>TCB1_RABIT (P06333) T-cell receptor beta chain ANA 11|
          Length = 319

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
 Frame = +3

Query: 66  PQHQATIQNTTQIYDGYYNDSNVYPQT----SYYHITRLIHLLV-PYILAKSELCIHTHK 230
           P+H      T  +YDG+   S+ +  +     + H+    H     +I A + +CIHTH 
Sbjct: 28  PEHARPPTTTAMLYDGFLWPSHTHRHSYLLHPHTHVCTHTHTCTHTHIHASTHVCIHTH- 86

Query: 231 RRFPHNHN*LEQQTP*RPLSIHLTTTKTYCNNILGETPTRRGSNHPRQRATSA 389
             F H    L   T    L++    T+TY +      PT    + PR R  SA
Sbjct: 87  -TFTH----LCIHTLTHALTLTCAPTRTYAHT---RAPTHVHPHKPRPRQLSA 131

>DPH4_ASPFU (Q4WPF7) Diphthamide biosynthesis protein 4|
          Length = 199

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/83 (28%), Positives = 36/83 (43%)
 Frame = +3

Query: 138 PQTSYYHITRLIHLLVPYILAKSELCIHTHKRRFPHNHN*LEQQTP*RPLSIHLTTTKTY 317
           P+  YYHI  L     P  L+K +L I  HK    H+        P + +S+  T  +T+
Sbjct: 7   PRHDYYHILNLPFTTPPAALSKQQLKIAYHKALLKHH--------PDKAISVAATPARTH 58

Query: 318 CNNILGETPTRRGSNHPRQRATS 386
            +    +T T   S+  R   TS
Sbjct: 59  TH----DTKTAYRSSPDRNADTS 77

>NU5M_RHIUN (Q96069) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 606

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
 Frame = +3

Query: 102 IYDGYYNDSNVYPQT-------SYYHITRLIHLLVPYILAKSELCIHTHKRRFPHNHN*L 260
           I+ G++  +N+YP T       SY  +  LI  ++ + LA  EL + T+  +F H  N L
Sbjct: 462 IFAGFFISNNIYPTTTPKMTMPSYLKLMALIVTILGFALA-LELSLATYNLKFKHPSNPL 520

Query: 261 E 263
           +
Sbjct: 521 K 521

>PYRG_CAMJE (Q9PJ84) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 543

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = -2

Query: 358 EPRRVGVSPSMLLQYVLVVVKCIDRGLYGVCCSSQLWLCGNRRLCVCMQSSDLASIY 188
           E RR+G+SP M+   +    K +DR L      S    CG  + CV ++S D ASIY
Sbjct: 198 ELRRIGISPDMI---ICRSEKALDRDLKDKIAIS----CGVEKNCV-IESVDAASIY 246

>NU5M_HORSE (P48656) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 604

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = +3

Query: 102 IYDGYYNDSNVYPQT-------SYYHITRLIHLLVPYILAKSELCIHTHKRRFPHNHN 254
           I+ G++  +N+YP T       +Y  +T L   ++ + LA  EL + TH  +  H+ N
Sbjct: 460 IFAGFFISNNIYPTTVPEMTMPTYMKLTALAVTILGFTLA-LELSLMTHNLKLEHSTN 516

>RGF2_SCHPO (Q9UTR5) Rho1 guanine nucleotide exchange factor 2|
          Length = 1158

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 274 GVCCSSQLWLCGNRRLCVCMQSSDLASIYGTSK 176
           G+CC S  W  GN+ LC     +    ++GT K
Sbjct: 816 GICCQS--WFTGNKLLCAVAYDAGRKLLFGTYK 846

>STB3_YEAST (Q12427) Protein STB3 (SIN3-binding protein 3)|
          Length = 513

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 14/153 (9%)
 Frame = +2

Query: 14  SWLNVHTSSKF-DNNFVPAATPSNHPKHNTDL*WLLQRLKCLSPN*L-----LPYNTTDS 175
           S LN H  S +   N     TPSN+  ++      L++L   S         L  +   S
Sbjct: 295 SKLNTHQDSSYLSPNTTSTTTPSNNNSNSNQAKIDLEKLTATSEPTSRRASRLSVSKESS 354

Query: 176 LTSTIYT----C*IRTLHTYTQTSISTQPQLT*AANTVETPIYTFDNHQN-VLQQHTRRD 340
           + ST++       + T      TS+ST P+L    N    PI   D  ++ V  QH    
Sbjct: 355 IRSTLFPNKNYLIVTTNPNSKATSVSTSPKLEEQMNVSSNPIVLSDKEKHRVASQHLNG- 413

Query: 341 AYSAWFESSP---PESNQRMYPAPSSREEASLG 430
                 ESSP   P S+ + +      +  S+G
Sbjct: 414 ------ESSPQLVPHSHHQPHSDTDEEDWESIG 440

>ABCD1_HUMAN (P33897) ATP-binding cassette sub-family D member 1|
           (Adrenoleukodystrophy protein) (ALDP)
          Length = 745

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 334 ERRLLGVVRIIPAREQPAHVPRPVVQG-GGLAG 429
           +RRL  + +I+     PAHVP P  QG GGL G
Sbjct: 710 QRRLQELCQILGEAVAPAHVPAPSPQGPGGLQG 742

>NXLH2_BUNMU (Q9YGH9) Long neurotoxin homolog NTL2 precursor|
          Length = 89

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -2

Query: 331 SMLLQYVLVVVKCIDRGLYGVCCSSQLWLCGNRRLC-----VCMQSS 206
           ++LL  V+V++ C+D G    C +   + C N   C     +C++ S
Sbjct: 3   TLLLSLVVVIIVCLDLGYTMQCKTCSFYTCPNSETCPDGKNICVKRS 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,028,931
Number of Sequences: 219361
Number of extensions: 1589396
Number of successful extensions: 4861
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4857
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)