>CAP10_ARATH (Q9LHS0) Putative clathrin assembly protein At5g35200|
          Length = 544

 Score = 37.0 bits (84), Expect = 0.047
 Identities = 19/27 (70%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -2

Query: 619 DLLTLDSLYEDANRRASQP-ASYNPWE 542
           D LTLDSLYEDA R + Q   SYNPWE
Sbjct: 430 DKLTLDSLYEDAIRVSQQQNRSYNPWE 456

>NED4L_PONPY (Q5RBF2) E3 ubiquitin-protein ligase NEDD4-like protein (EC|
           6.3.2.-)
          Length = 959

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
 Frame = +1

Query: 55  SIRIRQTSYTPLLPINGRVTPP----IPT*ATKPSQWQPRKKNMGRTKFSSVNHRL---D 213
           S R+R  S T  +   G + PP    + T    PS W+ RK   GRT + + N+R     
Sbjct: 339 SSRLRSCSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEERKDAKGRTYYVNHNNRTTTWT 398

Query: 214 QPGVRIALDGVEG 252
           +P +++A DG  G
Sbjct: 399 RPIMQLAEDGASG 411

>LSHR_HUMAN (P22888) Lutropin-choriogonadotropic hormone receptor precursor|
           (LH/CG-R) (LSH-R) (Luteinizing hormone receptor) (LHR)
          Length = 699

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 305 LRPPVPNTLTAALAPG*CPSTPSRAMRTPG 216
           L+PP+P  L  AL P  C   P  A+R PG
Sbjct: 17  LQPPLPRALREALCPEPCNCVPDGALRCPG 46

>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)|
          Length = 2571

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +3

Query: 195  CEPPARSARCTHCPGRRGGASS---RCQRRRKGVGHRRAQTGWH 317
            C P      C  CPG  GG  S   +CQ R  G G  R Q G+H
Sbjct: 1321 CCPGFFGTLCEPCPGGLGGVCSGHGQCQDRFLGNGECRCQEGFH 1364

>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 15  EKRHIQNTQAPTRIDPNPTNQLHSFAPDQRPCHSPHSYLSYKAVTMAAKK--KEHGQNK 185
           EK   QN+    + D + + Q  +F   +   HS ++++  KAV M  KK  K+ GQ K
Sbjct: 364 EKLKQQNSNPSVKKDGSKSKQRLNFTSKEGKSHSKNAFIGEKAVLMKKKKGQKKKGQTK 422

>Y3466_MYCTU (O06331) Hypothetical protein Rv3466/MT3572|
          Length = 222

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 201 PPARSARCTHCPGRRGGASSRCQRRRKGVGHRRA 302
           PPAR   C H PGRR    SR  R+ + +  RRA
Sbjct: 140 PPARRGGCVHPPGRR----SRPGRQSRSISSRRA 169

>Y1614_MYCBO (P0A5F2) Hypothetical protein Mb1614c|
          Length = 222

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 201 PPARSARCTHCPGRRGGASSRCQRRRKGVGHRRA 302
           PPAR   C H PGRR    SR  R+ + +  RRA
Sbjct: 140 PPARRGGCVHPPGRR----SRPGRQSRSISSRRA 169

>Y1588_MYCTU (P0A5F1) Hypothetical protein Rv1588c/MT1623|
          Length = 222

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 201 PPARSARCTHCPGRRGGASSRCQRRRKGVGHRRA 302
           PPAR   C H PGRR    SR  R+ + +  RRA
Sbjct: 140 PPARRGGCVHPPGRR----SRPGRQSRSISSRRA 169

>LSHR_PIG (P16582) Lutropin-choriogonadotropic hormone receptor precursor|
           (LH/CG-R) (LSH-R) (Luteinizing hormone receptor)
          Length = 696

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 305 LRPPVPNTLTAALAPG*CPSTPSRAMRTPG 216
           L PP+P TL  A  P  C   P  A+R PG
Sbjct: 17  LPPPLPQTLLGAPCPEPCSCRPDGALRCPG 46

>EX5C_MYCTU (P96921) Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)|
          Length = 1097

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 565  PASYNPWETTRCRPGPDDATASSNA-GPVLRLERVRGAP 452
            P +   W+T R RPG DDA A   A GP    E + G P
Sbjct: 1028 PPARECWQTNRFRPGDDDAPAHVRAWGPRAPFEVLLGKP 1066

>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 4391

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 168  EHGQNKVFICEPPARSARC--THCPGRRGGASSRCQRRRKGVGHRRAQTGWH 317
            EH +N   + EP      C  T C    G +  RCQ+   G GH  A++ WH
Sbjct: 4141 EHEENPCQLREPCLHGGTCQGTRCLCLPGFSGPRCQQ---GSGHGIAESDWH 4189

>SIM1_HUMAN (P81133) Single-minded homolog 1|
          Length = 766

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 14  RETPYTKYTSAYTDRSESDKPATLLCSRSTAVSLPPFLPELQ---SRHNGSQEKRTWAEQ 184
           R +PY +Y+  +T+RSESD  +    S  T  + P  L       S+H+ S   R ++++
Sbjct: 383 RTSPYPQYSGFHTERSESDHDSQWGGSPLTDTASPQLLDPADRPGSQHDASCAYRQFSDR 442

Query: 185 S 187
           S
Sbjct: 443 S 443

>AMIB_SALTY (P26366) N-acetylmuramoyl-L-alanine amidase amiB precursor (EC|
           3.5.1.28)
          Length = 439

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 20/118 (16%)
 Frame = +1

Query: 13  TRNAIYKIHKRLHGSIRIRQTSYTPLLPINGRVTPPIPT*ATKPSQWQPRKKNMGRTKFS 192
           T N   +  KR +G       +YT +  IN  V PP P    K  +  PR     R  F 
Sbjct: 103 TENGKTEAVKRQNGG------NYTVIFTINADVPPPPPPVVAKRVESAPRPTEPARNPFK 156

Query: 193 SVNHRL---------DQPGVR----------IALD-GVEGHHPGASAAVRVLGTGGRK 306
           S + RL          +P  R          IA+D G  G  PGA      +G GG +
Sbjct: 157 SSDDRLTGVTSSNTVTRPAARASAGAGDKVVIAIDAGHGGQDPGA------IGPGGTR 208

>SIM1_MOUSE (Q61045) Single-minded homolog 1 (mSIM1)|
          Length = 765

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 14  RETPYTKYTSAYTDRSESDKPATLLCSRSTAVSLPPFLPELQSRHNGSQEKRTWAEQSF 190
           R +PY +Y+  +T+RSESD  +    S  T  + P     L     GSQ + + A + F
Sbjct: 383 RTSPYPQYSGFHTERSESDHDSQWGGSPLTDTASPQL---LDPERPGSQHELSCAYRQF 438

>PRP1_MANSE (O44249) Phenoloxidase subunit 1 (EC 1.14.18.1) (proPO-P1)|
          Length = 684

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 199 NHRLDQPGVRIALDGVEGHHP 261
           N RLD PGVR++  G+EG  P
Sbjct: 424 NERLDFPGVRVSSVGIEGARP 444

>PPNK_CAUCR (P58056) Probable inorganic polyphosphate/ATP-NAD kinase (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase)
          Length = 260

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 52  GSIRIRQTSYTPLLPINGRVTPPIPT*ATKPSQWQ 156
           GS     +++ P++PI+GRV    P  A +P +W+
Sbjct: 158 GSTAYNLSAHGPIIPIDGRVLALTPISAFRPRRWR 192

>ACK2_BOVIN (O02742) Activated CDC42 kinase 2 (EC 2.7.10.2) (ACK-2)|
          Length = 747

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 572 EPARKLQPLGDHPVPPRP 519
           EPAR L P G  PVPP P
Sbjct: 689 EPARLLPPAGGQPVPPTP 706

>GSA_CLOAB (Q97MU2) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)|
           (GSA) (Glutamate-1-semialdehyde aminotransferase)
           (GSA-AT)
          Length = 422

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -1

Query: 164 FLGC---HCDGFVAQVGMGGVTRPLIGSKGV 81
           F GC   H DGF+ + G G +T+ + GS GV
Sbjct: 137 FAGCYHGHFDGFLVEAGSGVLTQNIPGSPGV 167


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,082,543
Number of Sequences: 219361
Number of extensions: 1672034
Number of successful extensions: 6363
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6356
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)