ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32i13 |
|---|---|
| Clone Library Name | barley_pub |
>SINA5_ARATH (Q8S3N1) Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia| homolog 5) Length = 309 Score = 226 bits (575), Expect = 4e-59 Identities = 105/120 (87%), Positives = 112/120 (93%), Gaps = 1/120 (0%) Frame = -2 Query: 526 VFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPR 347 VF CFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE++ARNYTYSLEVGG+GRK WEGTPR Sbjct: 189 VFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEDDARNYTYSLEVGGSGRKQTWEGTPR 248 Query: 346 SIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQPNPDE-TCIPNLCS 170 S+RDSHRKVRDSHDGLIIQRNMALFFSGGD+KELKLRVTGRIWKEQ NPD CI ++CS Sbjct: 249 SVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDSGVCITSMCS 308
>SINA3_ARATH (Q84JL3) Ubiquitin ligase SINAT3 (EC 6.3.2.-) (Seven in absentia| homolog 3) Length = 326 Score = 223 bits (569), Expect = 2e-58 Identities = 106/120 (88%), Positives = 109/120 (90%), Gaps = 3/120 (2%) Frame = -2 Query: 526 VFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPR 347 VFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE EARNY YSLEVGG GRK++WEGTPR Sbjct: 206 VFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYNYSLEVGGYGRKLIWEGTPR 265 Query: 346 SIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQPNPDE---TCIPNL 176 S+RDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ E CIPNL Sbjct: 266 SVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQQSGEGGGACIPNL 325
>SINA4_ARATH (Q9STN8) Ubiquitin ligase SINAT4 (EC 6.3.2.-) (Seven in absentia| homolog 4) Length = 327 Score = 217 bits (553), Expect = 1e-56 Identities = 103/120 (85%), Positives = 111/120 (92%), Gaps = 1/120 (0%) Frame = -2 Query: 526 VFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPR 347 VFHCFGQYFCLHFEAFQLGM PVYMAFLRFMGDE +AR+Y+YSLEVGG+GRK+ WEGTPR Sbjct: 207 VFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEEDARSYSYSLEVGGSGRKLTWEGTPR 266 Query: 346 SIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQPNPDE-TCIPNLCS 170 SIRDSHRKVRDS+DGLIIQRNMALFFSGGDRKELKLRVTG+IWKEQ +PD IPNL S Sbjct: 267 SIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTGKIWKEQHSPDSGLSIPNLSS 326
>SINA2_ARATH (Q9M2P4) Ubiquitin ligase SINAT2 (EC 6.3.2.-) (Seven in absentia| homolog 2) Length = 308 Score = 191 bits (485), Expect = 1e-48 Identities = 87/106 (82%), Positives = 99/106 (93%) Frame = -2 Query: 526 VFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPR 347 VF+CFG+ FCLHFEAFQLGMAPVYMAFLRFMGDENEA+ ++YSLEVG +GRK+ W+G PR Sbjct: 203 VFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHGRKLTWQGIPR 262 Query: 346 SIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 209 SIRDSHRKVRDS DGLII RN+AL+FSGGDR+ELKLRVTGRIWKE+ Sbjct: 263 SIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVTGRIWKEE 308
>SINA1_ARATH (P93748) Putative ubiquitin ligase SINAT1 (EC 6.3.2.-) (Seven in| absentia homolog 1) Length = 305 Score = 185 bits (470), Expect = 6e-47 Identities = 84/106 (79%), Positives = 97/106 (91%) Frame = -2 Query: 526 VFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPR 347 VF+CFG+ FCLHFEAFQLGMAPVYMAFLRFMGDENEA+ ++YSLEVG + RK+ W+G PR Sbjct: 200 VFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHSRKLTWQGIPR 259 Query: 346 SIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 209 SIRDSHRKVRDS DGLII RN+AL+FSG D++ELKLRVTGRIWKE+ Sbjct: 260 SIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVTGRIWKEE 305
>SINA_DROVI (P29304) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 55.5 bits (132), Expect = 9e-08 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Frame = -2 Query: 517 CFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 CFG +F L E + + A ++ +G EA N+ Y LE+ GN R++ WE PRSI Sbjct: 216 CFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRSI 275 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVT 230 + + D L+ ++A F+ D L + VT Sbjct: 276 HEGVASAIHNSDCLVFDTSIAQLFA--DNGNLGINVT 310
>SINA_DROME (P21461) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 55.5 bits (132), Expect = 9e-08 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Frame = -2 Query: 517 CFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 CFG +F L E + + A ++ +G EA N+ Y LE+ GN R++ WE PRSI Sbjct: 216 CFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRSI 275 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVT 230 + + D L+ ++A F+ D L + VT Sbjct: 276 HEGVASAIHNSDCLVFDTSIAQLFA--DNGNLGINVT 310
>SINA_DROER (P61093) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 55.5 bits (132), Expect = 9e-08 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Frame = -2 Query: 517 CFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 CFG +F L E + + A ++ +G EA N+ Y LE+ GN R++ WE PRSI Sbjct: 216 CFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRSI 275 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVT 230 + + D L+ ++A F+ D L + VT Sbjct: 276 HEGVASAIHNSDCLVFDTSIAQLFA--DNGNLGINVT 310
>SINA_DROWI (Q8I147) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 331 Score = 55.5 bits (132), Expect = 9e-08 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Frame = -2 Query: 517 CFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 CFG +F L E + + A ++ +G EA N+ Y LE+ GN R++ WE PRSI Sbjct: 233 CFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRSI 292 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVT 230 + + D L+ ++A F+ D L + VT Sbjct: 293 HEGVASAIHNSDCLVFDTSIAQLFA--DNGNLGINVT 327
>SIAH2_BRARE (Q7SYL3) Ubiquitin ligase Siah2 (EC 6.3.2.-) (Seven in absentia| homolog 2-like) (Siah-2) Length = 331 Score = 55.1 bits (131), Expect = 1e-07 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Frame = -2 Query: 517 CFGQYFCLHFEAFQLGMA-PVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 CFG +F L E + + A + +G +A N+ Y LE+ GN R++ WE TPRSI Sbjct: 233 CFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSI 292 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVT 230 D + D L+ ++A F+ D L + VT Sbjct: 293 HDGVAAAIMNSDCLVFDTSIAHLFA--DNGNLGINVT 327
>SIAH2_RAT (Q8R4T2) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) Length = 325 Score = 53.9 bits (128), Expect = 3e-07 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Frame = -2 Query: 517 CFGQYFCLHFEAFQLGMA-PVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 CFG +F L E + + A + +G +A N+ Y LE+ GN R++ WE TPRSI Sbjct: 225 CFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSI 284 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVT 230 D + D L+ +A F+ D L + VT Sbjct: 285 HDGVAAAIMNSDCLVFDTAIAHLFA--DNGNLGINVT 319
>SIAH2_MOUSE (Q06986) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) (mSiah2) Length = 325 Score = 53.9 bits (128), Expect = 3e-07 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Frame = -2 Query: 517 CFGQYFCLHFEAFQLGMA-PVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 CFG +F L E + + A + +G +A N+ Y LE+ GN R++ WE TPRSI Sbjct: 225 CFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSI 284 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVT 230 D + D L+ +A F+ D L + VT Sbjct: 285 HDGVAAAIMNSDCLVFDTAIAHLFA--DNGNLGINVT 319
>SIAH2_HUMAN (O43255) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) (hSiah2) Length = 324 Score = 53.9 bits (128), Expect = 3e-07 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Frame = -2 Query: 517 CFGQYFCLHFEAFQLGMA-PVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 CFG +F L E + + A + +G +A N+ Y LE+ GN R++ WE TPRSI Sbjct: 224 CFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSI 283 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVT 230 D + D L+ +A F+ D L + VT Sbjct: 284 HDGVAAAIMNSDCLVFDTAIAHLFA--DNGNLGINVT 318
>SIAH2_XENLA (Q9I8X5) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Xsiah-2) Length = 313 Score = 53.9 bits (128), Expect = 3e-07 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 1/98 (1%) Frame = -2 Query: 520 HCFGQYFCLHFEAFQLGMA-PVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRS 344 +CF +F L E + + A + +G +A NY Y LE+ GN R++ WE TPRS Sbjct: 212 YCFNHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENYAYRLELNGNRRRLTWEATPRS 271 Query: 343 IRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVT 230 I D + D L+ +A F+ D L + VT Sbjct: 272 IHDGVAAAIMNSDCLVFDTAIAHLFA--DNGNLGINVT 307
>SINA_SCHMA (Q86MW9) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| homolog) (SmSINA) Length = 371 Score = 52.4 bits (124), Expect = 8e-07 Identities = 26/84 (30%), Positives = 41/84 (48%) Frame = -2 Query: 517 CFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSIR 338 CFG F L E + ++ A ++ +G +A + Y LE+ G+ R++ WE PRSI Sbjct: 269 CFGHSFMLVLEKQERVPDQIFFALVQLIGTRKQADQFVYRLELNGHRRRLTWEACPRSIH 328 Query: 337 DSHRKVRDSHDGLIIQRNMALFFS 266 D + D L+ N A F+ Sbjct: 329 DGVQSAIAVSDCLVFDSNTAHSFA 352
>SIAH1_RAT (Q920M9) Ubiquitin ligase SIAH1 (EC 6.3.2.-) (Seven in absentia| homolog 1) (Siah-1) (Siah-1a) Length = 282 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = -2 Query: 517 CFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 CFG +F L E + + A ++ +G +A N+ Y LE+ G+ R++ WE TPRSI Sbjct: 184 CFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSI 243 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFS 266 + + D L+ ++A F+ Sbjct: 244 HEGIATAIMNSDCLVFDTSIAQLFA 268
>SIAH1_HUMAN (Q8IUQ4) Ubiquitin ligase SIAH1 (EC 6.3.2.-) (Seven in absentia| homolog 1) (Siah-1) (Siah-1a) Length = 282 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = -2 Query: 517 CFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 CFG +F L E + + A ++ +G +A N+ Y LE+ G+ R++ WE TPRSI Sbjct: 184 CFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSI 243 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFS 266 + + D L+ ++A F+ Sbjct: 244 HEGIATAIMNSDCLVFDTSIAQLFA 268
>SIAH1_BRARE (Q7ZVG6) Ubiquitin ligase Siah1 (EC 6.3.2.-) (Seven in absentia| homolog 1) (Siah-1) Length = 282 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = -2 Query: 517 CFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 CFG +F L E + + A ++ +G +A N+ Y LE+ G+ R++ WE TPRSI Sbjct: 184 CFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSI 243 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFS 266 + + D L+ ++A F+ Sbjct: 244 HEGIATAIMNSDCLVFDTSIAQLFA 268
>SIA1B_MOUSE (Q06985) Ubiquitin ligase SIAH1B (EC 6.3.2.-) (Seven in absentia| homolog 1b) (Siah1b) (Siah-1b) Length = 282 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = -2 Query: 517 CFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 CFG +F L E + + A ++ +G +A N+ Y LE+ G+ R++ WE TPRSI Sbjct: 184 CFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSI 243 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFS 266 + + D L+ ++A F+ Sbjct: 244 HEGIATAIMNSDCLVFDTSIAQLFA 268
>SIA1A_MOUSE (P61092) Ubiquitin ligase SIAH1A (EC 6.3.2.-) (Seven in absentia| homolog 1a) (Siah1a) (Siah-1a) (mSiah-1a) Length = 282 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = -2 Query: 517 CFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 CFG +F L E + + A ++ +G +A N+ Y LE+ G+ R++ WE TPRSI Sbjct: 184 CFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSI 243 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFS 266 + + D L+ ++A F+ Sbjct: 244 HEGIATAIMNSDCLVFDTSIAQLFA 268
>SIA1_CAEEL (Q965X6) Ubiquitin ligase sia-1 (EC 6.3.2.-) (Seven in absentia| homolog 1) Length = 339 Score = 45.8 bits (107), Expect = 7e-05 Identities = 22/65 (33%), Positives = 34/65 (52%) Frame = -2 Query: 460 VYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSIRDSHRKVRDSHDGLIIQRNM 281 ++ A ++ +G + EA N+ Y LE+ + R+M WE TPRSI + D L N Sbjct: 256 MFYAVVQLIGSKKEADNFVYRLELSASRRRMSWEATPRSIHEGVVVAIQQSDCLAFDSNA 315 Query: 280 ALFFS 266 A F+ Sbjct: 316 AQLFA 320
>SINAL_DROME (Q8T3Y0) Probable ubiquitin ligase sina-like protein CG13030 (EC| 6.3.2.-) Length = 351 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Frame = -2 Query: 517 CFGQYFCLHFEAFQLGM-APVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSI 341 C G++F L E LG Y R +G +A + Y++ + R + W+ PRSI Sbjct: 249 CHGRHFLLSLEKINLGEDCQQYFTACRMIGSMKDAAEFVYNISLEAYNRTLRWQSKPRSI 308 Query: 340 RDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQPN 203 R++ ++ D L++ ++ FS + L L V R +E+ N Sbjct: 309 RENFSSFTNA-DFLVLNKHTVELFS--EDGNLALNVVIRKVEERTN 351
>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 624 Score = 30.8 bits (68), Expect = 2.4 Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Frame = +1 Query: 229 QSPSTSTPSCHH-----RRRTAPCSSG**GHHDCPGPSGDCHEC 345 +SP TPSCHH RRR G HH PG G H C Sbjct: 501 RSPPPRTPSCHHHHHHRRRRQRHRRRGSHHHHHHPGRHGH-HRC 543
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1157 Score = 30.8 bits (68), Expect = 2.4 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +2 Query: 395 EAVGVVPCFILIPHETKESHVYWCHAKLEGFKVQAEVLSKTMEH 526 E V + +I H KE VY+ K++G KV+AEV+S ++ Sbjct: 53 EEVPIKNIWIKTIHGEKEQPVYYLTFKIQGRKVEAEVISSPYDY 96
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1161 Score = 29.6 bits (65), Expect = 5.4 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 4/102 (3%) Frame = +2 Query: 233 HPQLQLLPVTTGEEQRHVPLDDEAIMTVP----DLPVTVTNASRGALPYHLPTVTADLEA 400 HP LL V Q PL+ E T D T+T L P T ++ Sbjct: 3 HPPRSLLQVKMDPLQLLQPLEAEIKGTKLKAHWDSGATITCVPEAFLEDERPIQTMLIKT 62 Query: 401 VGVVPCFILIPHETKESHVYWCHAKLEGFKVQAEVLSKTMEH 526 + H K+ VY+ K++G KV+AEVL+ ++ Sbjct: 63 I----------HGEKQQDVYYLTFKVQGRKVEAEVLASPYDY 94
>G3P_CLAPU (Q00584) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)| (GAPDH) Length = 337 Score = 29.6 bits (65), Expect = 5.4 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = +2 Query: 170 ATKVGYTGFIRIG-LLFPNPSSHPQLQLLPV 259 A KVG GF RIG ++F N HP+++++ V Sbjct: 2 AVKVGINGFGRIGRIVFRNAVEHPEIEVVAV 32
>ARGJ_BRAJA (P59610) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 413 Score = 29.3 bits (64), Expect = 7.1 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Frame = +2 Query: 311 TVPDLPVT----VTNASRGALPYHLPTVTADLEAVGVVPCFILIPHETKESHVYWCHAKL 478 TVPD+PV + A G + V + G + + + V WC AKL Sbjct: 12 TVPDMPVIAGVRLATAEAGIRYKNRTDVLLAVMDKGTAVAGVFTKSKCPSAPVEWCRAKL 71 Query: 479 EGFKVQAEVLS 511 +G K +A V++ Sbjct: 72 KGGKARALVVN 82
>YDJK_ECOLI (P76230) Hypothetical metabolite transport protein ydjK| Length = 459 Score = 28.9 bits (63), Expect = 9.2 Identities = 14/42 (33%), Positives = 26/42 (61%) Frame = -2 Query: 157 RSAMKMVVLFGWLVIYPLACPLCFDSPVRVPVLYYVEAILRG 32 +++M ++ L G+ +I + +C+ S V VP ++ EA LRG Sbjct: 349 QTSMLLITLIGFFLITFVYMYVCYASAVYVPEIWPTEAKLRG 390
>CLPX_PROMP (Q7UZK6) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 455 Score = 28.9 bits (63), Expect = 9.2 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 8/101 (7%) Frame = -2 Query: 421 EARNYTYSLEVGGNGRKM----VWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDR 254 ++ N + + +V G G + + EGT ++ + +HD + I + LF GG Sbjct: 218 KSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPNHDCIQIDTSQILFICGGAF 277 Query: 253 KELKLRVTGRIWKEQ----PNPDETCIPNLCS*ADQRSAMK 143 L+ V R+ K NPDE+ I N D R A+K Sbjct: 278 IGLEDIVQKRLGKNSIGFTTNPDESKI-NAKKIIDSRDALK 317
>GAG_FOAMV (P14349) Gag polyprotein (Core polyprotein) [Contains: Protease (EC| 3.4.23.-)] Length = 811 Score = 28.9 bits (63), Expect = 9.2 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = +2 Query: 434 HETKESHVYWCHAKLEGFKVQAEVLSKTMEH 526 H K+ +VY+ K++G KV+AEV++ E+ Sbjct: 683 HGEKQQNVYYVTFKVKGRKVEAEVIASPYEY 713 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,705,654 Number of Sequences: 219361 Number of extensions: 1863843 Number of successful extensions: 5560 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 5393 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5559 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
