ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32j08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009488.1| Triticum aestivum clone wr1.pk0058.g3:fis, full i... 809 0.0
2dbj|AK120521.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
3gb|AF213455.1|AF213455 Zea mays protein phosphatase type-2C (pp2... 149 1e-32
4gb|AY106158.1| Zea mays PCO109280 mRNA sequence 149 1e-32
5dbj|AK112023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 5e-32
6dbj|AK120711.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 3e-30
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
8dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
9gb|AY104016.1| Zea mays PCO109282 mRNA sequence 133 8e-28
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
11dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
12gb|AC143339.12| Medicago truncatula clone mth2-20g20, complete s... 72 2e-09
13gb|AF378538.1| Unidentified bacterium clone FR48B7 environmental... 44 0.56
14gb|AC132616.2| Mus musculus BAC clone RP23-317F10 from chromosom... 44 0.56
15emb|BX255911.8| Zebrafish DNA sequence from clone DKEY-274C14 in... 44 0.56
16ref|XM_323955.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.2
17ref|XM_953750.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.2
18emb|AL583835.6| Human DNA sequence from clone RP11-244K5 on chro... 42 2.2
19emb|AL355497.14| Human DNA sequence from clone RP11-472G23 on ch... 42 2.2
20emb|AL135784.4| Human DNA sequence from clone RP4-687J17 on chro... 42 2.2
21emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cos... 42 2.2
22emb|CR406619.1| Gallus gallus finished cDNA, clone ChEST770a18 42 2.2
23gb|AC104257.12| Homo sapiens chromosome 8, clone CTD-2501M5, com... 42 2.2
24gb|AC160539.11| Mus musculus chromosome 15, clone RP24-163H9, co... 42 2.2
25ref|XM_466871.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.8
26ref|NM_001016288.2| Xenopus tropicalis hypothetical protein LOC5... 40 8.8
27gb|AY600302.1| Homo sapiens origin recognition complex, subunit ... 40 8.8
28ref|XM_747202.1| Aspergillus fumigatus Af293 protein phosphatase... 40 8.8
29gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome... 40 8.8
30gb|AC124757.4| Mus musculus BAC clone RP23-116P5 from 8, complet... 40 8.8
31gb|AC102792.7| Mus musculus chromosome 7, clone RP23-370I17, com... 40 8.8
32gb|AC159140.10| Mus musculus chromosome 7, clone RP24-84I4, comp... 40 8.8
33emb|AL596211.5| Human DNA sequence from clone RP11-201A3 on chro... 40 8.8
34emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chr... 40 8.8
35emb|BX842641.1| Neurospora crassa DNA linkage group I BAC contig... 40 8.8
36emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4 40 8.8
37gb|AC021660.16| Homo sapiens 3 BAC RP11-227H4 (Roswell Park Canc... 40 8.8
38gb|AC113386.2| Homo sapiens chromosome 5 clone RP11-350H19, comp... 40 8.8
39gb|AC010928.7|AC010928 Homo sapiens chromosome 18, clone RP11-32... 40 8.8
40gb|AC019226.5| Homo sapiens BAC clone RP11-567F11 from 2, comple... 40 8.8
41gb|AC084414.2|AC084414 Arabidopsis thaliana chromosome 1 BAC F27... 40 8.8
42dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
43dbj|AK068495.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
44emb|CR761577.2| Xenopus tropicalis finished cDNA, clone TGas073n08 40 8.8
45gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 8.8
46gb|AC002365.1|AC002365 Homo sapiens chromosome X clone U177G4, U... 40 8.8 
>gb|BT009488.1| Triticum aestivum clone wr1.pk0058.g3:fis, full insert mRNA sequence
          Length = 1768

 Score =  809 bits (408), Expect = 0.0
 Identities = 534/575 (92%), Gaps = 7/575 (1%)
 Strand = Plus / Minus

                                                                        
Query: 2    cagccgctgaggcatggaatataccaccaaaaaacaaaggaacaccccagccacgtttac 61
            ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1042 cagccgcagaggcatggaatatacaaccaaaaaacaaaggaacaccccagccacgtttac 983

                                                                        
Query: 62   agcacacacaaaaactacaacataacaaaacatcccaaattatgaatttgggaggcgtgg 121
            |||| ||||| |||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 982  agcatacacacaaactatagcataacaaaacattccaaattatgaatttgggaggcgtgg 923

                                                                        
Query: 122  atgatccaaacaatggcttgtacaaggacgaacagagcggctcacagaagctgcgtgcca 181
            ||||||| ||  |||| |||||||| |||||||||||||||||||||||| ||  |||||
Sbjct: 922  atgatccgaaacatggattgtacaatgacgaacagagcggctcacagaagttgattgcca 863

                                                                        
Query: 182  ggaattcgctgttgcgccaaacaatgtgatttaacctgggttcgcaggcagaatgcaagc 241
            ||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 862  ggatttcgatgttgcgccaaacaatgtgatttatcctgggttcgcaggcagaatgcacgc 803

                                                                        
Query: 242  caaccacagcaattggctgatatacagtcgatacccccgccacagagtgcacacaatttc 301
            ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 802  caaccacagcaattgactgatatacagtcgataccccagccacagagtgcacacaatttc 743

                                                                        
Query: 302  acattgacaactttgcatcctcgccagtgtcaagaaccgtagacctcagcaccagtggtc 361
            |||||| |||||||||||||| ||| ||||||||| ||||||||||||||||||||    
Sbjct: 742  acattggcaactttgcatcctagcccgtgtcaagagccgtagacctcagcaccagt---- 687

                                                                        
Query: 362  gcggagccttccaattaacgc-ttacactcactgaacctcaagactcttccttgcctttc 420
              ||||||||   |||||||| | | ||||| ||||||||||||||||||||||||||||
Sbjct: 686  --ggagcctttgcattaacgcgtaatactcagtgaacctcaagactcttccttgcctttc 629

                                                                        
Query: 421  gcagattgctcccccgcgtcagcatttttcttgtcactgactggttttttgaactgcacc 480
            ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 628  gcagattgctcccccacgtcagcctttttcttgtcactgactggttttttgaactgcacc 569

                                                                        
Query: 481  aagatcatggtcatgttgtcgcatccgtctccgcccattgttgatggagccaggcatctg 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568  aagatcatggtcatgttgtcgcatccgtctccgcccattgttgatggagccaggcatctg 509

                                               
Query: 541  tcgagcactctttcacacactgcagaaagggtgct 575
            |||||||||||||||||||||||||||||| ||||
Sbjct: 508  tcgagcactctttcacacactgcagaaaggctgct 474



 Score =  103 bits (52), Expect = 7e-19
 Identities = 61/64 (95%)
 Strand = Plus / Minus

                                                                       
Query: 579 ccgtgtgtatatgctcgtggatgaaatccaccaactgttggcttgacatacagtcccaaa 638
           |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 303 ccgtgtttatatgctcatggatgaaatccaccaactgctggcttgacatacagtcccaaa 244

               
Query: 639 tgcc 642
           ||||
Sbjct: 243 tgcc 240
to top
>dbj|AK120521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124L22, full
            insert sequence
          Length = 2052

 Score =  210 bits (106), Expect = 4e-51
 Identities = 161/178 (90%), Gaps = 1/178 (0%)
 Strand = Plus / Minus

                                                                        
Query: 465  ttttttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgttga 524
            |||||||||||||||||  | ||||||||||||||| ||||| ||||| || ||||||||
Sbjct: 1331 ttttttgaactgcaccagaaccatggtcatgttgtcacatccctctccaccaattgttga 1272

                                                                        
Query: 525  tggagccaggcatctgtcgagcactctttcacacactgcagaaagggtgctttcccgtgt 584
            |||||| ||||||||||||||||||||||| ||||||||||||||  |||| | || | |
Sbjct: 1271 tggagctaggcatctgtcgagcactctttcgcacactgcagaaagactgctct-ccttct 1213

                                                                      
Query: 585  gtatatgctcgtggatgaaatccaccaactgttggcttgacatacagtcccaaatgcc 642
            ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 1212 gtatatgctcgtggatgaaatccaccagctgttggcttgacatgcagtcccaaatgcc 1155
to top
>gb|AF213455.1|AF213455 Zea mays protein phosphatase type-2C (pp2c-1) mRNA, complete cds
          Length = 1107

 Score =  149 bits (75), Expect = 1e-32
 Identities = 152/176 (86%), Gaps = 5/176 (2%)
 Strand = Plus / Minus

                                                                       
Query: 469 ttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgttgatgga 528
           |||||||||||||||||||| |||||||| |||||||| || || ||||| || ||||||
Sbjct: 989 ttgaactgcaccaagatcatcgtcatgttatcgcatccctcgccacccatggtcgatgga 930

                                                                       
Query: 529 gccaggcatctgtcgagcactctttcacacactgcagaaagggtgctttc--ccgtgtgt 586
           ||||||||||| || ||||||| |||||| |||||||||||   ||||||  | |||| |
Sbjct: 929 gccaggcatctatcaagcactccttcacatactgcagaaag---gctttcctctgtgttt 873

                                                                   
Query: 587 atatgctcgtggatgaaatccaccaactgttggcttgacatacagtcccaaatgcc 642
           ||||| ||  |||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 872 atatgttcacggatgaaatcaaccaactgctggcttgacatgcagtcccaaatgcc 817
to top
>gb|AY106158.1| Zea mays PCO109280 mRNA sequence
          Length = 813

 Score =  149 bits (75), Expect = 1e-32
 Identities = 152/176 (86%), Gaps = 5/176 (2%)
 Strand = Plus / Minus

                                                                       
Query: 469 ttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgttgatgga 528
           ||||||||||||| |||||| |||||||| |||||||| || || ||||| || ||||||
Sbjct: 380 ttgaactgcaccaggatcatcgtcatgttatcgcatccctcgccacccatggtcgatgga 321

                                                                       
Query: 529 gccaggcatctgtcgagcactctttcacacactgcagaaagggtgctttc--ccgtgtgt 586
           ||||||||||| || |||||||||||||| |||||||||||   ||||||  | |||| |
Sbjct: 320 gccaggcatctatcaagcactctttcacatactgcagaaag---gctttcctctgtgttt 264

                                                                   
Query: 587 atatgctcgtggatgaaatccaccaactgttggcttgacatacagtcccaaatgcc 642
           ||||| ||  |||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 263 atatgttcacggatgaaatcaaccaactgctggcttgacatgcagtcccaaatgcc 208
to top
>dbj|AK112023.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-H05, full
            insert sequence
          Length = 1693

 Score =  147 bits (74), Expect = 5e-32
 Identities = 150/174 (86%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                        
Query: 469  ttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgttgatgga 528
            ||||||||||| | |||||| ||||||||||||||||| ||||| ||||  |||||||||
Sbjct: 1278 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 1219

                                                                        
Query: 529  gccaggcatctgtcgagcactctttcacacactgcagaaagggtgctttcccgtgtgtat 588
            ||||||||||| || ||||||||||| || || ||||||||| |||| | | |||| |||
Sbjct: 1218 gccaggcatctatctagcactctttcgcataccgcagaaaggctgctct-ctgtgtttat 1160

                                                                  
Query: 589  atgctcgtggatgaaatccaccaactgttggcttgacatacagtcccaaatgcc 642
             || |||||||||||||| |||| ||||||||| ||||| |||||||| |||||
Sbjct: 1159 gtgttcgtggatgaaatcaaccagctgttggctagacatgcagtcccagatgcc 1106
to top
>dbj|AK120711.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001L10, full
            insert sequence
          Length = 1818

 Score =  141 bits (71), Expect = 3e-30
 Identities = 144/167 (86%), Gaps = 1/167 (0%)
 Strand = Plus / Minus

                                                                        
Query: 469  ttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgttgatgga 528
            ||||||||||| | |||||| ||||||||||||||||| ||||| ||||  |||||||||
Sbjct: 1400 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 1341

                                                                        
Query: 529  gccaggcatctgtcgagcactctttcacacactgcagaaagggtgctttcccgtgtgtat 588
            ||||||||||| || ||||||||||| || || ||||||||| |||| | | |||| |||
Sbjct: 1340 gccaggcatctatctagcactctttcgcataccgcagaaaggctgctct-ctgtgtttat 1282

                                                           
Query: 589  atgctcgtggatgaaatccaccaactgttggcttgacatacagtccc 635
             || |||||||||||||| |||| ||||||||| ||||| |||||||
Sbjct: 1281 gtgttcgtggatgaaatcaaccagctgttggctagacatgcagtccc 1235
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  135 bits (68), Expect = 2e-28
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                           
Query: 466     tttttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgttgat 525
               ||||||||||||||||  | ||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 4453945 tttttgaactgcaccagaaccatggtcatgttgtcacatccctctccaccaattgttgat 4453886

                                                           
Query: 526     ggagccaggcatctgtcgagcactctttcacacactgcagaaag 569
               ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 4453885 ggagctaggcatctgtcgagcactctttcgcacactgcagaaag 4453842



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                   
Query: 584     tgtatatgctcgtggatgaaatccaccaactgttggcttgacatacagtccc 635
               |||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 4453723 tgtatatgctcgtggatgaaatccaccagctgttggcttgacatgcagtccc 4453672



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 237      caagccaaccacagcaattggctg 260
                |||||||| |||||||||||||||
Sbjct: 25197754 caagccaagcacagcaattggctg 25197777
to top
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0544B02
          Length = 156339

 Score =  135 bits (68), Expect = 2e-28
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                          
Query: 466    tttttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgttgat 525
              ||||||||||||||||  | ||||||||||||||| ||||| ||||| || |||||||||
Sbjct: 137509 tttttgaactgcaccagaaccatggtcatgttgtcacatccctctccaccaattgttgat 137450

                                                          
Query: 526    ggagccaggcatctgtcgagcactctttcacacactgcagaaag 569
              ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 137449 ggagctaggcatctgtcgagcactctttcgcacactgcagaaag 137406



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                  
Query: 584    tgtatatgctcgtggatgaaatccaccaactgttggcttgacatacagtccc 635
              |||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 137287 tgtatatgctcgtggatgaaatccaccagctgttggcttgacatgcagtccc 137236
to top
>gb|AY104016.1| Zea mays PCO109282 mRNA sequence
          Length = 1486

 Score =  133 bits (67), Expect = 8e-28
 Identities = 150/176 (85%), Gaps = 5/176 (2%)
 Strand = Plus / Minus

                                                                        
Query: 469  ttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgttgatgga 528
            ||||||||||||| |||||| |||||||| |||||||| || |||||||| || || |||
Sbjct: 1146 ttgaactgcaccaggatcatcgtcatgttatcgcatccctcgccgcccatggtcgacgga 1087

                                                                        
Query: 529  gccaggcatctgtcgagcactctttcacacactgcagaaagggtgctttc--ccgtgtgt 586
            ||||||||||| ||||||||||| || || ||||| || ||   ||||||  | |||| |
Sbjct: 1086 gccaggcatctatcgagcactctctcgcatactgccgagag---gctttcctctgtgtct 1030

                                                                    
Query: 587  atatgctcgtggatgaaatccaccaactgttggcttgacatacagtcccaaatgcc 642
            ||||||||| |||||||||| |||||||| ||||||||||| |||||||| |||||
Sbjct: 1029 atatgctcgcggatgaaatcgaccaactgctggcttgacatgcagtcccagatgcc 974
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                            
Query: 469      ttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgttgatgga 528
                ||||||||||| | |||||| ||||||||||||||||| ||||| ||||  |||||||||
Sbjct: 26282034 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 26282093

                                                               
Query: 529      gccaggcatctgtcgagcactctttcacacactgcagaaagggtgct 575
                ||||||||||| || ||||||||||| || || ||||||||| ||||
Sbjct: 26282094 gccaggcatctatctagcactctttcgcataccgcagaaaggctgct 26282140



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 593      tcgtggatgaaatccaccaactgttggcttgacatacagtccc 635
                |||||||||||||| |||| ||||||||| ||||| |||||||
Sbjct: 26282245 tcgtggatgaaatcaaccagctgttggctagacatgcagtccc 26282287
to top
>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0453H04
          Length = 175047

 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                          
Query: 469    ttgaactgcaccaagatcatggtcatgttgtcgcatccgtctccgcccattgttgatgga 528
              ||||||||||| | |||||| ||||||||||||||||| ||||| ||||  |||||||||
Sbjct: 146574 ttgaactgcactaggatcattgtcatgttgtcgcatccttctccacccaaagttgatgga 146633

                                                             
Query: 529    gccaggcatctgtcgagcactctttcacacactgcagaaagggtgct 575
              ||||||||||| || ||||||||||| || || ||||||||| ||||
Sbjct: 146634 gccaggcatctatctagcactctttcgcataccgcagaaaggctgct 146680



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 593    tcgtggatgaaatccaccaactgttggcttgacatacagtccc 635
              |||||||||||||| |||| ||||||||| ||||| |||||||
Sbjct: 146785 tcgtggatgaaatcaaccagctgttggctagacatgcagtccc 146827
to top
>gb|AC143339.12| Medicago truncatula clone mth2-20g20, complete sequence
          Length = 99993

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                         
Query: 463   ggttttttgaactgcaccaagatcatggtcatgttgtcgcatcc 506
             |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 67094 ggttttttgaactgcaccaagatcattgtcatgttatcgcatcc 67137
to top
>gb|AF378538.1| Unidentified bacterium clone FR48B7 environmental gene cassette
           EGC107, partial sequence
          Length = 1366

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 381 gcttacactcactgaacctcaa 402
           ||||||||||||||||||||||
Sbjct: 927 gcttacactcactgaacctcaa 948
to top
>gb|AC132616.2| Mus musculus BAC clone RP23-317F10 from chromosome 14, complete
             sequence
          Length = 213684

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 64    cacacacaaaaactacaacataacaaaaca 93
             |||||||||||| ||||||| |||||||||
Sbjct: 28176 cacacacaaaaaatacaacaaaacaaaaca 28205
to top
>emb|BX255911.8| Zebrafish DNA sequence from clone DKEY-274C14 in linkage group 20,
              complete sequence
          Length = 206480

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 464    gttttttgaactgcaccaagat 485
              ||||||||||||||||||||||
Sbjct: 128995 gttttttgaactgcaccaagat 129016
to top
>ref|XM_323955.1| Neurospora crassa OR74A hypothetical protein (NCU04600.1) partial
           mRNA
          Length = 1320

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 483 gatcatggtcatgttgtcgca 503
           |||||||||||||||||||||
Sbjct: 873 gatcatggtcatgttgtcgca 853
to top
>ref|XM_953750.1| Neurospora crassa OR74A hypothetical protein (NCU04600.1) partial
           mRNA
          Length = 1320

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 483 gatcatggtcatgttgtcgca 503
           |||||||||||||||||||||
Sbjct: 873 gatcatggtcatgttgtcgca 853
to top
>emb|AL583835.6| Human DNA sequence from clone RP11-244K5 on chromosome 6 Contains three
             pseudogenes similar to 43kD small nuclear RNA activating
             complex polypeptide 1 (SNAPC1) (SNAP43 PTFGAMMA PTFgamma),
             a novel protein similar to UL16 binding protein 2 (ULBP2),
             the 3' end of a novel gene, a novel gene, the ULBP2 gene
             for UL16 binding protein 2 (RAET1H ALCAN-alpha) and three
             CpG islands, complete sequence
          Length = 46941

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 58    ttacagcacacacaaaaacta 78
             |||||||||||||||||||||
Sbjct: 45953 ttacagcacacacaaaaacta 45973



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 58    ttacagcacacacaaaaacta 78
             |||||||||||||||||||||
Sbjct: 30012 ttacagcacacacaaaaacta 30032



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 58   ttacagcacacacaaaaacta 78
            |||||||||||||||||||||
Sbjct: 4411 ttacagcacacacaaaaacta 4391
to top
>emb|AL355497.14| Human DNA sequence from clone RP11-472G23 on chromosome 6 Contains the
             ULBP1 gene for UL16 binding protein 1, a basic
             transcription factor 3 (BTF3) pseudogene, a pseudogene
             similar to UL16 binding protein 1 (ULBP1), two retinoic
             acid early transcript 1 (RAET1L) pseudogenes, the gene for
             retinoic acid early transcript 1 (RAET1L), a prohibitin
             (PHB) pseudogene, the ULBP3 gene for UL16 binding protein
             3, the 5' end of the PPP1R14C gene for PPP1R14C gene for
             protein phosphatase 1 regulatory (inhibitor) subunit 14C
             (KEPI NY-BR-81 CPI17-like), a novel gene and eight CpG
             islands, complete sequence
          Length = 215397

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 58    ttacagcacacacaaaaacta 78
             |||||||||||||||||||||
Sbjct: 85674 ttacagcacacacaaaaacta 85654
to top
>emb|AL135784.4| Human DNA sequence from clone RP4-687J17 on chromosome Xq26.1-26.3
             Contains the 5' end of the IGSF1 gene for immunoglobulin
             superfamily member 1 and an olfactory receptor family
             pseudogene, complete sequence
          Length = 92697

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 301   cacattgacaactttgcatcc 321
             |||||||||||||||||||||
Sbjct: 85150 cacattgacaactttgcatcc 85130
to top
>emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10
          Length = 161126

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 483    gatcatggtcatgttgtcgca 503
              |||||||||||||||||||||
Sbjct: 128924 gatcatggtcatgttgtcgca 128944
to top
>emb|CR406619.1| Gallus gallus finished cDNA, clone ChEST770a18
          Length = 1190

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 69  acaaaaactacaacataacaaaacatccc 97
           ||||||||| ||||| |||||||||||||
Sbjct: 228 acaaaaactccaacaaaacaaaacatccc 200
to top
>gb|AC104257.12| Homo sapiens chromosome 8, clone CTD-2501M5, complete sequence
          Length = 167787

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 45    accccagccacgtttacagcacaca 69
             ||||||||||||| |||||||||||
Sbjct: 97416 accccagccacgtctacagcacaca 97440
to top
>gb|AC160539.11| Mus musculus chromosome 15, clone RP24-163H9, complete sequence
          Length = 151529

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 73    aaactacaacataacaaaaca 93
             |||||||||||||||||||||
Sbjct: 88122 aaactacaacataacaaaaca 88102
to top
>ref|XM_466871.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3530

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 237 caagccaaccacagcaattggctg 260
           |||||||| |||||||||||||||
Sbjct: 443 caagccaagcacagcaattggctg 420
to top
>ref|NM_001016288.2| Xenopus tropicalis hypothetical protein LOC549042 (LOC549042), mRNA
          Length = 1909

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   ataccaccaaaaaacaaagg 41
            ||||||||||||||||||||
Sbjct: 1784 ataccaccaaaaaacaaagg 1765
to top
>gb|AY600302.1| Homo sapiens origin recognition complex, subunit 4-like (yeast) (ORC4L)
             gene, complete cds
          Length = 90562

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    aaaaactacaacataacaaa 90
             ||||||||||||||||||||
Sbjct: 49828 aaaaactacaacataacaaa 49847
to top
>ref|XM_747202.1| Aspergillus fumigatus Af293 protein phosphatase 2C (Afu1g09280)
           partial mRNA
          Length = 1290

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 483 gatcatggtcatgttgtcgcatcc 506
           |||||||||||||||||| |||||
Sbjct: 861 gatcatggtcatgttgtcacatcc 838
to top
>gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome 12, complete sequence
          Length = 192581

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     atataccaccaaaaaacaaa 39
              ||||||||||||||||||||
Sbjct: 109564 atataccaccaaaaaacaaa 109545
to top
>gb|AC124757.4| Mus musculus BAC clone RP23-116P5 from 8, complete sequence
          Length = 210427

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 56     gtttacagcacacacaaaaactacaaca 83
              |||| ||||||||| |||||||||||||
Sbjct: 157968 gttttcagcacacagaaaaactacaaca 157941
to top
>gb|AC102792.7| Mus musculus chromosome 7, clone RP23-370I17, complete sequence
          Length = 215999

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    aaaaactacaacataacaaa 90
             ||||||||||||||||||||
Sbjct: 49640 aaaaactacaacataacaaa 49659
to top
>gb|AC159140.10| Mus musculus chromosome 7, clone RP24-84I4, complete sequence
          Length = 202318

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 554   cacacactgcagaaagggtg 573
             ||||||||||||||||||||
Sbjct: 78315 cacacactgcagaaagggtg 78334
to top
>emb|AL596211.5| Human DNA sequence from clone RP11-201A3 on chromosome 1, complete
             sequence
          Length = 54940

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   gagtgcacacaatttcacat 305
             ||||||||||||||||||||
Sbjct: 31330 gagtgcacacaatttcacat 31311
to top
>emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chromosome 13, complete
             sequence
          Length = 149684

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    agcacacacaaaaactacaa 81
             ||||||||||||||||||||
Sbjct: 66903 agcacacacaaaaactacaa 66884
to top
>emb|BX842641.1| Neurospora crassa DNA linkage group I BAC contig B22I21
          Length = 124321

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   cacaatttcacattgacaac 312
             ||||||||||||||||||||
Sbjct: 95808 cacaatttcacattgacaac 95827
to top
>emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4
          Length = 272698

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 23     taccaccaaaaaacaaaggaacac 46
              ||||||||| ||||||||||||||
Sbjct: 125485 taccaccaataaacaaaggaacac 125462
to top
>gb|AC021660.16| Homo sapiens 3 BAC RP11-227H4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164567

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   gccaggaattcgctgttgcg 197
             ||||||||||||||||||||
Sbjct: 91074 gccaggaattcgctgttgcg 91093
to top
>gb|AC113386.2| Homo sapiens chromosome 5 clone RP11-350H19, complete sequence
          Length = 109953

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 446   ttttcttgtcactgactggttttt 469
             |||||||||||||||| |||||||
Sbjct: 64718 ttttcttgtcactgacaggttttt 64741
to top
>gb|AC010928.7|AC010928 Homo sapiens chromosome 18, clone RP11-325K19, complete sequence
          Length = 213552

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 69    acaaaaactacaacataacaaaac 92
             |||||||||| |||||||||||||
Sbjct: 74945 acaaaaactaaaacataacaaaac 74922
to top
>gb|AC019226.5| Homo sapiens BAC clone RP11-567F11 from 2, complete sequence
          Length = 132444

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     aaaaactacaacataacaaa 90
              ||||||||||||||||||||
Sbjct: 114441 aaaaactacaacataacaaa 114460
to top
>gb|AC084414.2|AC084414 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete
             sequence
          Length = 54313

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    aactacaacataacaaaaca 93
             ||||||||||||||||||||
Sbjct: 19890 aactacaacataacaaaaca 19909
to top
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1469H02
          Length = 136602

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 237   caagccaaccacagcaattggctg 260
             |||||||| |||||||||||||||
Sbjct: 98147 caagccaagcacagcaattggctg 98170
to top
>dbj|AK068495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157D09, full
           insert sequence
          Length = 3530

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 237 caagccaaccacagcaattggctg 260
           |||||||| |||||||||||||||
Sbjct: 443 caagccaagcacagcaattggctg 420
to top
>emb|CR761577.2| Xenopus tropicalis finished cDNA, clone TGas073n08
          Length = 1909

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   ataccaccaaaaaacaaagg 41
            ||||||||||||||||||||
Sbjct: 1784 ataccaccaaaaaacaaagg 1765
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 180     caggaattcgctgttgcgcc 199
               ||||||||||||||||||||
Sbjct: 3959821 caggaattcgctgttgcgcc 3959840
to top
>gb|AC002365.1|AC002365 Homo sapiens chromosome X clone U177G4, U152H5, U168D5, 174A6, U172D6,
              and U186B3 from Xp22, complete sequence
          Length = 196542

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 445    tttttcttgtcactgactgg 464
              ||||||||||||||||||||
Sbjct: 148104 tttttcttgtcactgactgg 148085


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,018,236
Number of Sequences: 3902068
Number of extensions: 6018236
Number of successful extensions: 105381
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105188
Number of HSP's gapped (non-prelim): 190
length of query: 643
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 620
effective length of database: 17,143,297,704
effective search space: 10628844576480
effective search space used: 10628844576480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top