>dbj|AK099191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110O20, full
            insert sequence
          Length = 2128

 Score =  170 bits (86), Expect = 2e-39
 Identities = 133/149 (89%)
 Strand = Plus / Minus

                                                                        
Query: 193  atctactgtaattcgcctactggcgcctcgttcagccataggtaatgaatgaactcatac 252
            ||||| ||||| || |||||||| ||||| |||| ||||||| |||| || |||||||||
Sbjct: 1870 atctattgtaactctcctactggggcctcattcaaccatagggaatggataaactcatac 1811

                                                                        
Query: 253  agctttgcactcacactcaccttgtaaggtgtcggatttagccgcctgatgtgatccngc 312
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||  | 
Sbjct: 1810 agctttgcactcacactcaccttgtaaggtgtcggatttaaccgcctgatgtgatctggt 1751

                                         
Query: 313  cgcagtttttcgagctgttgcatacagcg 341
            || |||||||| ||||||||||| |||||
Sbjct: 1750 cgaagtttttcaagctgttgcatgcagcg 1722

>dbj|AK119236.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D09, full
            insert sequence
          Length = 1972

 Score =  168 bits (85), Expect = 8e-39
 Identities = 141/160 (88%)
 Strand = Plus / Minus

                                                                        
Query: 193  atctactgtaattcgcctactggcgcctcgttcagccataggtaatgaatgaactcatac 252
            ||||| ||||| || |||||||| ||||| |||| ||||||| |||| || |||||||||
Sbjct: 1884 atctattgtaactctcctactggggcctcattcaaccatagggaatggataaactcatac 1825

                                                                        
Query: 253  agctttgcactcacactcaccttgtaaggtgtcggatttagccgcctgatgtgatccngc 312
            |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||  | 
Sbjct: 1824 agctttgcactcacactcaccttgtaaggtgttggatttaaccgcctgatgtgatctggt 1765

                                                    
Query: 313  cgcagtttttcgagctgttgcatacagcggcttctgatct 352
            || |||||||| ||||||||||| ||||| | ||||||||
Sbjct: 1764 cgaagtttttcaagctgttgcatgcagcgccctctgatct 1725

>dbj|AK067438.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013103F09, full
            insert sequence
          Length = 2216

 Score =  168 bits (85), Expect = 8e-39
 Identities = 141/160 (88%)
 Strand = Plus / Minus

                                                                        
Query: 193  atctactgtaattcgcctactggcgcctcgttcagccataggtaatgaatgaactcatac 252
            ||||| ||||| || |||||||| ||||| |||| ||||||| |||| || |||||||||
Sbjct: 1883 atctattgtaactctcctactggggcctcattcaaccatagggaatggataaactcatac 1824

                                                                        
Query: 253  agctttgcactcacactcaccttgtaaggtgtcggatttagccgcctgatgtgatccngc 312
            |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||  | 
Sbjct: 1823 agctttgcactcacactcaccttgtaaggtgttggatttaaccgcctgatgtgatctggt 1764

                                                    
Query: 313  cgcagtttttcgagctgttgcatacagcggcttctgatct 352
            || |||||||| ||||||||||| ||||| | ||||||||
Sbjct: 1763 cgaagtttttcaagctgttgcatgcagcgccctctgatct 1724

>ref|NM_185227.2| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1608

 Score =  165 bits (83), Expect = 1e-37
 Identities = 136/154 (88%)
 Strand = Plus / Minus

                                                                        
Query: 199  tgtaattcgcctactggcgcctcgttcagccataggtaatgaatgaactcatacagcttt 258
            ||||| || |||||||| ||||| |||| ||||||| |||| || |||||||||||||||
Sbjct: 1604 tgtaactctcctactggggcctcattcaaccatagggaatggataaactcatacagcttt 1545

                                                                        
Query: 259  gcactcacactcaccttgtaaggtgtcggatttagccgcctgatgtgatccngccgcagt 318
            |||||||||||||||||||||||||| ||||||| |||||||||||||||  | || |||
Sbjct: 1544 gcactcacactcaccttgtaaggtgttggatttaaccgcctgatgtgatctggtcgaagt 1485

                                              
Query: 319  ttttcgagctgttgcatacagcggcttctgatct 352
            ||||| ||||||||||| ||||| | ||||||||
Sbjct: 1484 ttttcaagctgttgcatgcagcgccctctgatct 1451

>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16,
              complete sequence
          Length = 163738

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                          
Query: 193    atctactgtaattcgcctactggcgcctcgttcagccataggtaatgaatgaactcatac 252
              ||||| ||||| || |||||||| ||||| |||| ||||||| |||| || |||||||||
Sbjct: 139687 atctattgtaactctcctactggggcctcattcaaccatagggaatggataaactcatac 139628

                                    
Query: 253    agctttgcactcacactcacct 274
              ||||||||||||||||||||||
Sbjct: 139627 agctttgcactcacactcacct 139606



 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                          
Query: 271    accttgtaaggtgtcggatttagccgcctgatgtgatccngccgcagtttttcgagctgt 330
              |||||||||||||| ||||||| |||||||||||||||  | || |||||||| ||||||
Sbjct: 139527 accttgtaaggtgttggatttaaccgcctgatgtgatctggtcgaagtttttcaagctgt 139468

                                    
Query: 331    tgcatacagcggcttctgatct 352
              ||||| ||||| | ||||||||
Sbjct: 139467 tgcatgcagcgccctctgatct 139446

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                            
Query: 193      atctactgtaattcgcctactggcgcctcgttcagccataggtaatgaatgaactcatac 252
                ||||| ||||| || |||||||| ||||| |||| ||||||| |||| || |||||||||
Sbjct: 21326213 atctattgtaactctcctactggggcctcattcaaccatagggaatggataaactcatac 21326154

                                      
Query: 253      agctttgcactcacactcacct 274
                ||||||||||||||||||||||
Sbjct: 21326153 agctttgcactcacactcacct 21326132



 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 271      accttgtaaggtgtcggatttagccgcctgatgtgatccngccgcagtttttcgagctgt 330
                |||||||||||||| ||||||| |||||||||||||||  | || |||||||| ||||||
Sbjct: 21326053 accttgtaaggtgttggatttaaccgcctgatgtgatctggtcgaagtttttcaagctgt 21325994

                                      
Query: 331      tgcatacagcggcttctgatct 352
                ||||| ||||| | ||||||||
Sbjct: 21325993 tgcatgcagcgccctctgatct 21325972

>gb|AY106349.1| Zea mays PCO103153 mRNA sequence
          Length = 511

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                       
Query: 214 ggcgcctcgttcagccataggtaatgaatgaactcatacagctttgcactcacactcacc 273
           ||||| ||||| ||||| | | |||| ||||| ||||||||||| |||||||| || |||
Sbjct: 184 ggcgcttcgttgagccacaagaaatggatgaagtcatacagcttagcactcacgcttacc 125

                                     
Query: 274 ttgtaaggtgtcggatttagccgcct 299
           |||||||| ||||| || ||||||||
Sbjct: 124 ttgtaaggcgtcgggttcagccgcct 99

>gb|AY214336.1| Medicago truncatula nicotinate phosphoribosyltransferase-like protein
            mRNA, complete cds
          Length = 2018

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 211  actggcgcctcgttcagccataggtaatgaatgaactcatacagctttgcactcacactc 270
            ||||| ||||| || ||||| | | |||||||||||||||| |  |||||||||||||| 
Sbjct: 1687 actggtgcctcattgagccacaagaaatgaatgaactcatataattttgcactcacacta 1628

                    
Query: 271  accttgta 278
            ||||||||
Sbjct: 1627 accttgta 1620

>ref|NM_004952.3| Homo sapiens ephrin-A3 (EFNA3), mRNA
          Length = 1798

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 43   aaactggagataaaaataaaa 63
            |||||||||||||||||||||
Sbjct: 1764 aaactggagataaaaataaaa 1784

>gb|AC016143.34| Homo sapiens 12 BAC RP11-350F4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 54686

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    ctttatactggcaatgaattt 32
             |||||||||||||||||||||
Sbjct: 51215 ctttatactggcaatgaattt 51195

>emb|CR847792.4| Zebrafish DNA sequence from clone DKEY-22A20 in linkage group 3,
             complete sequence
          Length = 106088

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    gaaactggagataaaaataaa 62
             |||||||||||||||||||||
Sbjct: 84479 gaaactggagataaaaataaa 84499

>gb|AC117709.16| Mus musculus chromosome 8, clone RP23-475N7, complete sequence
          Length = 187186

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 43     aaactggagataaaaataaaa 63
              |||||||||||||||||||||
Sbjct: 102848 aaactggagataaaaataaaa 102868

>emb|CR388224.11| Zebrafish DNA sequence from clone CH211-23L10 in linkage group 3,
             complete sequence
          Length = 130988

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 42    gaaactggagataaaaataaa 62
             |||||||||||||||||||||
Sbjct: 36726 gaaactggagataaaaataaa 36706

>ref|NM_204438.1| Gallus gallus chemokine (C-C motif) ligand 20 (CCL20), mRNA
          Length = 883

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 39  atggaaactggagataaaaataaa 62
           ||||||||||||| ||||||||||
Sbjct: 822 atggaaactggagttaaaaataaa 845

>emb|CT010576.9| Mouse DNA sequence from clone RP23-193B21 on chromosome 16, complete
              sequence
          Length = 208110

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 40     tggaaactggagataaaaataaaattct 67
              |||||| |||||||||||||||| ||||
Sbjct: 117401 tggaaagtggagataaaaataaatttct 117374

>ref|XM_671652.1| Plasmodium berghei strain ANKA hypothetical protein (PB001640.02.0)
           partial mRNA
          Length = 1653

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 46  ctggagataaaaataaaatt 65
           ||||||||||||||||||||
Sbjct: 464 ctggagataaaaataaaatt 483

>emb|AL136136.7| Human DNA sequence from clone RP11-141E20 on chromosome
          1q31.2-31.3 Contains GSSs and STSs, complete sequence
          Length = 146158

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 49 gagataaaaataaaattcta 68
          ||||||||||||||||||||
Sbjct: 91 gagataaaaataaaattcta 72

>ref|NM_001030693.1| Gallus gallus toll-like receptor 4 (TLR4), mRNA
          Length = 3532

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 314  gcagtttttcgagctgttgc 333
            ||||||||||||||||||||
Sbjct: 2736 gcagtttttcgagctgttgc 2717

>emb|AJ543651.1|SYN543651 Synechococcus sp. PCC 7002 smc gene
          Length = 3630

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 314  gcagtttttcgagctgttgc 333
            ||||||||||||||||||||
Sbjct: 2875 gcagtttttcgagctgttgc 2856

>emb|AJ421031.1|AVU421031 Artemisia vulgaris mRNA for profilin, isoallergen 2
          Length = 634

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 36  catatggaaactggagataaaaataaaa 63
           |||||||||||| |||||||||| ||||
Sbjct: 527 catatggaaactagagataaaaagaaaa 500

>gb|AC119409.25| Medicago truncatula clone mth2-10i9, complete sequence
          Length = 127954

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     aaaaataaaattctacgaga 73
              ||||||||||||||||||||
Sbjct: 112169 aaaaataaaattctacgaga 112188

>gb|AC093561.2| Homo sapiens chromosome 1 clone RP11-401A10, complete sequence
          Length = 184330

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     gagataaaaataaaattcta 68
              ||||||||||||||||||||
Sbjct: 140975 gagataaaaataaaattcta 140956

>gb|AC097066.2| Homo sapiens chromosome 1 clone RP11-575B7, complete sequence
          Length = 168686

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     tttatactggcaatgaattt 32
              ||||||||||||||||||||
Sbjct: 158649 tttatactggcaatgaattt 158668

>emb|CR406022.1| Gallus gallus finished cDNA, clone ChEST640c1
          Length = 841

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 39  atggaaactggagataaaaataaa 62
           ||||||||||||| ||||||||||
Sbjct: 805 atggaaactggagttaaaaataaa 828

>gb|AC010450.6|AC010450 Homo sapiens chromosome 5 clone CTD-2242D16, complete sequence
          Length = 108916

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    aactggagataaaaataaaa 63
             ||||||||||||||||||||
Sbjct: 61778 aactggagataaaaataaaa 61797

>gb|AY064697.1| Gallus gallus toll-like receptor 4 (TLR4) gene, complete cds
          Length = 11698

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 314  gcagtttttcgagctgttgc 333
            ||||||||||||||||||||
Sbjct: 7397 gcagtttttcgagctgttgc 7378

>emb|AL390800.4|CNS06C7R Human chromosome 14 DNA sequence BAC R-254B15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169029

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     aactggagataaaaataaaa 63
              ||||||||||||||||||||
Sbjct: 147306 aactggagataaaaataaaa 147325

>gb|AC123718.9| Mus musculus chromosome 1, clone RP23-401A11, complete sequence
          Length = 225702

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    tggaaactggagataaaaataaaa 63
             ||||||||||||||||||| ||||
Sbjct: 30521 tggaaactggagataaaaaaaaaa 30544

>gb|AC125443.8| Mus musculus chromosome 1, clone RP24-493N12, complete sequence
          Length = 156248

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    tggaaactggagataaaaataaaa 63
             ||||||||||||||||||| ||||
Sbjct: 25347 tggaaactggagataaaaaaaaaa 25324

>dbj|AB101005.1| Gallus gallus MIP-3alpha mRNA for maacrophage inflammatory protein
           3alpha, complete cds
          Length = 883

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 39  atggaaactggagataaaaataaa 62
           ||||||||||||| ||||||||||
Sbjct: 822 atggaaactggagttaaaaataaa 845

>gb|AC131775.4| Mus musculus BAC clone RP24-313O6 from 6, complete sequence
          Length = 171720

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 249   atacagctttgcactcacactcaccttg 276
             ||||||||||| ||||||| ||||||||
Sbjct: 72358 atacagctttgtactcacagtcaccttg 72385

>emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chromosome 7, complete
             sequence
          Length = 165092

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   gttcagccataggtaatgaa 241
             ||||||||||||||||||||
Sbjct: 66739 gttcagccataggtaatgaa 66720


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,566,029
Number of Sequences: 3902068
Number of extensions: 3566029
Number of successful extensions: 76146
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76088
Number of HSP's gapped (non-prelim): 58
length of query: 353
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 331
effective length of database: 17,147,199,772
effective search space: 5675723124532
effective search space used: 5675723124532
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)