| Clone Name | rbags32j11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185682.1| Oryza sativa (japonica cultivar-group), Ozsa8033 predicted mRNA Length = 1743 Score = 115 bits (58), Expect = 2e-22 Identities = 100/114 (87%) Strand = Plus / Minus Query: 382 ggccatcatcatctgctgctgaagcatgaaagcctgctgctgctgggccatggcggccat 441 ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||| Sbjct: 1560 ggccatcatcatctgctgctggagcatgaaggcctgctgctgctgcgccatggcggtcat 1501 Query: 442 ctgcaccgcatggggcgccgcgtacccgttcgagccgtagaacgggtcctgcat 495 |||||| || ||||||||||| ||| | ||| ||||||||||||| ||||| Sbjct: 1500 ctgcacgttgtgcggcgccgcgtagccgctggaggcgtagaacgggtcgtgcat 1447 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 543 tcccaggggttgtagcttgcgggctggctcgctcgtcggttcgcgtcttcgtataggctg 602 ||||| ||||||||||| | ||||||||||||| ||||||||||| ||||| |||||| Sbjct: 1391 tcccatgggttgtagctcgtcggctggctcgctctccggttcgcgtcgtcgtacaggctg 1332 Query: 603 tcaagggtgagcaagtcc 620 || || |||||||||||| Sbjct: 1331 tcgagcgtgagcaagtcc 1314
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 115 bits (58), Expect = 2e-22 Identities = 100/114 (87%) Strand = Plus / Plus Query: 382 ggccatcatcatctgctgctgaagcatgaaagcctgctgctgctgggccatggcggccat 441 ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||| Sbjct: 3800761 ggccatcatcatctgctgctggagcatgaaggcctgctgctgctgcgccatggcggtcat 3800820 Query: 442 ctgcaccgcatggggcgccgcgtacccgttcgagccgtagaacgggtcctgcat 495 |||||| || ||||||||||| ||| | ||| ||||||||||||| ||||| Sbjct: 3800821 ctgcacgttgtgcggcgccgcgtagccgctggaggcgtagaacgggtcgtgcat 3800874 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 543 tcccaggggttgtagcttgcgggctggctcgctcgtcggttcgcgtcttcgtataggctg 602 ||||| ||||||||||| | ||||||||||||| ||||||||||| ||||| |||||| Sbjct: 3800930 tcccatgggttgtagctcgtcggctggctcgctctccggttcgcgtcgtcgtacaggctg 3800989 Query: 603 tcaagggtgagcaagtcc 620 || || |||||||||||| Sbjct: 3800990 tcgagcgtgagcaagtcc 3801007
>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0015E04 Length = 152046 Score = 115 bits (58), Expect = 2e-22 Identities = 100/114 (87%) Strand = Plus / Plus Query: 382 ggccatcatcatctgctgctgaagcatgaaagcctgctgctgctgggccatggcggccat 441 ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||| Sbjct: 58715 ggccatcatcatctgctgctggagcatgaaggcctgctgctgctgcgccatggcggtcat 58774 Query: 442 ctgcaccgcatggggcgccgcgtacccgttcgagccgtagaacgggtcctgcat 495 |||||| || ||||||||||| ||| | ||| ||||||||||||| ||||| Sbjct: 58775 ctgcacgttgtgcggcgccgcgtagccgctggaggcgtagaacgggtcgtgcat 58828 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 543 tcccaggggttgtagcttgcgggctggctcgctcgtcggttcgcgtcttcgtataggctg 602 ||||| ||||||||||| | ||||||||||||| ||||||||||| ||||| |||||| Sbjct: 58884 tcccatgggttgtagctcgtcggctggctcgctctccggttcgcgtcgtcgtacaggctg 58943 Query: 603 tcaagggtgagcaagtcc 620 || || |||||||||||| Sbjct: 58944 tcgagcgtgagcaagtcc 58961
>dbj|AK100481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096B16, full insert sequence Length = 2156 Score = 115 bits (58), Expect = 2e-22 Identities = 100/114 (87%) Strand = Plus / Minus Query: 382 ggccatcatcatctgctgctgaagcatgaaagcctgctgctgctgggccatggcggccat 441 ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||| Sbjct: 1659 ggccatcatcatctgctgctggagcatgaaggcctgctgctgctgcgccatggcggtcat 1600 Query: 442 ctgcaccgcatggggcgccgcgtacccgttcgagccgtagaacgggtcctgcat 495 |||||| || ||||||||||| ||| | ||| ||||||||||||| ||||| Sbjct: 1599 ctgcacgttgtgcggcgccgcgtagccgctggaggcgtagaacgggtcgtgcat 1546 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 543 tcccaggggttgtagcttgcgggctggctcgctcgtcggttcgcgtcttcgtataggctg 602 ||||| ||||||||||| | ||||||||||||| ||||||||||| ||||| |||||| Sbjct: 1490 tcccatgggttgtagctcgtcggctggctcgctctccggttcgcgtcgtcgtacaggctg 1431 Query: 603 tcaagggtgagcaagtcc 620 || || |||||||||||| Sbjct: 1430 tcgagcgtgagcaagtcc 1413
>gb|BT009509.1| Triticum aestivum clone wr1.pk0091.g6:fis, full insert mRNA sequence Length = 1699 Score = 107 bits (54), Expect = 4e-20 Identities = 63/66 (95%) Strand = Plus / Minus Query: 122 ttcctacctgagctacaaagccgtcacaatggcagccaagaaaaaagaacatgggcagaa 181 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1443 ttcctacttgagctacaaagccgtcacaatggcagccaagaaaaatgaacatgggcagaa 1384 Query: 182 caaagt 187 | |||| Sbjct: 1383 ccaagt 1378 Score = 95.6 bits (48), Expect = 2e-16 Identities = 57/60 (95%) Strand = Plus / Minus Query: 4 cctgcacatacgagaaacgccatatacaaaatacacaagcgcctacacggatcgatccga 63 |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1549 cctgcacagacgaaaaacaccatatacaaaatacacaagcgcctacacggatcgatccga 1490
>dbj|AK058599.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-H06, full insert sequence Length = 1372 Score = 107 bits (54), Expect = 4e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 382 ggccatcatcatctgctgctgaagcatgaaagcctgctgctgctgggccatggcggccat 441 ||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||| ||| Sbjct: 843 ggccatcatcatctgctgctggagcatgaaggcctgccgctgctgcgccatggcggtcat 784 Query: 442 ctgcaccgcatggggcgccgcgtacccgttcgagccgtagaacgggtcctgcat 495 |||||| || ||||||||||| ||| | ||| ||||||||||||| ||||| Sbjct: 783 ctgcacgttgtgcggcgccgcgtagccgctggaggcgtagaacgggtcgtgcat 730 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 543 tcccaggggttgtagcttgcgggctggctcgctcgtcggttcgcgtcttcgtataggctg 602 ||||| ||||||||||| | ||||||||||||| ||||||||||| ||||| |||||| Sbjct: 674 tcccatgggttgtagctcgtcggctggctcgctctccggttcgcgtcgtcgtacaggctg 615 Query: 603 tcaagggtgagcaagtcc 620 || || |||||||||||| Sbjct: 614 tcgagcgtgagcaagtcc 597
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 542 ctcccaggggttgtagcttgcgggctggctcgctcgtcggttcgcgtcttcgtataggct 601 |||||||||||||||||||||| ||| |||| |||||| ||| || | ||||||||| Sbjct: 34278412 ctcccaggggttgtagcttgcgttctgttgcgcttgtcggtgcgcctcgttgtataggct 34278353 Query: 602 gtcaagggtgagcaagtcc 620 ||||||||||||||||||| Sbjct: 34278352 gtcaagggtgagcaagtcc 34278334 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 415 ctgctgctgctgggccatggcggccatctgcac 447 |||||||||||| |||||||||||||||||||| Sbjct: 34278535 ctgctgctgctgcgccatggcggccatctgcac 34278503 Score = 44.1 bits (22), Expect = 0.54 Identities = 28/30 (93%) Strand = Plus / Minus Query: 468 cgttcgagccgtagaacgggtcctgcattg 497 |||||||| |||||||||||| |||||||| Sbjct: 34278482 cgttcgaggcgtagaacgggttctgcattg 34278453
>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0689B12 Length = 154745 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 542 ctcccaggggttgtagcttgcgggctggctcgctcgtcggttcgcgtcttcgtataggct 601 |||||||||||||||||||||| ||| |||| |||||| ||| || | ||||||||| Sbjct: 113685 ctcccaggggttgtagcttgcgttctgttgcgcttgtcggtgcgcctcgttgtataggct 113626 Query: 602 gtcaagggtgagcaagtcc 620 ||||||||||||||||||| Sbjct: 113625 gtcaagggtgagcaagtcc 113607 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 415 ctgctgctgctgggccatggcggccatctgcac 447 |||||||||||| |||||||||||||||||||| Sbjct: 113808 ctgctgctgctgcgccatggcggccatctgcac 113776 Score = 44.1 bits (22), Expect = 0.54 Identities = 28/30 (93%) Strand = Plus / Minus Query: 468 cgttcgagccgtagaacgggtcctgcattg 497 |||||||| |||||||||||| |||||||| Sbjct: 113755 cgttcgaggcgtagaacgggttctgcattg 113726
>dbj|AK101538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048F22, full insert sequence Length = 2176 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 542 ctcccaggggttgtagcttgcgggctggctcgctcgtcggttcgcgtcttcgtataggct 601 |||||||||||||||||||||| ||| |||| |||||| ||| || | ||||||||| Sbjct: 1543 ctcccaggggttgtagcttgcgttctgttgcgcttgtcggtgcgcctcgttgtataggct 1484 Query: 602 gtcaagggtgagcaagtcc 620 ||||||||||||||||||| Sbjct: 1483 gtcaagggtgagcaagtcc 1465 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 415 ctgctgctgctgggccatggcggccatctgcac 447 |||||||||||| |||||||||||||||||||| Sbjct: 1666 ctgctgctgctgcgccatggcggccatctgcac 1634 Score = 44.1 bits (22), Expect = 0.54 Identities = 28/30 (93%) Strand = Plus / Minus Query: 468 cgttcgagccgtagaacgggtcctgcattg 497 |||||||| |||||||||||| |||||||| Sbjct: 1613 cgttcgaggcgtagaacgggttctgcattg 1584
>gb|AY326464.1| Homo sapiens putative protein STRF8 (STRF8) mRNA, complete cds Length = 3239 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 415 ctgctgctgctgggccatggcggc 438 |||||||||||||||||||||||| Sbjct: 93 ctgctgctgctgggccatggcggc 116
>gb|AY358646.1| Homo sapiens clone DNA46776 disulfide isomerase (UNQ364) mRNA, complete cds Length = 2956 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 415 ctgctgctgctgggccatggcggc 438 |||||||||||||||||||||||| Sbjct: 99 ctgctgctgctgggccatggcggc 122
>emb|AL133541.21| Human DNA sequence from clone RP1-126E20 on chromosome 6 Contains the 3' end of the BMP6 gene for bone morphogenetic protein 6, the gene for a novel protein similar to protein disulfide isomerases and a CpG island, complete sequence Length = 117952 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 415 ctgctgctgctgggccatggcggc 438 |||||||||||||||||||||||| Sbjct: 106703 ctgctgctgctgggccatggcggc 106680
>dbj|AK098089.1| Homo sapiens cDNA FLJ40770 fis, clone TRACH2004183, weakly similar to Aedes triseriatus disulfide-isomerase mRNA Length = 2492 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 415 ctgctgctgctgggccatggcggc 438 |||||||||||||||||||||||| Sbjct: 79 ctgctgctgctgggccatggcggc 102
>dbj|AK075291.1| Homo sapiens cDNA FLJ90810 fis, clone Y79AA1000876, weakly similar to PROTEIN DISULFIDE ISOMERASE-RELATED PROTEIN PRECURSOR Length = 2915 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 415 ctgctgctgctgggccatggcggc 438 |||||||||||||||||||||||| Sbjct: 79 ctgctgctgctgggccatggcggc 102
>emb|CR593245.1| full-length cDNA clone CS0DG003YG13 of B cells (Ramos cell line) of Homo sapiens (human) Length = 1605 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 415 ctgctgctgctgggccatggcggc 438 |||||||||||||||||||||||| Sbjct: 72 ctgctgctgctgggccatggcggc 95
>ref|NM_030810.2| Homo sapiens thioredoxin domain containing 5 (TXNDC5), transcript variant 1, mRNA Length = 2970 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 415 ctgctgctgctgggccatggcggc 438 |||||||||||||||||||||||| Sbjct: 99 ctgctgctgctgggccatggcggc 122
>dbj|AP004468.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09A24, TM0003, complete sequence Length = 88828 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 406 catgaaagcctgctgctgctgggccatggcggccatctg 444 |||||||||||||||||| | || |||||| |||||||| Sbjct: 24958 catgaaagcctgctgctggttggacatggctgccatctg 24920
>ref|XM_516580.1| PREDICTED: Pan troglodytes similar to Forkhead box protein P1 (HSPC215) (LOC460504), mRNA Length = 2015 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 1443 ctgctgttgaagcatgagggcctgctgctgctgg 1410
>ref|XM_878792.1| PREDICTED: Bos taurus similar to Forkhead box protein P1, transcript variant 13 (LOC515903), mRNA Length = 6922 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 740 ctgctgttgaagcatgagggcctgctgctgctgg 707
>ref|XM_866608.1| PREDICTED: Bos taurus similar to Forkhead box protein P1, transcript variant 3 (LOC515903), mRNA Length = 6922 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 740 ctgctgttgaagcatgagggcctgctgctgctgg 707
>ref|XM_878731.1| PREDICTED: Bos taurus similar to Forkhead box protein P1, transcript variant 12 (LOC515903), mRNA Length = 7223 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 1044 ctgctgttgaagcatgagggcctgctgctgctgg 1011
>ref|XM_878702.1| PREDICTED: Bos taurus similar to Forkhead box protein P1, transcript variant 11 (LOC515903), mRNA Length = 6925 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 737 ctgctgttgaagcatgagggcctgctgctgctgg 704
>ref|XM_878635.1| PREDICTED: Bos taurus similar to Forkhead box protein P1, transcript variant 9 (LOC515903), mRNA Length = 6512 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 333 ctgctgttgaagcatgagggcctgctgctgctgg 300
>ref|XM_878608.1| PREDICTED: Bos taurus similar to Forkhead box protein P1, transcript variant 8 (LOC515903), mRNA Length = 6724 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 533 ctgctgttgaagcatgagggcctgctgctgctgg 500
>ref|XM_594007.2| PREDICTED: Bos taurus similar to Forkhead box protein P1, transcript variant 1 (LOC515903), mRNA Length = 6308 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 123 ctgctgttgaagcatgagggcctgctgctgctgg 90
>ref|XM_878466.1| PREDICTED: Bos taurus similar to Forkhead box protein P1, transcript variant 5 (LOC515903), mRNA Length = 6041 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 123 ctgctgttgaagcatgagggcctgctgctgctgg 90
>ref|XM_878432.1| PREDICTED: Bos taurus similar to Forkhead box protein P1, transcript variant 4 (LOC515903), mRNA Length = 2191 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 533 ctgctgttgaagcatgagggcctgctgctgctgg 500
>gb|BC064764.1| Mus musculus forkhead box P1, mRNA (cDNA clone MGC:76591 IMAGE:30430449), complete cds Length = 2348 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 658 ctgctgttgaagcatgagggcctgctgctgctgg 625
>ref|NM_053202.1| Mus musculus forkhead box P1 (Foxp1), mRNA Length = 2118 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 513 ctgctgttgaagcatgagggcctgctgctgctgg 480
>ref|XM_504966.1| Yarrowia lipolytica CLIB122, YALI0F03839g predicted mRNA Length = 1611 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 382 ggccatcatcatctgctgctgaagca 407 |||||||||| ||||||||||||||| Sbjct: 1278 ggccatcatcttctgctgctgaagca 1253
>ref|XM_788769.1| PREDICTED: Strongylocentrotus purpuratus similar to tRNA selenocysteine associated protein (LOC589116), partial mRNA Length = 1431 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 411 aagcctgctgctgctgggccat 432 |||||||||||||||||||||| Sbjct: 703 aagcctgctgctgctgggccat 682
>ref|NM_032682.4| Homo sapiens forkhead box P1 (FOXP1), transcript variant 1, mRNA Length = 6222 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 949 ctgctgttgaagcatgagggcctgctgctgctgg 916
>dbj|AK074569.1| Homo sapiens cDNA FLJ90088 fis, clone HEMBA1005246 Length = 1889 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 241 ctgctgttgaagcatgagggcctgctgctgctgg 208
>dbj|AK027264.1| Homo sapiens cDNA FLJ14358 fis, clone HEMBA1000158, weakly similar to HEPATOCYTE NUCLEAR FACTOR 3-GAMMA Length = 1973 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 319 ctgctgttgaagcatgagggcctgctgctgctgg 286
>dbj|AK144920.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830003K13 product:forkhead box P1, full insert sequence Length = 1185 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 245 ctgctgttgaagcatgagggcctgctgctgctgg 212
>gb|AF146696.1|AF146696 Homo sapiens clone pAB195 FOXP1 (FOXP1) mRNA, complete cds Length = 2352 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 686 ctgctgttgaagcatgagggcctgctgctgctgg 653
>gb|AF250920.1|AF250920 Homo sapiens 12CC4 mRNA, complete cds Length = 4954 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 854 ctgctgttgaagcatgagggcctgctgctgctgg 821
>dbj|AK077062.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932443N09 product:forkhead box P1, full insert sequence Length = 2405 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 171 ctgctgttgaagcatgagggcctgctgctgctgg 138
>gb|AF339104.1|AF339104 Mus musculus forkhead-related transcription factor 1B (Foxp1b) mRNA, complete cds Length = 1926 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 513 ctgctgttgaagcatgagggcctgctgctgctgg 480
>gb|AF339103.1|AF339103 Mus musculus forkhead-related transcription factor 1A (Foxp1a) mRNA, complete cds Length = 2118 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 513 ctgctgttgaagcatgagggcctgctgctgctgg 480
>dbj|AB221602.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12 days neonate,strain=BALB/c),(tissue_type=testis, dev_stage=adult, strain=C57BL/6J), clone:V01X014A15 Length = 2122 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 514 ctgctgttgaagcatgagggcctgctgctgctgg 481
>dbj|AB221601.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12 days neonate,strain=BALB/c),(tissue_type=testis, dev_stage=adult, strain=C57BL/6J), clone:V01X014A13 Length = 2120 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 513 ctgctgttgaagcatgagggcctgctgctgctgg 480
>ref|NM_001024827.1| Gallus gallus forkhead box P1 (FOXP1), mRNA Length = 2061 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 444 ctgctgttgaagcatgagtgcctgctgctgctgg 411
>gb|BC054505.1| Homo sapiens forkhead box P1, mRNA (cDNA clone IMAGE:5503553), with apparent retained intron Length = 5694 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 3855 ctgctgttgaagcatgagggcctgctgctgctgg 3822
>emb|BX647682.1|HSM807828 Homo sapiens mRNA; cDNA DKFZp686K12112 (from clone DKFZp686K12112) Length = 5552 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 335 ctgctgttgaagcatgagggcctgctgctgctgg 302
>dbj|AK074321.1| Homo sapiens cDNA FLJ23741 fis, clone HEP15377 Length = 2416 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 745 ctgctgttgaagcatgagggcctgctgctgctgg 712
>gb|AY935991.1| Gallus gallus forkhead box P1 (FOXP1) mRNA, complete cds Length = 2061 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 444 ctgctgttgaagcatgagtgcctgctgctgctgg 411
>gb|U42418.1|YLU42418 Yarrowia lipolytica signal recognition particle Srp54p (SRP54) gene, complete cds Length = 2458 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 382 ggccatcatcatctgctgctgaagca 407 |||||||||| ||||||||||||||| Sbjct: 1824 ggccatcatcttctgctgctgaagca 1799
>gb|BC068481.1| Homo sapiens cDNA clone IMAGE:4813876, containing frame-shift errors Length = 2616 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Minus Query: 394 ctgctgctgaagcatgaaagcctgctgctgctgg 427 |||||| |||||||||| ||||||||||||||| Sbjct: 949 ctgctgttgaagcatgagggcctgctgctgctgg 916
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 382 ggccatcatcatctgctgctgaagca 407 |||||||||| ||||||||||||||| Sbjct: 564744 ggccatcatcttctgctgctgaagca 564769
>ref|XM_581793.2| PREDICTED: Bos taurus similar to forkhead box P2 (LOC505502), mRNA Length = 1908 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 395 tgctgctgaagcatgaaagcctgctgctgctgg 427 |||||||| ||||||| ||||||||||||||| Sbjct: 284 tgctgctgcagcatgactgcctgctgctgctgg 252
>ref|XM_575393.1| PREDICTED: Rattus norvegicus similar to forkhead/winged-helix transcription factor 2 (LOC500037), mRNA Length = 2768 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 395 tgctgctgaagcatgaaagcctgctgctgctgg 427 |||||||| ||||| | |||||||||||||||| Sbjct: 856 tgctgctgcagcatcacagcctgctgctgctgg 824
>emb|BX088591.11| Zebrafish DNA sequence from clone CH211-205N20, complete sequence Length = 181336 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 ggcagccaagaaaaaagaaca 172 ||||||||||||||||||||| Sbjct: 140242 ggcagccaagaaaaaagaaca 140262
>gb|AC003666.1|AC003666 Homo sapiens Xp22 BAC GS-551O19 (Genome Systems Human BAC library) and cosmids U199A7 and U209F2 (Lawrence Livermore X chromosome cosmid library) containing part of human chloride channel 4 gene, complete sequence Length = 151750 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 aagaaaaaagaacatgggcag 179 ||||||||||||||||||||| Sbjct: 31843 aagaaaaaagaacatgggcag 31823
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 417 gctgctgctgggccatggcggccatctgc 445 ||||| |||| |||||||||||||||||| Sbjct: 314098 gctgccgctgcgccatggcggccatctgc 314126
>gb|AC145078.2| Mus musculus chromosome 1, clone RP24-439O10, complete sequence Length = 162864 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 catgaaagcctgctgctgct 425 |||||||||||||||||||| Sbjct: 96512 catgaaagcctgctgctgct 96493
>ref|NM_119429.2| Arabidopsis thaliana protein transporter AT4G32760 mRNA, complete cds Length = 2608 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gccatcatcatctgctgctg 402 |||||||||||||||||||| Sbjct: 1952 gccatcatcatctgctgctg 1933
>gb|AC111034.11| Mus musculus chromosome 8, clone RP23-202K1, complete sequence Length = 200303 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 ctgctgctgctgggccatgg 434 |||||||||||||||||||| Sbjct: 86466 ctgctgctgctgggccatgg 86485
>gb|AC158976.14| Mus musculus chromosome 15, clone RP24-71M3, complete sequence Length = 182465 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 384 ccatcatcatctgctgctgaagca 407 |||||||||||| ||||||||||| Sbjct: 110337 ccatcatcatcttctgctgaagca 110360
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ggggccggggcggcaccggg 537 |||||||||||||||||||| Sbjct: 4024076 ggggccggggcggcaccggg 4024057
>ref|XM_612299.2| PREDICTED: Bos taurus similar to CASK-interacting protein CIP98, transcript variant 1 (LOC533033), mRNA Length = 3444 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 ggtgtacgcattgccctggacggc 243 ||||| |||||||||||||||||| Sbjct: 1713 ggtgttcgcattgccctggacggc 1690
>gb|AC146766.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1112E06, complete sequence Length = 177488 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 ctgctggctgttgcatcatc 517 |||||||||||||||||||| Sbjct: 113738 ctgctggctgttgcatcatc 113719
>ref|XM_747932.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g16580) partial mRNA Length = 2907 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gccatcatcatctgctgctg 402 |||||||||||||||||||| Sbjct: 2561 gccatcatcatctgctgctg 2542
>ref|XM_860761.1| PREDICTED: Canis familiaris similar to forkhead box P2, transcript variant 7 (LOC482413), mRNA Length = 2208 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 395 tgctgctgaagcatgaaagcctgctgctgctg 426 |||||||| ||||||| |||||||||||||| Sbjct: 473 tgctgctgcagcatgactgcctgctgctgctg 442
>ref|XM_860734.1| PREDICTED: Canis familiaris similar to forkhead box P2, transcript variant 5 (LOC482413), mRNA Length = 2037 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 395 tgctgctgaagcatgaaagcctgctgctgctg 426 |||||||| ||||||| |||||||||||||| Sbjct: 404 tgctgctgcagcatgactgcctgctgctgctg 373
>ref|XM_539530.2| PREDICTED: Canis familiaris similar to forkhead box P2, transcript variant 1 (LOC482413), mRNA Length = 2133 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 395 tgctgctgaagcatgaaagcctgctgctgctg 426 |||||||| ||||||| |||||||||||||| Sbjct: 398 tgctgctgcagcatgactgcctgctgctgctg 367
>gb|AC069559.27| Mus musculus strain C57BL/6J clone rp23-136j2 map 9, complete sequence Length = 185365 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tactgttgggcctgagggtg 375 |||||||||||||||||||| Sbjct: 71087 tactgttgggcctgagggtg 71106
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 atggcggccatctgcaccgc 450 |||||||||||||||||||| Sbjct: 1944028 atggcggccatctgcaccgc 1944047
>gb|BT000033.1| Arabidopsis thaliana putative protein (At4g32760) mRNA, complete cds Length = 2205 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gccatcatcatctgctgctg 402 |||||||||||||||||||| Sbjct: 1715 gccatcatcatctgctgctg 1696
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ggggccggggcggcaccggg 537 |||||||||||||||||||| Sbjct: 214760 ggggccggggcggcaccggg 214741
>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 13/14 Length = 316050 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 ggggccggggcggcaccggg 537 |||||||||||||||||||| Sbjct: 224151 ggggccggggcggcaccggg 224132
>emb|AL161582.2|ATCHRIV78 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78 Length = 198669 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gccatcatcatctgctgctg 402 |||||||||||||||||||| Sbjct: 25277 gccatcatcatctgctgctg 25258
>emb|AL022537.1|ATF4D11 Arabidopsis thaliana DNA chromosome 4, BAC clone F4D11 (ESSAII project) Length = 101715 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gccatcatcatctgctgctg 402 |||||||||||||||||||| Sbjct: 13542 gccatcatcatctgctgctg 13561
>gb|AY120724.1| Arabidopsis thaliana putative protein (At4g32760) mRNA, complete cds Length = 2566 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gccatcatcatctgctgctg 402 |||||||||||||||||||| Sbjct: 1954 gccatcatcatctgctgctg 1935
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 413 gcctgctgctgctgggccatggcggccatctg 444 |||||||||||| ||||||| |||||||||| Sbjct: 2857621 gcctgctgctgcccggccatgacggccatctg 2857590
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 gccggggcggcaccgggtgg 540 |||||||||||||||||||| Sbjct: 4597458 gccggggcggcaccgggtgg 4597439
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 ctgctggctgttgcatcatc 517 |||||||||||||||||||| Sbjct: 23523052 ctgctggctgttgcatcatc 23523033
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 419 tgctgctgggccatggcggccatc 442 |||||||||||||||||| ||||| Sbjct: 283164 tgctgctgggccatggcgcccatc 283187
>emb|BX826493.1|CNS0A4M4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB30ZF08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2151 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gccatcatcatctgctgctg 402 |||||||||||||||||||| Sbjct: 1620 gccatcatcatctgctgctg 1601
>gb|AC153817.6| Mus musculus BAC RP23-11P24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 247508 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 gctgctgctgggccatggcg 436 |||||||||||||||||||| Sbjct: 70140 gctgctgctgggccatggcg 70159
>gb|AC093520.4| Homo sapiens chromosome 16 clone RP11-120K18, complete sequence Length = 168064 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 catatacaaaatacacaagc 43 |||||||||||||||||||| Sbjct: 91179 catatacaaaatacacaagc 91198
>dbj|BS000102.1| Pan troglodytes chromosome 22 clone:RP43-107D21, map 22, complete sequences Length = 65478 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aatggcagccaagaaaaaag 168 |||||||||||||||||||| Sbjct: 51670 aatggcagccaagaaaaaag 51689
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 ttgccctggacggcgtggag 249 |||||||||||||||||||| Sbjct: 5848580 ttgccctggacggcgtggag 5848599
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 ctgctggctgttgcatcatc 517 |||||||||||||||||||| Sbjct: 23832988 ctgctggctgttgcatcatc 23832969
>emb|AJ318043.1|MMU318043 Mus musculus ADIR gene promoter region Length = 820 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 catgaaagcctgctgctgct 425 |||||||||||||||||||| Sbjct: 285 catgaaagcctgctgctgct 304
>emb|AL645563.12| Mouse DNA sequence from clone RP23-132L14 on chromosome 4, complete sequence Length = 214456 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 aaaaaagaacatgggcagaacaaa 185 ||||||||| |||||||||||||| Sbjct: 128185 aaaaaagaaaatgggcagaacaaa 128162 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,376,886 Number of Sequences: 3902068 Number of extensions: 5376886 Number of successful extensions: 109047 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108227 Number of HSP's gapped (non-prelim): 812 length of query: 620 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 597 effective length of database: 17,143,297,704 effective search space: 10234548729288 effective search space used: 10234548729288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)