Clone Information

BLAST Search Result

Clone Name	rbags32i08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY634576.1\| Triticum aestivum SET domain protein mRNA, comple...	335	1e-88
2	gb\|AY187718.2\| Zea mays SET domain protein SDG111 mRNA, complete...	190	4e-45
3	gb\|BT024023.1\| Zea mays clone EL01N0414B01 mRNA sequence	190	4e-45
4	ref\|XM_475460.1\| Oryza sativa (japonica cultivar-group), predic...	184	2e-43
5	gb\|AC129718.2\| Oryza sativa (japonica cultivar-group) chromosome...	184	2e-43
6	gb\|AY459341.1\| Oryza sativa (japonica cultivar-group) clone CL03...	184	2e-43
7	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	184	2e-43
8	dbj\|AK069035.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	184	2e-43
9	gb\|AY596552.1\| Saccharum officinarum clone SCCCRZ2001G10, comple...	176	6e-41
10	gb\|AY093419.1\| Zea mays SET domain protein 105 (set105) mRNA, co...	168	1e-38
11	gb\|AY112212.1\| Zea mays CL3507_2 mRNA sequence	157	5e-35
12	gb\|AY109913.1\| Zea mays CL3507_1 mRNA sequence	155	2e-34
13	gb\|AY634575.1\| Triticum aestivum cultivar PI-94640 SET domain pr...	135	2e-28
14	ref\|NM_191045.1\| Oryza sativa (japonica cultivar-group), predic...	66	2e-07
15	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	66	2e-07
16	dbj\|AP003260.5\| Oryza sativa (japonica cultivar-group) genomic D...	66	2e-07
17	dbj\|AP003247.4\| Oryza sativa (japonica cultivar-group) genomic D...	66	2e-07
18	dbj\|AK065227.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	66	2e-07
19	gb\|AF545813.1\| Zea mays SET domain protein 113 (sdg113) mRNA, co...	60	9e-06
20	gb\|AC141107.5\| Medicago truncatula clone mth2-34a12, complete se...	58	4e-05
21	ref\|NM_180436.1\| Arabidopsis thaliana SUVH1 (SU(VAR)3-9 HOMOLOG ...	54	6e-04
22	ref\|NM_120576.1\| Arabidopsis thaliana SUVH1 (SU(VAR)3-9 HOMOLOG ...	54	6e-04
23	gb\|AF344444.1\|AF344444 Arabidopsis thaliana SUVH1 (SUVH1) mRNA, ...	54	6e-04
24	dbj\|AB005245.2\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	54	6e-04
25	ref\|NM_128034.2\| Arabidopsis thaliana SDG21 (SET DOMAIN GROUP 21...	44	0.55
26	gb\|AC113406.2\| Homo sapiens chromosome 5 clone RP11-471O19, comp...	44	0.55
27	gb\|AC114964.2\| Homo sapiens chromosome 5 clone RP11-275B7, compl...	44	0.55
28	gb\|AC007266.5\| Arabidopsis thaliana chromosome 2 clone F27A10 ma...	44	0.55
29	gb\|AF344451.1\|AF344451 Arabidopsis thaliana SUVH8 (SUVH8) gene, ...	44	0.55
30	gb\|AC020982.6\| Homo sapiens chromosome 5 clone RP1-255M24, compl...	44	0.55
31	dbj\|AP003305.2\| Homo sapiens genomic DNA, chromosome 11q clone:R...	44	0.55
32	gb\|AC099782.2\| Homo sapiens chromosome 3 clone RP11-852E15, comp...	42	2.2
33	ref\|XM_624614.1\| PREDICTED: Apis mellifera similar to MGC78960 p...	42	2.2
34	emb\|BX005369.11\| Zebrafish DNA sequence from clone CH211-51H13 i...	42	2.2
35	gb\|AC005669.1\|AC005669 Homo sapiens chromosome 3, clone hRPK.165...	42	2.2
36	ref\|NM_101640.1\| Arabidopsis thaliana SUVH7 (SU(VAR)3-9 HOMOLOG ...	40	8.6
37	gb\|DQ481669.1\| Takifugu rubripes HoxDb gene cluster, complete se...	40	8.6
38	ref\|XM_755205.1\| Ustilago maydis 521 hypothetical protein (UM041...	40	8.6
39	emb\|AL356103.8\| Human DNA sequence from clone RP4-713A24 on chro...	40	8.6
40	emb\|CR394525.8\| Zebrafish DNA sequence from clone DKEY-24N17 in ...	40	8.6
41	gb\|AC025265.21\| Homo sapiens 12 BAC RP11-341G23 (Roswell Park Ca...	40	8.6
42	gb\|AF344450.1\|AF344450 Arabidopsis thaliana SUVH7 (SUVH7) mRNA, ...	40	8.6
43	gb\|AC034106.4\|F2H15 Sequence of BAC F2H15 from Arabidopsis thali...	40	8.6
44	gb\|AF115103.1\|AF115103 Streptococcus thermophilus bacteriophage ...	40	8.6
45	gb\|AC131028.13\| Mus musculus chromosome 3, clone RP23-293M23, co...	40	8.6
46	emb\|AL593847.36\| Mouse DNA sequence from clone RP23-170A23 on ch...	40	8.6
47	emb\|AL670680.6\| Mouse DNA sequence from clone RP23-314D24 on chr...	40	8.6

>gb|AY634576.1| Triticum aestivum SET domain protein mRNA, complete cds
          Length = 1440

 Score =  335 bits (169), Expect = 1e-88
 Identities = 265/295 (89%), Gaps = 4/295 (1%)
 Strand = Plus / Minus

                                                                        
Query: 325  atcaaaataacccgcgacaggttaatgatccacacaggcaggtcttg---ctacgattgg 381
            ||||||||||||| |||||||||||||||||||||||||||||||||   ||| || |||
Sbjct: 1330 atcaaaataacccacgacaggttaatgatccacacaggcaggtcttggctctatgactgg 1271

                                                                        
Query: 382  tcccggctccaaccacaccatagtcataagttaactccgtcataggagggatgtgattaa 441
            || |  |||||||||||||||||||||| |||||||| ||||| |||| |||||||||||
Sbjct: 1270 tctcttctccaaccacaccatagtcataggttaactctgtcatgggagcgatgtgattaa 1211

                                                                        
Query: 442  gtgcaaagaacattatatgtgggtgcttgtcatctccatggtcgtattgcactggttgcc 501
            ||||||| |||||||| |||||||||||||| |||||||||| ||| |||||||| ||||
Sbjct: 1210 gtgcaaaaaacattatgtgtgggtgcttgtcgtctccatggttgtactgcactggctgcc 1151

                                                                        
Query: 502  agaagacatttggggagcaacttgtggttcatgaaacgtgagaaatttccaatctgtttt 561
            ||||||||||||||||||||| |||||||||||||||| |||| |||||| |||| ||||
Sbjct: 1150 agaagacatttggggagcaac-tgtggttcatgaaacgcgagacatttcccatctttttt 1092

                                                                   
Query: 562  gcacttatcttgatgggcagcggctgaaattcatcaggcgatacatatgtgcttt 616
            |||||||||||||||||||| ||||||||||| ||||  ||||| || |||||||
Sbjct: 1091 gcacttatcttgatgggcagtggctgaaattcctcagctgatacgtacgtgcttt 1037



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                        
Query: 237  gacataggtagaatctaggtagcggcagaaacatctagcatattggttcgcatgttgatc 296
            |||||||||| ||||||||||||  |||||||||||||| |||||| | |||||||||||
Sbjct: 1404 gacataggtacaatctaggtagcaccagaaacatctagcttattggcttgcatgttgatc 1345

                    
Query: 297  caccacaa 304
            ||||||||
Sbjct: 1344 caccacaa 1337

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>gb|AY187718.2| Zea mays SET domain protein SDG111 mRNA, complete cds
          Length = 2413

 Score =  190 bits (96), Expect = 4e-45
 Identities = 196/228 (85%), Gaps = 1/228 (0%)
 Strand = Plus / Minus

                                                                        
Query: 387  gctccaaccacaccatagtcataagttaactccgtcataggagggatgtgattaagtgca 446
            |||||| | ||||||||||||||||| |  || ||||| || || || || || ||||||
Sbjct: 1959 gctccagcaacaccatagtcataagtcagttctgtcatgggtggaatatgtttcagtgca 1900

                                                                        
Query: 447  aagaacattatatgtgggtgcttgtcatctccatggtcgtattgcactggttgccagaag 506
            ||||||||||||||||||||    ||||||||||| || ||||| || ||||||||||||
Sbjct: 1899 aagaacattatatgtgggtgtccatcatctccatgatcatattgaacaggttgccagaag 1840

                                                                        
Query: 507  acatttggggagcaacttgtggttcatgaaacgtgagaaatttccaatctgttttgcact 566
            ||||| || |||||||| ||||||||||||||| |||| |||||| || | |||||||||
Sbjct: 1839 acattgggtgagcaact-gtggttcatgaaacgggagacatttcccatgttttttgcact 1781

                                                            
Query: 567  tatcttgatgggcagcggctgaaattcatcaggcgatacatatgtgct 614
            ||||||||| ||||| |||| ||||||||||| |||||||||||||||
Sbjct: 1780 tatcttgataggcagtggctcaaattcatcagccgatacatatgtgct 1733

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>gb|BT024023.1| Zea mays clone EL01N0414B01 mRNA sequence
          Length = 1607

 Score =  190 bits (96), Expect = 4e-45
 Identities = 196/228 (85%), Gaps = 1/228 (0%)
 Strand = Plus / Minus

                                                                        
Query: 387  gctccaaccacaccatagtcataagttaactccgtcataggagggatgtgattaagtgca 446
            |||||| | ||||||||||||||||| |  || ||||| || || || || || ||||||
Sbjct: 1170 gctccagcaacaccatagtcataagtcagttctgtcatgggtggaatatgtttcagtgca 1111

                                                                        
Query: 447  aagaacattatatgtgggtgcttgtcatctccatggtcgtattgcactggttgccagaag 506
            ||||||||||||||||||||    ||||||||||| || ||||| || ||||||||||||
Sbjct: 1110 aagaacattatatgtgggtgtccatcatctccatgatcatattgaaccggttgccagaag 1051

                                                                        
Query: 507  acatttggggagcaacttgtggttcatgaaacgtgagaaatttccaatctgttttgcact 566
            ||||| || |||||||| ||||||||||||||| |||| |||||| || | |||||||||
Sbjct: 1050 acattgggtgagcaact-gtggttcatgaaacgggagacatttcccatgttttttgcact 992

                                                            
Query: 567  tatcttgatgggcagcggctgaaattcatcaggcgatacatatgtgct 614
            ||||||||| ||||| |||| ||||||||||| |||||||||||||||
Sbjct: 991  tatcttgataggcagtggctcaaattcatcagccgatacatatgtgct 944

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>ref|XM_475460.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2019

 Score =  184 bits (93), Expect = 2e-43
 Identities = 203/237 (85%), Gaps = 2/237 (0%)
 Strand = Plus / Minus

                                                                        
Query: 396  acaccatagtcataagttaactccgtcataggagggatgtgattaagtgcaaagaacatt 455
            |||||||||||| |||| |  || ||||| ||||| ||||| || |||||||||||||| 
Sbjct: 1940 acaccatagtcaaaagtcagttctgtcatgggaggaatgtgcttcagtgcaaagaacatg 1881

                                                                        
Query: 456  atatgtgggtgcttgtcatctccatggtcgtattgcactggttgccagaagacatttggg 515
            |||||||||||  |||||||||||||||| |  || ||||| |||||||| ||||| |||
Sbjct: 1880 atatgtgggtggctgtcatctccatggtcatgctgaactggctgccagaaaacattcggg 1821

                                                                        
Query: 516  gagcaacttgtggttcatgaaacgtgagaaatttccaatctgttttgcacttatcttgat 575
            || |||||  ||||||||||||||||||| |||||| |||| ||||||||| ||||||||
Sbjct: 1820 gaacaacta-tggttcatgaaacgtgagacatttcccatcttttttgcactaatcttgat 1762

                                                                     
Query: 576  gggcagcggctgaaattcatcaggcgatacatatgtgcttttcctcacctatcaatt 632
            |||||| |||| |||||||||||  ||||||||||| | | |||||||| |||||||
Sbjct: 1761 gggcagtggctcaaattcatcagctgatacatatgtac-tctcctcaccaatcaatt 1706

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>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0088I06, complete sequence
          Length = 187651

 Score =  184 bits (93), Expect = 2e-43
 Identities = 203/237 (85%), Gaps = 2/237 (0%)
 Strand = Plus / Plus

                                                                         
Query: 396   acaccatagtcataagttaactccgtcataggagggatgtgattaagtgcaaagaacatt 455
             |||||||||||| |||| |  || ||||| ||||| ||||| || |||||||||||||| 
Sbjct: 40253 acaccatagtcaaaagtcagttctgtcatgggaggaatgtgcttcagtgcaaagaacatg 40312

                                                                         
Query: 456   atatgtgggtgcttgtcatctccatggtcgtattgcactggttgccagaagacatttggg 515
             |||||||||||  |||||||||||||||| |  || ||||| |||||||| ||||| |||
Sbjct: 40313 atatgtgggtggctgtcatctccatggtcatgctgaactggctgccagaaaacattcggg 40372

                                                                         
Query: 516   gagcaacttgtggttcatgaaacgtgagaaatttccaatctgttttgcacttatcttgat 575
             || |||||  ||||||||||||||||||| |||||| |||| ||||||||| ||||||||
Sbjct: 40373 gaacaacta-tggttcatgaaacgtgagacatttcccatcttttttgcactaatcttgat 40431

                                                                      
Query: 576   gggcagcggctgaaattcatcaggcgatacatatgtgcttttcctcacctatcaatt 632
             |||||| |||| |||||||||||  ||||||||||| | | |||||||| |||||||
Sbjct: 40432 gggcagtggctcaaattcatcagctgatacatatgtac-tctcctcaccaatcaatt 40487

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>gb|AY459341.1| Oryza sativa (japonica cultivar-group) clone CL031105.6 R2R3-MYB gene
             region
          Length = 58956

 Score =  184 bits (93), Expect = 2e-43
 Identities = 203/237 (85%), Gaps = 2/237 (0%)
 Strand = Plus / Minus

                                                                         
Query: 396   acaccatagtcataagttaactccgtcataggagggatgtgattaagtgcaaagaacatt 455
             |||||||||||| |||| |  || ||||| ||||| ||||| || |||||||||||||| 
Sbjct: 40645 acaccatagtcaaaagtcagttctgtcatgggaggaatgtgcttcagtgcaaagaacatg 40586

                                                                         
Query: 456   atatgtgggtgcttgtcatctccatggtcgtattgcactggttgccagaagacatttggg 515
             |||||||||||  |||||||||||||||| |  || ||||| |||||||| ||||| |||
Sbjct: 40585 atatgtgggtggctgtcatctccatggtcatgctgaactggctgccagaaaacattcggg 40526

                                                                         
Query: 516   gagcaacttgtggttcatgaaacgtgagaaatttccaatctgttttgcacttatcttgat 575
             || |||||  ||||||||||||||||||| |||||| |||| ||||||||| ||||||||
Sbjct: 40525 gaacaacta-tggttcatgaaacgtgagacatttcccatcttttttgcactaatcttgat 40467

                                                                      
Query: 576   gggcagcggctgaaattcatcaggcgatacatatgtgcttttcctcacctatcaatt 632
             |||||| |||| |||||||||||  ||||||||||| | | |||||||| |||||||
Sbjct: 40466 gggcagtggctcaaattcatcagctgatacatatgtac-tctcctcaccaatcaatt 40411

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  184 bits (93), Expect = 2e-43
 Identities = 203/237 (85%), Gaps = 2/237 (0%)
 Strand = Plus / Plus

                                                                            
Query: 396      acaccatagtcataagttaactccgtcataggagggatgtgattaagtgcaaagaacatt 455
                |||||||||||| |||| |  || ||||| ||||| ||||| || |||||||||||||| 
Sbjct: 23971764 acaccatagtcaaaagtcagttctgtcatgggaggaatgtgcttcagtgcaaagaacatg 23971823

                                                                            
Query: 456      atatgtgggtgcttgtcatctccatggtcgtattgcactggttgccagaagacatttggg 515
                |||||||||||  |||||||||||||||| |  || ||||| |||||||| ||||| |||
Sbjct: 23971824 atatgtgggtggctgtcatctccatggtcatgctgaactggctgccagaaaacattcggg 23971883

                                                                            
Query: 516      gagcaacttgtggttcatgaaacgtgagaaatttccaatctgttttgcacttatcttgat 575
                || |||||  ||||||||||||||||||| |||||| |||| ||||||||| ||||||||
Sbjct: 23971884 gaacaacta-tggttcatgaaacgtgagacatttcccatcttttttgcactaatcttgat 23971942

                                                                         
Query: 576      gggcagcggctgaaattcatcaggcgatacatatgtgcttttcctcacctatcaatt 632
                |||||| |||| |||||||||||  ||||||||||| | | |||||||| |||||||
Sbjct: 23971943 gggcagtggctcaaattcatcagctgatacatatgtac-tctcctcaccaatcaatt 23971998

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>dbj|AK069035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004N15, full
            insert sequence
          Length = 2721

 Score =  184 bits (93), Expect = 2e-43
 Identities = 203/237 (85%), Gaps = 2/237 (0%)
 Strand = Plus / Minus

                                                                        
Query: 396  acaccatagtcataagttaactccgtcataggagggatgtgattaagtgcaaagaacatt 455
            |||||||||||| |||| |  || ||||| ||||| ||||| || |||||||||||||| 
Sbjct: 2219 acaccatagtcaaaagtcagttctgtcatgggaggaatgtgcttcagtgcaaagaacatg 2160

                                                                        
Query: 456  atatgtgggtgcttgtcatctccatggtcgtattgcactggttgccagaagacatttggg 515
            |||||||||||  |||||||||||||||| |  || ||||| |||||||| ||||| |||
Sbjct: 2159 atatgtgggtggctgtcatctccatggtcatgctgaactggctgccagaaaacattcggg 2100

                                                                        
Query: 516  gagcaacttgtggttcatgaaacgtgagaaatttccaatctgttttgcacttatcttgat 575
            || |||||  ||||||||||||||||||| |||||| |||| ||||||||| ||||||||
Sbjct: 2099 gaacaacta-tggttcatgaaacgtgagacatttcccatcttttttgcactaatcttgat 2041

                                                                     
Query: 576  gggcagcggctgaaattcatcaggcgatacatatgtgcttttcctcacctatcaatt 632
            |||||| |||| |||||||||||  ||||||||||| | | |||||||| |||||||
Sbjct: 2040 gggcagtggctcaaattcatcagctgatacatatgtac-tctcctcaccaatcaatt 1985

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>gb|AY596552.1| Saccharum officinarum clone SCCCRZ2001G10, complete sequence
          Length = 2562

 Score =  176 bits (89), Expect = 6e-41
 Identities = 186/217 (85%), Gaps = 1/217 (0%)
 Strand = Plus / Plus

                                                                       
Query: 398 accatagtcataagttaactccgtcataggagggatgtgattaagtgcaaagaacattat 457
           ||||||||||||||| |  || ||||| || || || || || |||||||||||||||||
Sbjct: 533 accatagtcataagtcagttctgtcatgggtggaatatgcttcagtgcaaagaacattat 592

                                                                       
Query: 458 atgtgggtgcttgtcatctccatggtcgtattgcactggttgccagaagacatttgggga 517
           |||||||||    ||||||||||| || ||||| |||||||||||||||||||| || ||
Sbjct: 593 atgtgggtgtccatcatctccatgatcatattgaactggttgccagaagacattgggtga 652

                                                                       
Query: 518 gcaacttgtggttcatgaaacgtgagaaatttccaatctgttttgcacttatcttgatgg 577
           |||||| ||||||||||||||| |||| |||||| || | |||||||||||||||||| |
Sbjct: 653 gcaact-gtggttcatgaaacgggagacatttcccatgttttttgcacttatcttgatag 711

                                                
Query: 578 gcagcggctgaaattcatcaggcgatacatatgtgct 614
           |||| |||| |||||||||||  |||||||| |||||
Sbjct: 712 gcagtggctcaaattcatcagctgatacatacgtgct 748

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>gb|AY093419.1| Zea mays SET domain protein 105 (set105) mRNA, complete cds
          Length = 2487

 Score =  168 bits (85), Expect = 1e-38
 Identities = 194/229 (84%), Gaps = 1/229 (0%)
 Strand = Plus / Minus

                                                                        
Query: 387  gctccaaccacaccatagtcataagttaactccgtcataggagggatgtgattaagtgca 446
            |||||| | ||||||||||||||||| |  || ||||| || || || || || ||||||
Sbjct: 2081 gctccagcaacaccatagtcataagtcagttctgtcatgggtggaatatgcttcagtgca 2022

                                                                        
Query: 447  aagaacattatatgtgggtgcttgtcatctccatggtcgtattgcactggttgccagaag 506
            |||||||||||||| |||||    |||||||| || || ||||| ||||||||||| |||
Sbjct: 2021 aagaacattatatgcgggtgtccatcatctccgtgatcatattgaactggttgccaaaag 1962

                                                                        
Query: 507  acatttggggagcaacttgtggttcatgaaacgtgagaaatttccaatctgttttgcact 566
            ||||| || |||||||| ||||||||||||||| |||| |||||| || | |||||||||
Sbjct: 1961 acattgggtgagcaact-gtggttcatgaaacgggagacatttcccatgttttttgcact 1903

                                                             
Query: 567  tatcttgatgggcagcggctgaaattcatcaggcgatacatatgtgctt 615
            ||||||||  ||||| || | ||||||||||||||||||||||||||||
Sbjct: 1902 tatcttgacaggcagtggttcaaattcatcaggcgatacatatgtgctt 1854

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>gb|AY112212.1| Zea mays CL3507_2 mRNA sequence
          Length = 824

 Score =  157 bits (79), Expect = 5e-35
 Identities = 192/229 (83%), Gaps = 1/229 (0%)
 Strand = Plus / Plus

                                                                       
Query: 387 gctccaaccacaccatagtcataagttaactccgtcataggagggatgtgattaagtgca 446
           |||||| | ||||||||||||||||| |  || ||||| || || || || || ||||||
Sbjct: 468 gctccagcaacaccatagtcataagtcagttctgtcatgggtggaatatgcttcagtgca 527

                                                                       
Query: 447 aagaacattatatgtgggtgcttgtcatctccatggtcgtattgcactggttgccagaag 506
           |||||||||||||| |||||    |||||||| || || ||||| ||||||||||| |||
Sbjct: 528 aagaacattatatgcgggtgtccatcatctccgtgatcatattgaactggttgccaaaag 587

                                                                       
Query: 507 acatttggggagcaacttgtggttcatgaaacgtgagaaatttccaatctgttttgcact 566
           ||||| || |||||||| ||||||||||||||| |||| |||||| || | ||  |||||
Sbjct: 588 acattgggtgagcaact-gtggttcatgaaacgggagacatttcccatgttttnngcact 646

                                                            
Query: 567 tatcttgatgggcagcggctgaaattcatcaggcgatacatatgtgctt 615
           ||||||||  ||||| || | ||||||||||||||||||||||||||||
Sbjct: 647 tatcttgacaggcagtggttcaaattcatcaggcgatacatatgtgctt 695

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>gb|AY109913.1| Zea mays CL3507_1 mRNA sequence
          Length = 1269

 Score =  155 bits (78), Expect = 2e-34
 Identities = 190/228 (83%), Gaps = 1/228 (0%)
 Strand = Plus / Plus

                                                                       
Query: 387 gctccaaccacaccatagtcataagttaactccgtcataggagggatgtgattaagtgca 446
           |||||| | ||||||||||||||||| |  || ||||| || || || || || ||||||
Sbjct: 451 gctccagcaacaccatagtcataagtcagttctgtcatgggtggaatatgtttcagtgca 510

                                                                       
Query: 447 aagaacattatatgtgggtgcttgtcatctccatggtcgtattgcactggttgccagaag 506
           ||||||||||||||||||||    ||||||||||| || ||||| || ||||||||||||
Sbjct: 511 aagaacattatatgtgggtgtccatcatctccatgatcatattgaacaggttgccagaag 570

                                                                       
Query: 507 acatttggggagcaacttgtggttcatgaaacgtgagaaatttccaatctgttttgcact 566
           ||||| || ||||||| ||||||||||||||||  ||| |||||| ||       |||||
Sbjct: 571 acattgggtgagcaac-tgtggttcatgaaacggcagacatttcccatgnnnnnngcact 629

                                                           
Query: 567 tatcttgatgggcagcggctgaaattcatcaggcgatacatatgtgct 614
           ||||||||| ||||| |||| ||||||||||| |||||||||||||||
Sbjct: 630 tatcttgataggcagtggctcaaattcatcagccgatacatatgtgct 677

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>gb|AY634575.1| Triticum aestivum cultivar PI-94640 SET domain protein gene, complete
            cds
          Length = 2259

 Score =  135 bits (68), Expect = 2e-28
 Identities = 168/200 (84%), Gaps = 1/200 (0%)
 Strand = Plus / Minus

                                                                        
Query: 387  gctccaaccacaccatagtcataagttaactccgtcataggagggatgtgattaagtgca 446
            ||||||| | |||||||||||||||| | ||| ||||| ||||||||||| || || |||
Sbjct: 2159 gctccaatctcaccatagtcataagtcagctctgtcatgggagggatgtgctttagcgca 2100

                                                                        
Query: 447  aagaacattatatgtgggtgcttgtcatctccatggtcgtattgcactggttgccagaag 506
            |||||||| |||||||||||   |||||||||||||||  | || ||||| |||||||||
Sbjct: 2099 aagaacatgatatgtgggtgaccgtcatctccatggtcaaactgaactggctgccagaag 2040

                                                                        
Query: 507  acatttggggagcaacttgtggttcatgaaacgtgagaaatttccaatctgttttgcact 566
             | || |||||||||| | || ||||||||||||||||  ||||| || |  ||||| ||
Sbjct: 2039 gcgttaggggagcaac-tatgattcatgaaacgtgagatgtttcccattttctttgcgct 1981

                                
Query: 567  tatcttgatgggcagcggct 586
            ||||||||||||||| ||||
Sbjct: 1980 tatcttgatgggcagtggct 1961

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>ref|NM_191045.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2211

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 94/113 (83%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                        
Query: 474  tctccatggtcgtattgcactggttgccagaagacatttggggagcaacttgtggttcat 533
            |||||||||||  |||| |||||||||||||||   || |||  ||||||  ||||||||
Sbjct: 2048 tctccatggtcaaattgaactggttgccagaaggtgttagggttgcaacta-tggttcat 1990

                                                                 
Query: 534  gaaacgtgagaaatttccaatctgttttgcacttatcttgatgggcagcggct 586
            ||||||||  | |||||| || |   |||||||||||||||||||||||||||
Sbjct: 1989 gaaacgtgcaacatttcccattttcattgcacttatcttgatgggcagcggct 1937

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 94/113 (83%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                            
Query: 474      tctccatggtcgtattgcactggttgccagaagacatttggggagcaacttgtggttcat 533
                |||||||||||  |||| |||||||||||||||   || |||  ||||||  ||||||||
Sbjct: 34476596 tctccatggtcaaattgaactggttgccagaaggtgttagggttgcaacta-tggttcat 34476538

                                                                     
Query: 534      gaaacgtgagaaatttccaatctgttttgcacttatcttgatgggcagcggct 586
                ||||||||  | |||||| || |   |||||||||||||||||||||||||||
Sbjct: 34476537 gaaacgtgcaacatttcccattttcattgcacttatcttgatgggcagcggct 34476485

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>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0468B07
          Length = 169071

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 94/113 (83%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                          
Query: 474    tctccatggtcgtattgcactggttgccagaagacatttggggagcaacttgtggttcat 533
              |||||||||||  |||| |||||||||||||||   || |||  ||||||  ||||||||
Sbjct: 158940 tctccatggtcaaattgaactggttgccagaaggtgttagggttgcaacta-tggttcat 158882

                                                                   
Query: 534    gaaacgtgagaaatttccaatctgttttgcacttatcttgatgggcagcggct 586
              ||||||||  | |||||| || |   |||||||||||||||||||||||||||
Sbjct: 158881 gaaacgtgcaacatttcccattttcattgcacttatcttgatgggcagcggct 158829

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>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0425G02
          Length = 155432

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 94/113 (83%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                         
Query: 474   tctccatggtcgtattgcactggttgccagaagacatttggggagcaacttgtggttcat 533
             |||||||||||  |||| |||||||||||||||   || |||  ||||||  ||||||||
Sbjct: 52315 tctccatggtcaaattgaactggttgccagaaggtgttagggttgcaacta-tggttcat 52257

                                                                  
Query: 534   gaaacgtgagaaatttccaatctgttttgcacttatcttgatgggcagcggct 586
             ||||||||  | |||||| || |   |||||||||||||||||||||||||||
Sbjct: 52256 gaaacgtgcaacatttcccattttcattgcacttatcttgatgggcagcggct 52204

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>dbj|AK065227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H03, full
            insert sequence
          Length = 2926

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 94/113 (83%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                        
Query: 474  tctccatggtcgtattgcactggttgccagaagacatttggggagcaacttgtggttcat 533
            |||||||||||  |||| |||||||||||||||   || |||  ||||||  ||||||||
Sbjct: 2351 tctccatggtcaaattgaactggttgccagaaggtgttagggttgcaacta-tggttcat 2293

                                                                 
Query: 534  gaaacgtgagaaatttccaatctgttttgcacttatcttgatgggcagcggct 586
            ||||||||  | |||||| || |   |||||||||||||||||||||||||||
Sbjct: 2292 gaaacgtgcaacatttcccattttcattgcacttatcttgatgggcagcggct 2240

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>gb|AF545813.1| Zea mays SET domain protein 113 (sdg113) mRNA, complete cds
          Length = 2428

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                        
Query: 387  gctccaaccacaccatagtcataagttaactccgtcataggagggatgtgattaagtgca 446
            ||||||||  |||||||||||||||| ||||| ||||| ||||| || || || |  |||
Sbjct: 2265 gctccaacgtcaccatagtcataagtcaactctgtcatgggaggaatatgcttcaaagca 2206

                              
Query: 447  aagaacattatatgtggg 464
            |||||||| |||||||||
Sbjct: 2205 aagaacatgatatgtggg 2188

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>gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete sequence
          Length = 142659

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 399   ccatagtcataagttaactccgtcataggagggatgtgattaagtgcaaagaa 451
             ||||| |||||||||| |||| ||||||||||||||||  ||| |||||||||
Sbjct: 43030 ccataatcataagttagctccatcataggagggatgtgtctaattgcaaagaa 43082

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>ref|NM_180436.1| Arabidopsis thaliana SUVH1 (SU(VAR)3-9 HOMOLOG 1) AT5G04940 (SUVH1)
            transcript variant AT5G04940.2 mRNA, complete cds
          Length = 2740

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 399  ccatagtcataagttaactccgtcataggagggatgtga 437
            |||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 2278 ccatagtcgtaagttaactcagtcattggagggatgtga 2240

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>ref|NM_120576.1| Arabidopsis thaliana SUVH1 (SU(VAR)3-9 HOMOLOG 1) AT5G04940 (SUVH1)
            transcript variant AT5G04940.1 mRNA, complete cds
          Length = 2824

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 399  ccatagtcataagttaactccgtcataggagggatgtga 437
            |||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 2278 ccatagtcgtaagttaactcagtcattggagggatgtga 2240

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>gb|AF344444.1|AF344444 Arabidopsis thaliana SUVH1 (SUVH1) mRNA, complete cds
          Length = 2824

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 399  ccatagtcataagttaactccgtcataggagggatgtga 437
            |||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 2278 ccatagtcgtaagttaactcagtcattggagggatgtga 2240

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>dbj|AB005245.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUG13
          Length = 86630

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 399   ccatagtcataagttaactccgtcataggagggatgtga 437
             |||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 21941 ccatagtcgtaagttaactcagtcattggagggatgtga 21979

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>ref|NM_128034.2| Arabidopsis thaliana SDG21 (SET DOMAIN GROUP 21) AT2G24740 (SDG21)
            mRNA, complete cds
          Length = 2268

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 399  ccatagtcataagttaactccgtcataggagggatgtg 436
            ||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 2168 ccatagtcatatgttaactctgtcattggaggaatgtg 2131

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>gb|AC113406.2| Homo sapiens chromosome 5 clone RP11-471O19, complete sequence
          Length = 147183

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 540   tgagaaatttccaatctgttttgcac 565
             |||||||||||||| |||||||||||
Sbjct: 63165 tgagaaatttccaaactgttttgcac 63140

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>gb|AC114964.2| Homo sapiens chromosome 5 clone RP11-275B7, complete sequence
          Length = 171025

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 540    tgagaaatttccaatctgttttgcac 565
              |||||||||||||| |||||||||||
Sbjct: 147696 tgagaaatttccaaactgttttgcac 147671

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>gb|AC007266.5| Arabidopsis thaliana chromosome 2 clone F27A10 map mi238, complete
             sequence
          Length = 66237

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 399   ccatagtcataagttaactccgtcataggagggatgtg 436
             ||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 26691 ccatagtcatatgttaactctgtcattggaggaatgtg 26728

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>gb|AF344451.1|AF344451 Arabidopsis thaliana SUVH8 (SUVH8) gene, complete cds
          Length = 2268

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 399  ccatagtcataagttaactccgtcataggagggatgtg 436
            ||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 2168 ccatagtcatatgttaactctgtcattggaggaatgtg 2131

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>gb|AC020982.6| Homo sapiens chromosome 5 clone RP1-255M24, complete sequence
          Length = 137703

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 540   tgagaaatttccaatctgttttgcac 565
             |||||||||||||| |||||||||||
Sbjct: 91900 tgagaaatttccaaactgttttgcac 91925

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>dbj|AP003305.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-667E8, complete
              sequence
          Length = 134764

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 540    tgagaaatttccaatctgtttt 561
              ||||||||||||||||||||||
Sbjct: 102011 tgagaaatttccaatctgtttt 101990

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>gb|AC099782.2| Homo sapiens chromosome 3 clone RP11-852E15, complete sequence
          Length = 209772

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 74    accaccaagtatcaggacaaatggtgggc 102
             ||||||||||| ||| |||||||||||||
Sbjct: 50875 accaccaagtaccagaacaaatggtgggc 50903

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>ref|XM_624614.1| PREDICTED: Apis mellifera similar to MGC78960 protein (LOC552238),
            mRNA
          Length = 1965

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 299  ccacaatatacatgtgccataagtg 323
            |||||||||||||||||||| ||||
Sbjct: 1548 ccacaatatacatgtgccatcagtg 1524

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>emb|BX005369.11| Zebrafish DNA sequence from clone CH211-51H13 in linkage group 3,
             complete sequence
          Length = 187523

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 552   aatctgttttgcacttatctt 572
             |||||||||||||||||||||
Sbjct: 97782 aatctgttttgcacttatctt 97762

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>gb|AC005669.1|AC005669 Homo sapiens chromosome 3, clone hRPK.165_I_16, complete sequence
          Length = 176968

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 74    accaccaagtatcaggacaaatggtgggc 102
             ||||||||||| ||| |||||||||||||
Sbjct: 41913 accaccaagtaccagaacaaatggtgggc 41885

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>ref|NM_101640.1| Arabidopsis thaliana SUVH7 (SU(VAR)3-9 HOMOLOG 7); histone-lysine
            N-methyltransferase/ zinc ion binding AT1G17770 (SUVH7)
            mRNA, complete cds
          Length = 2082

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 399  ccatagtcataagttaactccgtcataggagg 430
            ||||||||||| |||||||| ||||| |||||
Sbjct: 1979 ccatagtcatatgttaactctgtcatcggagg 1948

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>gb|DQ481669.1| Takifugu rubripes HoxDb gene cluster, complete sequence
          Length = 398525

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    gtcataggagggatgtgatt 439
              ||||||||||||||||||||
Sbjct: 256463 gtcataggagggatgtgatt 256444

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>ref|XM_755205.1| Ustilago maydis 521 hypothetical protein (UM04151.1) partial mRNA
          Length = 2553

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  tggcacgacatgggcattct 163
            ||||||||||||||||||||
Sbjct: 1756 tggcacgacatgggcattct 1775

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>emb|AL356103.8| Human DNA sequence from clone RP4-713A24 on chromosome 1p22.2-31.1
            Contains STSs and GSSs, complete sequence
          Length = 112069

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   aatggatggcaaagaaggaa 37
            ||||||||||||||||||||
Sbjct: 2745 aatggatggcaaagaaggaa 2764

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>emb|CR394525.8| Zebrafish DNA sequence from clone DKEY-24N17 in linkage group 10,
              complete sequence
          Length = 215862

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     aagaaggaagacagattagc 48
              ||||||||||||||||||||
Sbjct: 152966 aagaaggaagacagattagc 152985

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>gb|AC025265.21| Homo sapiens 12 BAC RP11-341G23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 180064

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 529    ttcatgaaacgtgagaaatttcca 552
              ||||||||| ||||||||||||||
Sbjct: 100532 ttcatgaaaggtgagaaatttcca 100509

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>gb|AF344450.1|AF344450 Arabidopsis thaliana SUVH7 (SUVH7) mRNA, complete cds
          Length = 2082

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 399  ccatagtcataagttaactccgtcataggagg 430
            ||||||||||| |||||||| ||||| |||||
Sbjct: 1979 ccatagtcatatgttaactctgtcatcggagg 1948

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>gb|AC034106.4|F2H15 Sequence of BAC F2H15 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 75133

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 399  ccatagtcataagttaactccgtcataggagg 430
            ||||||||||| |||||||| ||||| |||||
Sbjct: 3730 ccatagtcatatgttaactctgtcatcggagg 3699

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>gb|AF115103.1|AF115103 Streptococcus thermophilus bacteriophage Sfi21, complete genome
          Length = 40739

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 425  aggagggatgtgattaagtg 444
            ||||||||||||||||||||
Sbjct: 6727 aggagggatgtgattaagtg 6746

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>gb|AC131028.13| Mus musculus chromosome 3, clone RP23-293M23, complete sequence
          Length = 264928

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     atggcaaagaaggaagacag 42
              ||||||||||||||||||||
Sbjct: 119091 atggcaaagaaggaagacag 119072

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>emb|AL593847.36| Mouse DNA sequence from clone RP23-170A23 on chromosome 11, complete
              sequence
          Length = 222315

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     tggcaaagaaggaagacaga 43
              ||||||||||||||||||||
Sbjct: 106781 tggcaaagaaggaagacaga 106762

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>emb|AL670680.6| Mouse DNA sequence from clone RP23-314D24 on chromosome 4, complete
             sequence
          Length = 150897

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 94    atggtgggcacaaagccaccatcc 117
             |||| |||||||||||||||||||
Sbjct: 37323 atggggggcacaaagccaccatcc 37346


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,999,641
Number of Sequences: 3902068
Number of extensions: 4999641
Number of successful extensions: 125570
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125400
Number of HSP's gapped (non-prelim): 139
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result