ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags32j07 |
|---|---|
| Clone Library Name | barley_pub |
>NDUA2_BOVIN (Q02370) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 2 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase B8 subunit) (Complex I-B8) (CI-B8) Length = 98 Score = 82.4 bits (202), Expect = 5e-16 Identities = 37/79 (46%), Positives = 53/79 (67%) Frame = -2 Query: 388 VKEIRFLFCQSSPASGPAREFVKKNYGDIKTRNPTLPVLIRECSGVEPQLWARYDMGVER 209 ++EIR CQ SP S R+F++K Y ++K NP LP+LIRECS V+P+LWARY G E+ Sbjct: 15 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEK 74 Query: 208 CVRLDGLTEAQIDKKLEEL 152 V L+ + Q+ + LE + Sbjct: 75 NVSLNNFSADQVTRALENV 93
>NDUA2_MACFA (Q4R5E2) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 2 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase B8 subunit) (Complex I-B8) (CI-B8) Length = 98 Score = 82.0 bits (201), Expect = 6e-16 Identities = 37/79 (46%), Positives = 53/79 (67%) Frame = -2 Query: 388 VKEIRFLFCQSSPASGPAREFVKKNYGDIKTRNPTLPVLIRECSGVEPQLWARYDMGVER 209 ++EIR CQ SP S R+F++K Y ++K NP LP+LIRECS V+P+LWARY G E+ Sbjct: 15 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEK 74 Query: 208 CVRLDGLTEAQIDKKLEEL 152 V L+ + Q+ + LE + Sbjct: 75 NVPLNNFSADQVTRALENV 93
>NDUA2_NEUCR (Q07842) NADH-ubiquinone oxidoreductase 10.5 kDa subunit (EC| 1.6.5.3) (EC 1.6.99.3) (Complex I) (CI) Length = 94 Score = 81.6 bits (200), Expect = 8e-16 Identities = 36/91 (39%), Positives = 60/91 (65%) Frame = -2 Query: 418 MAWRASLSRNVKEIRFLFCQSSPASGPAREFVKKNYGDIKTRNPTLPVLIRECSGVEPQL 239 M+ R + ++ +KE+RFLFCQ+ S R F+ +NY +K NP P+LIR+ SG P++ Sbjct: 1 MSGRFAFNKGLKEVRFLFCQTGEHSAATRSFLLRNYPAMKKDNPATPILIRDASGTLPKV 60 Query: 238 WARYDMGVERCVRLDGLTEAQIDKKLEELAK 146 +AR++ G E+ L+GL++ QI++ + L K Sbjct: 61 YARFEFGKEKSQSLEGLSDQQIEETVSSLVK 91
>NDUA2_HUMAN (O43678) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 2 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase B8 subunit) (Complex I-B8) (CI-B8) Length = 98 Score = 80.9 bits (198), Expect = 1e-15 Identities = 37/79 (46%), Positives = 52/79 (65%) Frame = -2 Query: 388 VKEIRFLFCQSSPASGPAREFVKKNYGDIKTRNPTLPVLIRECSGVEPQLWARYDMGVER 209 ++EIR CQ SP S R+F++K Y ++K NP LP+LIRECS V+P+LWARY G E Sbjct: 15 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 74 Query: 208 CVRLDGLTEAQIDKKLEEL 152 V L+ + Q+ + LE + Sbjct: 75 NVPLNNFSADQVTRALENV 93
>NDUA2_MOUSE (Q9CQ75) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 2 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase B8 subunit) (Complex I-B8) (CI-B8) Length = 98 Score = 77.4 bits (189), Expect = 1e-14 Identities = 38/92 (41%), Positives = 60/92 (65%), Gaps = 1/92 (1%) Frame = -2 Query: 424 AAMAWRASLSR-NVKEIRFLFCQSSPASGPAREFVKKNYGDIKTRNPTLPVLIRECSGVE 248 AA A RA ++ ++EIR CQ SP S R+F+ + Y ++K +P LP+LIRECS V+ Sbjct: 2 AAAASRAVGAKLGLREIRVHLCQRSPGSQGVRDFIVQRYVELKKAHPNLPILIRECSEVQ 61 Query: 247 PQLWARYDMGVERCVRLDGLTEAQIDKKLEEL 152 P+LWARY G E+ V L+ L+ ++ + ++ + Sbjct: 62 PKLWARYAFGQEKTVSLNNLSADEVTRAMQNV 93
>RM43_MOUSE (Q99N89) 39S ribosomal protein L43, mitochondrial precursor (L43mt)| (MRP-L43) (Mitochondrial ribosomal protein bMRP36a) Length = 183 Score = 35.4 bits (80), Expect = 0.063 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Frame = -2 Query: 400 LSRNVKEIRFL---FCQSSPASGPAREFVKKNYGDIKTRNPTLPVLIRECSGVEPQLWAR 230 L R V++++ L + +P+S AREFV++ D RNP + V + P++ A Sbjct: 19 LGRYVQQLQRLSLSLSRDAPSSRGAREFVEREVTDFARRNPGVVVYVNPRPCAMPRIVAE 78 Query: 229 YDMGVERCVRLDGLTEAQIDKKLEELA 149 Y G R ++ + +I +++LA Sbjct: 79 YLNGAVREENVNSKSVEEIKSLVQKLA 105
>RM43_BOVIN (Q95KE5) 39S ribosomal protein L43, mitochondrial precursor (L43mt)| (MRP-L43) Length = 159 Score = 35.4 bits (80), Expect = 0.063 Identities = 24/83 (28%), Positives = 42/83 (50%) Frame = -2 Query: 394 RNVKEIRFLFCQSSPASGPAREFVKKNYGDIKTRNPTLPVLIRECSGVEPQLWARYDMGV 215 + ++ + F + +P+S AREFV++ D RNP + + + P++ A Y G Sbjct: 24 QQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPGVVIYVNPRPCCVPRVVAEYLNG- 82 Query: 214 ERCVRLDGLTEAQIDKKLEELAK 146 VR + LT K +EE+A+ Sbjct: 83 --AVREESLT----CKSVEEIAR 99
>NGFV2_HOPST (Q3HXX9) Venom nerve growth factor 2 precursor (vNGF-2)| Length = 245 Score = 31.2 bits (69), Expect = 1.2 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -2 Query: 331 EFVKKNYGDIKTRNPTLPVLIRECSGVEPQLWARY 227 E K+ + + K RNP +L EC G++ +LW Y Sbjct: 171 EVYKQYFFETKCRNPNPNLLQSECRGIDSRLWNSY 205
>RT25_CAEEL (Q9N361) Probable mitochondrial 28S ribosomal protein S25 (S25mt)| (MRP-S25) Length = 170 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/65 (29%), Positives = 31/65 (47%) Frame = -2 Query: 355 SPASGPAREFVKKNYGDIKTRNPTLPVLIRECSGVEPQLWARYDMGVERCVRLDGLTEAQ 176 +P AR+FV N+ ++ NP + ++ V P A + G E LDG+ + Sbjct: 40 TPEQSGARDFVYWNWAQLQYHNPKVQLVKHADKVVTPFARAYLNDGREVLFDLDGMKREE 99 Query: 175 IDKKL 161 I+K L Sbjct: 100 IEKLL 104
>RM43_HUMAN (Q8N983) 39S ribosomal protein L43, mitochondrial precursor (L43mt)| (MRP-L43) (Mitochondrial ribosomal protein bMRP36a) Length = 215 Score = 30.4 bits (67), Expect = 2.0 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Frame = -2 Query: 442 GTRKEPAAMAWRASLSRNVKEIR---FLFCQSSPASGPAREFVKKNYGDIKTRNPTLPVL 272 GT A L R V++++ F + +S AREFV++ D RNP + + Sbjct: 5 GTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIY 64 Query: 271 IRECSGVEPQLWARYDMGVERCVRLDGLTEAQIDKKLEELA 149 + P++ A Y G R + + +I +++LA Sbjct: 65 VNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLA 105
>IF2_CHLPN (Q9Z8M1) Translation initiation factor IF-2| Length = 890 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = -2 Query: 394 RNVKEIRFLFCQSSPASGPAREFVKKNYGDIKTRN 290 +N +E +F SPASGP R+ KKN D + R+ Sbjct: 224 QNNREKQFNPANRSPASGPKRDAGKKNLTDFRDRS 258
>NGFV2_TROCA (Q3HXX7) Venom nerve growth factor 2 precursor (vNGF-2)| Length = 244 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = -2 Query: 331 EFVKKNYGDIKTRNPTLPVLIRECSGVEPQLWARYDMGVERCVR 200 E K+ + + K RNP+ + EC G++ +LW Y + VR Sbjct: 170 EVYKQYFFETKCRNPSPNPVQSECRGIDSRLWNSYCTTTQTFVR 213
>NGFV4_TROCA (Q3HXX5) Venom nerve growth factor 4 precursor (vNGF-4)| Length = 244 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -2 Query: 331 EFVKKNYGDIKTRNPTLPVLIRECSGVEPQLWARYDMGVERCVR 200 E K+ + + K RNP + EC G++ +LW Y + VR Sbjct: 170 EVYKQYFFETKCRNPNPNPVQSECRGIDSRLWNSYCTTTQTFVR 213
>NGFV1_NOTSC (Q3HXY7) Venom nerve growth factor 1 precursor (vNGF-1)| Length = 244 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -2 Query: 331 EFVKKNYGDIKTRNPTLPVLIRECSGVEPQLWARYDMGVERCVR 200 E K+ + + K RNP + EC G++ +LW Y + VR Sbjct: 170 EVYKQYFFETKCRNPNPNPVQSECRGIDSRLWNSYCTTTQTFVR 213
>NGFV3_NOTSC (Q3HXY5) Venom nerve growth factor 3 precursor (vNGF-3)| Length = 244 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -2 Query: 331 EFVKKNYGDIKTRNPTLPVLIRECSGVEPQLWARY 227 E K+ + + K RNP + EC G++ +LW Y Sbjct: 170 EVYKQYFFETKCRNPNPNPVQSECRGIDSRLWNSY 204
>MMP9_HUMAN (P14780) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) [Contains: 67 kDa matrix metalloproteinase-9; 82 kDa matrix metalloproteinase-9] Length = 707 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +1 Query: 154 APPTSCQSGLLSSHPSERTSPHP 222 APPT C +G + HPSER + P Sbjct: 463 APPTVCPTGPPTVHPSERPTAGP 485 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,860,296 Number of Sequences: 219361 Number of extensions: 967418 Number of successful extensions: 2726 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2672 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2726 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
