Identities = 52/62 (83%) Strand = Plus / Plus Query: 436 gcagcaggatcctttttgtagatgatcacataagagatgagtaggatatcttgcaggagt 495 ||||||| ||||||||||| |||||| |||| || ||||||| || ||||| |||| || Sbjct: 9569 gcagcagcatcctttttgtggatgatttcataggaaatgagtatgacatctttcaggggt 9628 Query: 496 ct 497 || Sbjct: 9629 ct 9630
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.47 Identities = 52/62 (83%) Strand = Plus / Minus Query: 436 gcagcaggatcctttttgtagatgatcacataagagatgagtaggatatcttgcaggagt 495 ||||||| ||||||||||| |||||| |||| || ||||||| || ||||| |||| || Sbjct: 2717229 gcagcagcatcctttttgtggatgatttcataggaaatgagtatgacatctttcaggggt 2717170 Query: 496 ct 497 || Sbjct: 2717169 ct 2717168
>dbj|AK120416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093B10, full insert sequence Length = 5433 Score = 44.1 bits (22), Expect = 0.47 Identities = 52/62 (83%) Strand = Plus / Minus Query: 436 gcagcaggatcctttttgtagatgatcacataagagatgagtaggatatcttgcaggagt 495 ||||||| ||||||||||| |||||| |||| || ||||||| || ||||| |||| || Sbjct: 3443 gcagcagcatcctttttgtggatgatttcataggaaatgagtatgacatctttcaggggt 3384 Query: 496 ct 497 || Sbjct: 3383 ct 3382
>dbj|AK120409.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091M21, full insert sequence Length = 2643 Score = 44.1 bits (22), Expect = 0.47 Identities = 52/62 (83%) Strand = Plus / Minus Query: 436 gcagcaggatcctttttgtagatgatcacataagagatgagtaggatatcttgcaggagt 495 ||||||| ||||||||||| |||||| |||| || ||||||| || ||||| |||| || Sbjct: 657 gcagcagcatcctttttgtggatgatttcataggaaatgagtatgacatctttcaggggt 598 Query: 496 ct 497 || Sbjct: 597 ct 596
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.47 Identities = 52/62 (83%) Strand = Plus / Minus Query: 436 gcagcaggatcctttttgtagatgatcacataagagatgagtaggatatcttgcaggagt 495 ||||||| ||||||||||| |||||| |||| || ||||||| || ||||| |||| || Sbjct: 2726260 gcagcagcatcctttttgtggatgatttcataggaaatgagtatgacatctttcaggggt 2726201 Query: 496 ct 497 || Sbjct: 2726200 ct 2726199
>gb|AC105173.10| Mus musculus chromosome 8, clone RP23-319J15, complete sequence Length = 186945 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 4 acattacattgtttttgttcccaca 28 ||||||||||||||||||| ||||| Sbjct: 99965 acattacattgtttttgttaccaca 99989
>ref|XM_509677.1| PREDICTED: Pan troglodytes LOC452594 (LOC452594), mRNA Length = 2343 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 accaaactgcaaccttctgcc 413 ||||||||||||||||||||| Sbjct: 1035 accaaactgcaaccttctgcc 1015
>gb|AC122041.4| Mus musculus BAC clone RP24-443H19 from chromosome 16, complete sequence Length = 183268 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 364 caggttctctctacactttttgaaa 388 |||||||||||| |||||||||||| Sbjct: 51816 caggttctctcttcactttttgaaa 51792
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 cttctgccccaattcaacttc 426 ||||||||||||||||||||| Sbjct: 17193 cttctgccccaattcaacttc 17213
>ref|NM_209876.1| Eremothecium gossypii AEL337Cp (AEL337C), mRNA Length = 3294 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 cttctgccccaattcaacttc 426 ||||||||||||||||||||| Sbjct: 714 cttctgccccaattcaacttc 694
>gb|AC151760.1| Ornithorhynchus anatinus chromosome UNK clone OABb-456A1, complete sequence Length = 142934 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 499 ggaattcttcaactttacctcctt 522 ||||||||| |||||||||||||| Sbjct: 130200 ggaattcttgaactttacctcctt 130177
>gb|AC163021.5| Mus musculus chromosome 15, clone RP23-228E13, complete sequence Length = 215165 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ttacattgtttttgttccca 26 |||||||||||||||||||| Sbjct: 213549 ttacattgtttttgttccca 213530
>emb|BX469919.10| Zebrafish DNA sequence from clone DKEY-15J7 in linkage group 16, complete sequence Length = 219865 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tggggccattataactactt 202 |||||||||||||||||||| Sbjct: 144807 tggggccattataactactt 144788
>gb|AC104640.3| Homo sapiens 3 BAC RP11-809F4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181345 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 actttttgaaactgtaccaa 397 |||||||||||||||||||| Sbjct: 146602 actttttgaaactgtaccaa 146621
>gb|AC026423.9| Homo sapiens chromosome 16 clone CTD-2169M19, complete sequence Length = 116130 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 gaaacttgtgccagaaaaca 63 |||||||||||||||||||| Sbjct: 41544 gaaacttgtgccagaaaaca 41563
>dbj|AK174648.1| Ciona intestinalis cDNA, clone:cign014n16, full insert sequence Length = 4157 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 aggatcctttttgtagatga 460 |||||||||||||||||||| Sbjct: 1257 aggatcctttttgtagatga 1238
>emb|AL132777.4|CNS01DTI Human chromosome 14 DNA sequence BAC R-307P22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 191464 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 cagaaaacaaatagatggta 74 |||||||||||||||||||| Sbjct: 188382 cagaaaacaaatagatggta 188401
>emb|AL049874.3|CNS0000Q Human chromosome 14 DNA sequence BAC R-1042B17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 193047 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 cagaaaacaaatagatggta 74 |||||||||||||||||||| Sbjct: 164089 cagaaaacaaatagatggta 164070
>gb|AC110196.9| Mus musculus chromosome 15, clone RP24-343E7, complete sequence Length = 154367 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ttacattgtttttgttccca 26 |||||||||||||||||||| Sbjct: 119142 ttacattgtttttgttccca 119161 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,720,922 Number of Sequences: 3902068 Number of extensions: 4720922 Number of successful extensions: 97241 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97177 Number of HSP's gapped (non-prelim): 64 length of query: 543 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 520 effective length of database: 17,143,297,704 effective search space: 8914514806080 effective search space used: 8914514806080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)