ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32j13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT024129.1| Zea mays clone EL01N0328C03 mRNA sequence 50 0.008
2gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.47
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
4dbj|AK120416.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.47
5dbj|AK120409.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.47
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.47
7gb|AC105173.10| Mus musculus chromosome 8, clone RP23-319J15, co... 42 1.9
8ref|XM_509677.1| PREDICTED: Pan troglodytes LOC452594 (LOC452594... 42 1.9
9gb|AC122041.4| Mus musculus BAC clone RP24-443H19 from chromosom... 42 1.9
10gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.9
11ref|NM_209876.1| Eremothecium gossypii AEL337Cp (AEL337C), mRNA 42 1.9
12gb|AC151760.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 7.4
13gb|AC163021.5| Mus musculus chromosome 15, clone RP23-228E13, co... 40 7.4
14emb|BX469919.10| Zebrafish DNA sequence from clone DKEY-15J7 in ... 40 7.4
15gb|AC104640.3| Homo sapiens 3 BAC RP11-809F4 (Roswell Park Cance... 40 7.4
16gb|AC026423.9| Homo sapiens chromosome 16 clone CTD-2169M19, com... 40 7.4
17dbj|AK174648.1| Ciona intestinalis cDNA, clone:cign014n16, full ... 40 7.4
18emb|AL132777.4|CNS01DTI Human chromosome 14 DNA sequence BAC R-3... 40 7.4
19emb|AL049874.3|CNS0000Q Human chromosome 14 DNA sequence BAC R-1... 40 7.4
20gb|AC110196.9| Mus musculus chromosome 15, clone RP24-343E7, com... 40 7.4

>gb|BT024129.1| Zea mays clone EL01N0328C03 mRNA sequence
          Length = 1879

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 435 tgcagcaggatcctttttgtagatgatcacata 467
           |||||||||||||||||||| ||||||| ||||
Sbjct: 672 tgcagcaggatcctttttgtggatgatctcata 640



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>gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0076K20, complete sequence
          Length = 127338

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                        
Query: 436  gcagcaggatcctttttgtagatgatcacataagagatgagtaggatatcttgcaggagt 495
            ||||||| ||||||||||| ||||||  |||| || ||||||| || ||||| |||| ||
Sbjct: 9569 gcagcagcatcctttttgtggatgatttcataggaaatgagtatgacatctttcaggggt 9628

              
Query: 496  ct 497
            ||
Sbjct: 9629 ct 9630



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                           
Query: 436     gcagcaggatcctttttgtagatgatcacataagagatgagtaggatatcttgcaggagt 495
               ||||||| ||||||||||| ||||||  |||| || ||||||| || ||||| |||| ||
Sbjct: 2717229 gcagcagcatcctttttgtggatgatttcataggaaatgagtatgacatctttcaggggt 2717170

                 
Query: 496     ct 497
               ||
Sbjct: 2717169 ct 2717168



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>dbj|AK120416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093B10, full
            insert sequence
          Length = 5433

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 436  gcagcaggatcctttttgtagatgatcacataagagatgagtaggatatcttgcaggagt 495
            ||||||| ||||||||||| ||||||  |||| || ||||||| || ||||| |||| ||
Sbjct: 3443 gcagcagcatcctttttgtggatgatttcataggaaatgagtatgacatctttcaggggt 3384

              
Query: 496  ct 497
            ||
Sbjct: 3383 ct 3382



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>dbj|AK120409.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091M21, full
           insert sequence
          Length = 2643

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                       
Query: 436 gcagcaggatcctttttgtagatgatcacataagagatgagtaggatatcttgcaggagt 495
           ||||||| ||||||||||| ||||||  |||| || ||||||| || ||||| |||| ||
Sbjct: 657 gcagcagcatcctttttgtggatgatttcataggaaatgagtatgacatctttcaggggt 598

             
Query: 496 ct 497
           ||
Sbjct: 597 ct 596



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                           
Query: 436     gcagcaggatcctttttgtagatgatcacataagagatgagtaggatatcttgcaggagt 495
               ||||||| ||||||||||| ||||||  |||| || ||||||| || ||||| |||| ||
Sbjct: 2726260 gcagcagcatcctttttgtggatgatttcataggaaatgagtatgacatctttcaggggt 2726201

                 
Query: 496     ct 497
               ||
Sbjct: 2726200 ct 2726199



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>gb|AC105173.10| Mus musculus chromosome 8, clone RP23-319J15, complete sequence
          Length = 186945

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 4     acattacattgtttttgttcccaca 28
             ||||||||||||||||||| |||||
Sbjct: 99965 acattacattgtttttgttaccaca 99989



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>ref|XM_509677.1| PREDICTED: Pan troglodytes LOC452594 (LOC452594), mRNA
          Length = 2343

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 393  accaaactgcaaccttctgcc 413
            |||||||||||||||||||||
Sbjct: 1035 accaaactgcaaccttctgcc 1015



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>gb|AC122041.4| Mus musculus BAC clone RP24-443H19 from chromosome 16, complete
             sequence
          Length = 183268

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 364   caggttctctctacactttttgaaa 388
             |||||||||||| ||||||||||||
Sbjct: 51816 caggttctctcttcactttttgaaa 51792



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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
             complete sequence
          Length = 1519138

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 406   cttctgccccaattcaacttc 426
             |||||||||||||||||||||
Sbjct: 17193 cttctgccccaattcaacttc 17213



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>ref|NM_209876.1| Eremothecium gossypii AEL337Cp (AEL337C), mRNA
          Length = 3294

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 406 cttctgccccaattcaacttc 426
           |||||||||||||||||||||
Sbjct: 714 cttctgccccaattcaacttc 694



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>gb|AC151760.1| Ornithorhynchus anatinus chromosome UNK clone OABb-456A1, complete
              sequence
          Length = 142934

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 499    ggaattcttcaactttacctcctt 522
              ||||||||| ||||||||||||||
Sbjct: 130200 ggaattcttgaactttacctcctt 130177



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>gb|AC163021.5| Mus musculus chromosome 15, clone RP23-228E13, complete sequence
          Length = 215165

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      ttacattgtttttgttccca 26
              ||||||||||||||||||||
Sbjct: 213549 ttacattgtttttgttccca 213530



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>emb|BX469919.10| Zebrafish DNA sequence from clone DKEY-15J7 in linkage group 16, complete
              sequence
          Length = 219865

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    tggggccattataactactt 202
              ||||||||||||||||||||
Sbjct: 144807 tggggccattataactactt 144788



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>gb|AC104640.3| Homo sapiens 3 BAC RP11-809F4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181345

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 378    actttttgaaactgtaccaa 397
              ||||||||||||||||||||
Sbjct: 146602 actttttgaaactgtaccaa 146621



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>gb|AC026423.9| Homo sapiens chromosome 16 clone CTD-2169M19, complete sequence
          Length = 116130

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    gaaacttgtgccagaaaaca 63
             ||||||||||||||||||||
Sbjct: 41544 gaaacttgtgccagaaaaca 41563



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>dbj|AK174648.1| Ciona intestinalis cDNA, clone:cign014n16, full insert sequence
          Length = 4157

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  aggatcctttttgtagatga 460
            ||||||||||||||||||||
Sbjct: 1257 aggatcctttttgtagatga 1238



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>emb|AL132777.4|CNS01DTI Human chromosome 14 DNA sequence BAC R-307P22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 191464

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     cagaaaacaaatagatggta 74
              ||||||||||||||||||||
Sbjct: 188382 cagaaaacaaatagatggta 188401



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>emb|AL049874.3|CNS0000Q Human chromosome 14 DNA sequence BAC R-1042B17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 193047

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     cagaaaacaaatagatggta 74
              ||||||||||||||||||||
Sbjct: 164089 cagaaaacaaatagatggta 164070



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>gb|AC110196.9| Mus musculus chromosome 15, clone RP24-343E7, complete sequence
          Length = 154367

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      ttacattgtttttgttccca 26
              ||||||||||||||||||||
Sbjct: 119142 ttacattgtttttgttccca 119161


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,720,922
Number of Sequences: 3902068
Number of extensions: 4720922
Number of successful extensions: 97241
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97177
Number of HSP's gapped (non-prelim): 64
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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