>HM10_CAEEL (P41935) Homeobox protein ceh-10|
          Length = 344

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
 Frame = -3

Query: 571 FRLYG---KEGYPLVDIMIRESE---PSPKAGERILCRHPFLESKRAYVVPQHVEELLHC 410
           + LYG   +   PL + + + +E   P   A   +L  H     K++     H+E +  C
Sbjct: 207 YGLYGAMVRHSLPLPETITKSAEAADPQQSAAPWLLGMH-----KKSMEAAAHLESVEKC 261

Query: 409 YWPGSSDKPRAELPPLEK-----IRSRCMQQLEKLRPDHIRRLN 293
               S D  R   PP+++      + R ++ +++  P H   LN
Sbjct: 262 DMSDSDDDDRPVTPPVQRQVKNEYKPRIIEHVQQQAPQHQSSLN 305

>YQJE_BACSU (P54542) Hypothetical protein yqjE|
          Length = 371

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = -1

Query: 192 HKLESDHILASIVIRYTTSKKVRAVLLYNMTIHQLIAPSRRILFLSPVSICTNSLPV*RL 13
           + L+SD  + +I++   T  KVRA  ++  T H  + P + I  ++  S   + +P+ R+
Sbjct: 160 YALDSDGKVGNIIVAAPTQAKVRAA-IFGKTAHAGVEPEKGISAITIASKAISKMPLGRI 218

>T2H2_HAEPA (P36433) Type II restriction enzyme HpaII (EC 3.1.21.4)|
           (Endonuclease HpaII) (R.HpaII)
          Length = 358

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 313 DHIRRLNPTPYKVSVSAKLYEFIHYLWLNEAPVG 212
           +HI RLNP  Y +S +   YE+    +LN+  +G
Sbjct: 247 EHISRLNPLNYNLSCNHNYYEYKVKHFLNDVALG 280


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,760,583
Number of Sequences: 219361
Number of extensions: 1787323
Number of successful extensions: 4207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4205
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)