Clone Information

BLAST Search Result

Clone Name	rbags32h19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DQ175904.1\| Hordeum vulgare subsp. vulgare clone 28-52A-LB fl...	622	e-175
2	emb\|X86903.1\|TAFKBP70 T.aestivum mRNA for peptidylprolyl cis-tra...	490	e-135
3	ref\|XM_483423.1\| Oryza sativa (japonica cultivar-group), mRNA	190	4e-45
4	dbj\|AK103172.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	190	4e-45
5	gb\|AY104504.1\| Zea mays PCO127462 mRNA sequence	147	5e-32
6	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	113	7e-22
7	dbj\|AP003888.4\| Oryza sativa (japonica cultivar-group) genomic D...	113	7e-22
8	gb\|DQ175903.1\| Hordeum vulgare subsp. vulgare clone 28-52A-RB fl...	82	2e-12
9	ref\|XM_472023.1\| Oryza sativa (japonica cultivar-group), predic...	64	6e-07
10	gb\|AF140495.2\| Oryza sativa (japonica cultivar-group) FK506-bind...	64	6e-07
11	dbj\|AK100844.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	64	6e-07
12	gb\|BT012788.1\| Lycopersicon esculentum clone 113780F, mRNA sequence	52	0.002
13	emb\|CR788232.9\| Zebrafish DNA sequence from clone DKEY-283M16 in...	48	0.035
14	gb\|AC024817.1\| Caenorhabditis elegans cosmid Y54G2A, complete se...	44	0.54
15	ref\|XM_465763.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.54
16	dbj\|AK073233.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.54
17	gb\|AY112186.1\| Zea mays CL38095_1 mRNA sequence	44	0.54
18	gb\|AC104964.12\| Homo sapiens chromosome 8, clone RP11-981G7, com...	42	2.1
19	gb\|AC099564.2\| Homo sapiens chromosome 1 clone RP11-359A17, comp...	42	2.1
20	dbj\|AK173395.1\| Ciona intestinalis cDNA, clone:cilv028p09, full ...	42	2.1
21	gb\|AC157556.12\| Mus musculus chromosome 1, clone RP24-267A19, co...	40	8.5
22	gb\|AC146278.3\| Pan troglodytes BAC clone CH251-26J9 from X, comp...	40	8.5
23	gb\|AC171266.22\| Medicago truncatula clone mth2-14o4, complete se...	40	8.5
24	emb\|AL731897.12\| Human DNA sequence from clone RP11-284G10 on ch...	40	8.5
25	emb\|AL590664.8\| Human DNA sequence from clone RP11-66C24 on chro...	40	8.5
26	emb\|AL357312.8\| Human DNA sequence from clone RP11-390F10 on chr...	40	8.5
27	emb\|AL356277.18\| Human DNA sequence from clone RP11-554D15 on ch...	40	8.5
28	emb\|AL138798.10\| Human DNA sequence from clone RP1-82G18 on chro...	40	8.5
29	gb\|AC011601.21\| Homo sapiens 12 BAC RP11-498M15 (Roswell Park Ca...	40	8.5
30	emb\|BX927303.11\| Zebrafish DNA sequence from clone CH211-67L13 i...	40	8.5
31	emb\|AL669931.9\| Mouse DNA sequence from clone RP23-31D18 on chro...	40	8.5
32	gb\|AC005293.1\| Homo sapiens 12p13.3 PAC RPCI5-977L1 (Roswell Par...	40	8.5
33	gb\|AC073588.3\| Homo sapiens chromosome 10 clone RP11-96N16, comp...	40	8.5
34	gb\|AC118456.2\| Homo sapiens chromosome 5 clone CTD-2288B6, compl...	40	8.5
35	gb\|AC079264.23\| Homo sapiens Xp BAC RP11-315B16 (Roswell Park Ca...	40	8.5
36	gb\|AC008697.7\| Homo sapiens chromosome 5 clone CTB-70D3, complet...	40	8.5
37	gb\|AE010179.1\| Pyrococcus furiosus DSM 3638, section 54 of 173 o...	40	8.5
38	gb\|AC097066.2\| Homo sapiens chromosome 1 clone RP11-575B7, compl...	40	8.5
39	gb\|AC010240.7\| Homo sapiens chromosome 5 clone CTC-350I8, comple...	40	8.5
40	gb\|AC092333.2\| Homo sapiens chromosome 5 clone RP11-195A20, comp...	40	8.5
41	gb\|AC022463.5\| Homo sapiens BAC clone RP11-562N2 from 4, complet...	40	8.5
42	gb\|AC012642.5\| Homo sapiens chromosome 5 clone CTD-2287K1, compl...	40	8.5
43	gb\|AC092796.2\| Homo sapiens chromosome 3 clone RP11-11F9, comple...	40	8.5
44	gb\|AC008378.6\| Homo sapiens chromosome 5 clone CTC-209H22, compl...	40	8.5
45	gb\|AC010387.5\| Homo sapiens chromosome 5 clone CTD-2074D8, compl...	40	8.5
46	gb\|AC027684.3\| Homo sapiens chromosome 16 clone RP11-148F10, com...	40	8.5
47	gb\|AC092795.2\| Homo sapiens chromosome 3 clone RP11-9J18, comple...	40	8.5
48	emb\|AJ549502.2\|HSA549502 Homo sapiens peptidylarginine deiminase...	40	8.5
49	gb\|AE015928.1\| Bacteroides thetaiotaomicron VPI-5482, complete g...	40	8.5
50	gb\|AC159023.4\| Pan troglodytes BAC clone CH251-506L16 from chrom...	40	8.5
51	gb\|AC093515.4\| Homo sapiens chromosome 16 clone CTD-2535I10, com...	40	8.5
52	gb\|AC073612.17\| Homo sapiens 12 BAC RP11-293I14 (Roswell Park Ca...	40	8.5
53	gb\|AC159743.4\| Pan troglodytes BAC clone CH251-267D14 from chrom...	40	8.5
54	emb\|CR352309.9\| Zebrafish DNA sequence from clone DKEYP-72H1 in ...	40	8.5
55	dbj\|AP000999.6\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	8.5
56	dbj\|AP002853.4\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	8.5
57	dbj\|AP006293.2\| Homo sapiens genomic DNA, chromosome 9 clone:RP1...	40	8.5
58	gb\|CP000102.1\| Methanosphaera stadtmanae DSM 3091, complete genome	40	8.5
59	emb\|AL935193.9\| Zebrafish DNA sequence from clone CH211-209H11, ...	40	8.5
60	dbj\|AB020874.1\| Homo sapiens genomic DNA of 9q32 anti-oncogene o...	40	8.5

>gb|DQ175904.1| Hordeum vulgare subsp. vulgare clone 28-52A-LB flanking T-DNA
           insertion sequence
          Length = 699

 Score =  622 bits (314), Expect = e-175
 Identities = 314/314 (100%)
 Strand = Plus / Plus

                                                                       
Query: 116 gacgtttcaacgactacgaatgggcaacgataccttgcacaagggcgcgttaggaaagca 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  gacgtttcaacgactacgaatgggcaacgataccttgcacaagggcgcgttaggaaagca 100

                                                                       
Query: 176 cacaacacagatcctcaaggcaggaccacctattgcccggaacgcacaaactataatatg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 cacaacacagatcctcaaggcaggaccacctattgcccggaacgcacaaactataatatg 160

                                                                       
Query: 236 caaggtctaaacatgaacttttaaacaagaaaaattatcgcctggcaccctcaactgaaa 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 caaggtctaaacatgaacttttaaacaagaaaaattatcgcctggcaccctcaactgaaa 220

                                                                       
Query: 296 tttctctagtttttagcaactcccaagcatatgggtcttctaaccaaccagagctaagca 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tttctctagtttttagcaactcccaagcatatgggtcttctaaccaaccagagctaagca 280

                                                                       
Query: 356 gacaagctggcccttccttcagcacactccgggactccgatccttgctttgggtattgct 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gacaagctggcccttccttcagcacactccgggactccgatccttgctttgggtattgct 340

                         
Query: 416 ccagttcaagcttt 429
           ||||||||||||||
Sbjct: 341 ccagttcaagcttt 354



 Score =  242 bits (122), Expect = 1e-60
 Identities = 122/122 (100%)
 Strand = Plus / Plus

                                                                       
Query: 430 gctttcttctgctgaaggcctggtcatcttagaaaacatattgctgtagaatttggcgtc 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gctttcttctgctgaaggcctggtcatcttagaaaacatattgctgtagaatttggcgtc 487

                                                                       
Query: 490 cttcttgttgatttctttgatcttttccttcagggtcttgtatgtcaacttcacatccct 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cttcttgttgatttctttgatcttttccttcagggtcttgtatgtcaacttcacatccct 547

             
Query: 550 gt 551
           ||
Sbjct: 548 gt 549



 Score =  107 bits (54), Expect = 4e-20
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 547 cctgttttcaggatcgatttccagtgccttcttaatgtcaacctctgctaactc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cctgttttcaggatcgatttccagtgccttcttaatgtcaacctctgctaactc 699



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 120 tttcaacgactacgaatgggcaacgata 147
           ||||||||||||||||||||||||||||
Sbjct: 6   tttcaacgactacgaatgggcaacgata 33

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>emb|X86903.1|TAFKBP70 T.aestivum mRNA for peptidylprolyl cis-trans isomerase, FK506
          Length = 2027

 Score =  490 bits (247), Expect = e-135
 Identities = 380/419 (90%), Gaps = 9/419 (2%)
 Strand = Plus / Minus

                                                                        
Query: 211  cccggaacgcacaaactataatatgcaa-ggtctaaacatgaacttttaa--acaagaaa 267
            ||||||| ||||| |||||||||||||| |||||||||||| | | ||    ||||||||
Sbjct: 1999 cccggaaagcacacactataatatgcaaaggtctaaacatgcattgttcttgacaagaaa 1940

                                                                        
Query: 268  aattatcgcctggcaccctcaa--ctgaaatttctctagtttttagcaactcccaagcat 325
            || ||| |||||||| ||||||  ||||||||||||||||||||||||||||| ||||| 
Sbjct: 1939 aaatattgcctggcaacctcaaaactgaaatttctctagtttttagcaactcc-aagcac 1881

                                                                        
Query: 326  atgggtcttctaaccaacc---agagctaagcagacaagctggcccttccttcagcacac 382
            ||| ||  |||||||| ||   |||||| ||||||||||||||||||||| | ||| |||
Sbjct: 1880 atgcgtggtctaaccagcccatagagctgagcagacaagctggcccttccgtgagcgcac 1821

                                                                        
Query: 383  tccgggactccgatccttgctttgggtattgctccagttcaagctttgctttcttctgct 442
            ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1820 tccgggactcctatccttcctttgggtactgctccagttcaagctttgctttcttctgct 1761

                                                                        
Query: 443  gaaggcctggtcatcttagaaaacatattgctgtagaatttggcgtccttcttgttgatt 502
            |||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 1760 gaaggcttggtcatcttagagaacatattgctgtagaatttggcatccttcttgttgatt 1701

                                                                        
Query: 503  tctttgatcttttccttcagggtcttgtatgtcaacttcacatccctgttttcaggatcg 562
            || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 1700 tccttgatcttttccttcagagtcttgtatgtcaacttcacatccctgttttcaggatct 1641

                                                                       
Query: 563  atttccagtgccttcttaatgtcaacctctgctaactctaggtccgcaagctgagtgta 621
            ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1640 atttccaatgccttcttaatgtcgacctctgctaactctaggtccgcaagctgagtgta 1582

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>ref|XM_483423.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2100

 Score =  190 bits (96), Expect = 4e-45
 Identities = 174/200 (87%)
 Strand = Plus / Minus

                                                                        
Query: 413  gctccagttcaagctttgctttcttctgctgaaggcctggtcatcttagaaaacatattg 472
            ||||||| || ||||||||  ||||| ||||   || |||||||||| |  |||||||||
Sbjct: 1810 gctccagatccagctttgccgtcttcggctggctgcttggtcatcttggcgaacatattg 1751

                                                                        
Query: 473  ctgtagaatttggcgtccttcttgttgatttctttgatcttttccttcagggtcttgtat 532
            |||||||||||||| ||||||||||||   || |||| ||||||||| ||| ||||||||
Sbjct: 1750 ctgtagaatttggcatccttcttgttgtactccttgaccttttccttgaggttcttgtat 1691

                                                                        
Query: 533  gtcaacttcacatccctgttttcaggatcgatttccagtgccttcttaatgtcaacctct 592
            |||||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||||
Sbjct: 1690 gtcaacttcacatccctgttatcaggatcaatttcaagtgccttcttaatatccacctct 1631

                                
Query: 593  gctaactctaggtccgcaag 612
            |||||||||||||| |||||
Sbjct: 1630 gctaactctaggtcagcaag 1611

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>dbj|AK103172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121G16, full
            insert sequence
          Length = 2100

 Score =  190 bits (96), Expect = 4e-45
 Identities = 174/200 (87%)
 Strand = Plus / Minus

                                                                        
Query: 413  gctccagttcaagctttgctttcttctgctgaaggcctggtcatcttagaaaacatattg 472
            ||||||| || ||||||||  ||||| ||||   || |||||||||| |  |||||||||
Sbjct: 1810 gctccagatccagctttgccgtcttcggctggctgcttggtcatcttggcgaacatattg 1751

                                                                        
Query: 473  ctgtagaatttggcgtccttcttgttgatttctttgatcttttccttcagggtcttgtat 532
            |||||||||||||| ||||||||||||   || |||| ||||||||| ||| ||||||||
Sbjct: 1750 ctgtagaatttggcatccttcttgttgtactccttgaccttttccttgaggttcttgtat 1691

                                                                        
Query: 533  gtcaacttcacatccctgttttcaggatcgatttccagtgccttcttaatgtcaacctct 592
            |||||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||||
Sbjct: 1690 gtcaacttcacatccctgttatcaggatcaatttcaagtgccttcttaatatccacctct 1631

                                
Query: 593  gctaactctaggtccgcaag 612
            |||||||||||||| |||||
Sbjct: 1630 gctaactctaggtcagcaag 1611

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>gb|AY104504.1| Zea mays PCO127462 mRNA sequence
          Length = 2108

 Score =  147 bits (74), Expect = 5e-32
 Identities = 137/158 (86%)
 Strand = Plus / Minus

                                                                        
Query: 464  aacatattgctgtagaatttggcgtccttcttgttgatttctttgatcttttccttcagg 523
            ||||| ||||||||||||||||||||||||||||||   || |||||||| |||||||||
Sbjct: 1786 aacatgttgctgtagaatttggcgtccttcttgttgtactccttgatcttctccttcagg 1727

                                                                        
Query: 524  gtcttgtatgtcaacttcacatccctgttttcaggatcgatttccagtgccttcttaatg 583
             |||| |||  |||||| ||||||||||| ||||||||||||||||||||||| || || 
Sbjct: 1726 atcttatattccaacttgacatccctgttgtcaggatcgatttccagtgcctttttgata 1667

                                                  
Query: 584  tcaacctctgctaactctaggtccgcaagctgagtgta 621
            ||  ||||||||| ||||||||| ||||| ||| ||||
Sbjct: 1666 tcggcctctgctagctctaggtcagcaagttgaatgta 1629

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  113 bits (57), Expect = 7e-22
 Identities = 90/101 (89%)
 Strand = Plus / Minus

                                                                            
Query: 450      tggtcatcttagaaaacatattgctgtagaatttggcgtccttcttgttgatttctttga 509
                |||||||||| |  ||||||||||||||||||||||| ||||||||||||   || ||||
Sbjct: 26135344 tggtcatcttggcgaacatattgctgtagaatttggcatccttcttgttgtactccttga 26135285

                                                         
Query: 510      tcttttccttcagggtcttgtatgtcaacttcacatccctg 550
                 ||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 26135284 ccttttccttgaggttcttgtatgtcaacttcacatccctg 26135244



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                            
Query: 547      cctgttttcaggatcgatttccagtgccttcttaatgtcaacctctgctaactctaggtc 606
                |||||| |||||||| ||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 26135155 cctgttatcaggatcaatttcaagtgccttcttaatatccacctctgctaactctaggtc 26135096

                      
Query: 607      cgcaag 612
                 |||||
Sbjct: 26135095 agcaag 26135090

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>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1191_A10
          Length = 140643

 Score =  113 bits (57), Expect = 7e-22
 Identities = 90/101 (89%)
 Strand = Plus / Minus

                                                                         
Query: 450   tggtcatcttagaaaacatattgctgtagaatttggcgtccttcttgttgatttctttga 509
             |||||||||| |  ||||||||||||||||||||||| ||||||||||||   || ||||
Sbjct: 79275 tggtcatcttggcgaacatattgctgtagaatttggcatccttcttgttgtactccttga 79216

                                                      
Query: 510   tcttttccttcagggtcttgtatgtcaacttcacatccctg 550
              ||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 79215 ccttttccttgaggttcttgtatgtcaacttcacatccctg 79175



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                         
Query: 547   cctgttttcaggatcgatttccagtgccttcttaatgtcaacctctgctaactctaggtc 606
             |||||| |||||||| ||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 79086 cctgttatcaggatcaatttcaagtgccttcttaatatccacctctgctaactctaggtc 79027

                   
Query: 607   cgcaag 612
              |||||
Sbjct: 79026 agcaag 79021

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>gb|DQ175903.1| Hordeum vulgare subsp. vulgare clone 28-52A-RB flanking T-DNA
          insertion sequence
          Length = 338

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/65 (95%), Gaps = 3/65 (4%)
 Strand = Plus / Minus

                                                                      
Query: 1  ggatttgta-tctcggtttt-acttagttttcctctaatta-gggggcaactattttgcc 57
          ||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 78 ggatttgtaatctcggttttcacttagttttcctctaattaagggggcaactattttgcc 19

               
Query: 58 tcgtt 62
          |||||
Sbjct: 18 tcgtt 14

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>ref|XM_472023.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1758

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 95/116 (81%)
 Strand = Plus / Minus

                                                                        
Query: 464  aacatattgctgtagaatttggcgtccttcttgttgatttctttgatcttttccttcagg 523
            ||||| |||| |||||| ||||||||  ||||||||   || |||||||| |||||||  
Sbjct: 1667 aacatgttgccgtagaacttggcgtctctcttgttgtactccttgatcttctccttcaat 1608

                                                                    
Query: 524  gtcttgtatgtcaacttcacatccctgttttcaggatcgatttccagtgccttctt 579
            ||||| ||   || ||||||||||||||| |||||||| || |||||||| |||||
Sbjct: 1607 gtcttatacaccatcttcacatccctgttgtcaggatcaatctccagtgctttctt 1552

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>gb|AF140495.2| Oryza sativa (japonica cultivar-group) FK506-binding protein mRNA,
            complete cds
          Length = 2233

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 95/116 (81%)
 Strand = Plus / Minus

                                                                        
Query: 464  aacatattgctgtagaatttggcgtccttcttgttgatttctttgatcttttccttcagg 523
            ||||| |||| |||||| ||||||||  ||||||||   || |||||||| |||||||  
Sbjct: 1750 aacatgttgccgtagaacttggcgtctctcttgttgtactccttgatcttctccttcaat 1691

                                                                    
Query: 524  gtcttgtatgtcaacttcacatccctgttttcaggatcgatttccagtgccttctt 579
            ||||| ||   || ||||||||||||||| |||||||| || |||||||| |||||
Sbjct: 1690 gtcttatacaccatcttcacatccctgttgtcaggatcaatctccagtgctttctt 1635

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>dbj|AK100844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123G09, full
            insert sequence
          Length = 2162

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 95/116 (81%)
 Strand = Plus / Minus

                                                                        
Query: 464  aacatattgctgtagaatttggcgtccttcttgttgatttctttgatcttttccttcagg 523
            ||||| |||| |||||| ||||||||  ||||||||   || |||||||| |||||||  
Sbjct: 1753 aacatgttgccgtagaacttggcgtctctcttgttgtactccttgatcttctccttcaat 1694

                                                                    
Query: 524  gtcttgtatgtcaacttcacatccctgttttcaggatcgatttccagtgccttctt 579
            ||||| ||   || ||||||||||||||| |||||||| || |||||||| |||||
Sbjct: 1693 gtcttatacaccatcttcacatccctgttgtcaggatcaatctccagtgctttctt 1638

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>gb|BT012788.1| Lycopersicon esculentum clone 113780F, mRNA sequence
          Length = 2264

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 538  cttcacatccctgttttcaggatcgatttccagtgccttcttaatgtcaa 587
            ||||||||||||||| |||||||| || || || || |||||||||||||
Sbjct: 1772 cttcacatccctgttgtcaggatcaatctcaagagctttcttaatgtcaa 1723

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>emb|CR788232.9| Zebrafish DNA sequence from clone DKEY-283M16 in linkage group 2,
             complete sequence
          Length = 70979

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 397   ccttgctttgggtattgctccagt 420
             ||||||||||||||||||||||||
Sbjct: 44745 ccttgctttgggtattgctccagt 44722

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>gb|AC024817.1| Caenorhabditis elegans cosmid Y54G2A, complete sequence
          Length = 286680

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 8     tatctcggttttacttagtttt 29
             ||||||||||||||||||||||
Sbjct: 72175 tatctcggttttacttagtttt 72154

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>ref|XM_465763.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2341

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 538  cttcacatccctgttttcaggatcgatttccagtgccttctt 579
            ||||||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 1795 cttcacatccctgttgtctggatctatttctagtgctttctt 1754

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>dbj|AK073233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023H01, full
            insert sequence
          Length = 2341

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 538  cttcacatccctgttttcaggatcgatttccagtgccttctt 579
            ||||||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 1795 cttcacatccctgttgtctggatctatttctagtgctttctt 1754

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>gb|AY112186.1| Zea mays CL38095_1 mRNA sequence
          Length = 578

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 538 cttcacatccctgttttcaggatcgatttc 567
           ||||||||||||||| |||||||| |||||
Sbjct: 499 cttcacatccctgttgtcaggatctatttc 528

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>gb|AC104964.12| Homo sapiens chromosome 8, clone RP11-981G7, complete sequence
          Length = 212226

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 381   actccgggactccgatccttgcttt 405
             |||| ||||||||||||||||||||
Sbjct: 83021 actcagggactccgatccttgcttt 83045

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>gb|AC099564.2| Homo sapiens chromosome 1 clone RP11-359A17, complete sequence
          Length = 189509

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 500   atttctttgatcttttccttc 520
             |||||||||||||||||||||
Sbjct: 61555 atttctttgatcttttccttc 61575

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>dbj|AK173395.1| Ciona intestinalis cDNA, clone:cilv028p09, full insert sequence
          Length = 2192

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 501 tttctttgatcttttccttca 521
           |||||||||||||||||||||
Sbjct: 916 tttctttgatcttttccttca 896

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>gb|AC157556.12| Mus musculus chromosome 1, clone RP24-267A19, complete sequence
          Length = 198267

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 492   tcttgttgatttctttgatc 511
             ||||||||||||||||||||
Sbjct: 56503 tcttgttgatttctttgatc 56522

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>gb|AC146278.3| Pan troglodytes BAC clone CH251-26J9 from X, complete sequence
          Length = 199900

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   aacttcacatccctgttttc 555
             ||||||||||||||||||||
Sbjct: 26264 aacttcacatccctgttttc 26245

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>gb|AC171266.22| Medicago truncatula clone mth2-14o4, complete sequence
          Length = 137052

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 511   cttttccttcagggtcttgtatgtcaacttcacatccctg 550
             |||||||||||  ||||||||   ||||||||||||||||
Sbjct: 43132 cttttccttcaaagtcttgtactccaacttcacatccctg 43093

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>emb|AL731897.12| Human DNA sequence from clone RP11-284G10 on chromosome 9 Contains a
              novel gene, complete sequence
          Length = 125196

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 501    tttctttgatcttttccttcagggtctt 528
              |||||||||||| ||| |||||||||||
Sbjct: 115745 tttctttgatctcttctttcagggtctt 115772

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>emb|AL590664.8| Human DNA sequence from clone RP11-66C24 on chromosome 9, complete
            sequence
          Length = 68217

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 536  aacttcacatccctgttttc 555
            ||||||||||||||||||||
Sbjct: 8991 aacttcacatccctgttttc 9010

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>emb|AL357312.8| Human DNA sequence from clone RP11-390F10 on chromosome Xq21.2-22.1
            Contains a eukaryotic translation elongation factor 1
            alpha 1 (EEF1A1) pseudogene and a high-mobility group box
            1 (HMGB1) pseudogene, complete sequence
          Length = 187469

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 536  aacttcacatccctgttttc 555
            ||||||||||||||||||||
Sbjct: 4752 aacttcacatccctgttttc 4733

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>emb|AL356277.18| Human DNA sequence from clone RP11-554D15 on chromosome 6 Contains a
             pseudogene similar to part of ubiquinol-cytochrome c
             reductase core protein II (UQCRC2), a novel gene and the
             3' ends of two novel genes, complete sequence
          Length = 181891

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   aacttcacatccctgttttc 555
             ||||||||||||||||||||
Sbjct: 46651 aacttcacatccctgttttc 46632

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>emb|AL138798.10| Human DNA sequence from clone RP1-82G18 on chromosome 1p36.12-36.31,
            complete sequence
          Length = 8465

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 496  gttgatttctttgatcttttccttcagg 523
            ||||| || |||||||||||||||||||
Sbjct: 6300 gttgaattttttgatcttttccttcagg 6327

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>gb|AC011601.21| Homo sapiens 12 BAC RP11-498M15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 4301

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 536  aacttcacatccctgttttc 555
            ||||||||||||||||||||
Sbjct: 2492 aacttcacatccctgttttc 2511

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>emb|BX927303.11| Zebrafish DNA sequence from clone CH211-67L13 in linkage group 6,
              complete sequence
          Length = 163380

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    aaacatgaacttttaaacaa 263
              ||||||||||||||||||||
Sbjct: 101874 aaacatgaacttttaaacaa 101893

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>emb|AL669931.9| Mouse DNA sequence from clone RP23-31D18 on chromosome 11 Contains the
             Stc2 gene for stanniocalcin 2 and three CpG islands,
             complete sequence
          Length = 252980

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   gacaagctggcccttccttc 375
             ||||||||||||||||||||
Sbjct: 84631 gacaagctggcccttccttc 84612

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>gb|AC005293.1| Homo sapiens 12p13.3 PAC RPCI5-977L1 (Roswell Park Cancer Institute
             Human PAC library) complete sequence
          Length = 143334

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 536   aacttcacatccctgttttc 555
             ||||||||||||||||||||
Sbjct: 31579 aacttcacatccctgttttc 31598

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>gb|AC073588.3| Homo sapiens chromosome 10 clone RP11-96N16, complete sequence
          Length = 166120

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 536    aacttcacatccctgttttc 555
              ||||||||||||||||||||
Sbjct: 122059 aacttcacatccctgttttc 122078

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>gb|AC118456.2| Homo sapiens chromosome 5 clone CTD-2288B6, complete sequence
          Length = 121822

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 536    aacttcacatccctgttttc 555
              ||||||||||||||||||||
Sbjct: 121624 aacttcacatccctgttttc 121605

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>gb|AC079264.23| Homo sapiens Xp BAC RP11-315B16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 194851

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 536    aacttcacatccctgttttc 555
              ||||||||||||||||||||
Sbjct: 187814 aacttcacatccctgttttc 187795

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>gb|AC008697.7| Homo sapiens chromosome 5 clone CTB-70D3, complete sequence
          Length = 120994

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   aacttcacatccctgttttc 555
             ||||||||||||||||||||
Sbjct: 20489 aacttcacatccctgttttc 20470

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>gb|AE010179.1| Pyrococcus furiosus DSM 3638, section 54 of 173 of the complete genome
          Length = 13617

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 350   taagcagacaagctggcccttcct 373
             ||||||||||||||||| ||||||
Sbjct: 11057 taagcagacaagctggctcttcct 11080

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>gb|AC097066.2| Homo sapiens chromosome 1 clone RP11-575B7, complete sequence
          Length = 168686

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  tctaaacatgaacttttaaa 260
            ||||||||||||||||||||
Sbjct: 3493 tctaaacatgaacttttaaa 3474

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>gb|AC010240.7| Homo sapiens chromosome 5 clone CTC-350I8, complete sequence
          Length = 112646

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   aacttcacatccctgttttc 555
             ||||||||||||||||||||
Sbjct: 59792 aacttcacatccctgttttc 59773

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>gb|AC092333.2| Homo sapiens chromosome 5 clone RP11-195A20, complete sequence
          Length = 157402

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 536    aacttcacatccctgttttc 555
              ||||||||||||||||||||
Sbjct: 105197 aacttcacatccctgttttc 105178

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>gb|AC022463.5| Homo sapiens BAC clone RP11-562N2 from 4, complete sequence
          Length = 190080

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 416   ccagttcaagctttgctttcttct 439
             |||||||||| |||||||||||||
Sbjct: 78459 ccagttcaagttttgctttcttct 78482

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>gb|AC012642.5| Homo sapiens chromosome 5 clone CTD-2287K1, complete sequence
          Length = 159956

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 536    aacttcacatccctgttttc 555
              ||||||||||||||||||||
Sbjct: 101544 aacttcacatccctgttttc 101563

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>gb|AC092796.2| Homo sapiens chromosome 3 clone RP11-11F9, complete sequence
          Length = 151219

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 536  aacttcacatccctgttttc 555
            ||||||||||||||||||||
Sbjct: 9735 aacttcacatccctgttttc 9716

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>gb|AC008378.6| Homo sapiens chromosome 5 clone CTC-209H22, complete sequence
          Length = 161267

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 536    aacttcacatccctgttttc 555
              ||||||||||||||||||||
Sbjct: 148788 aacttcacatccctgttttc 148769

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>gb|AC010387.5| Homo sapiens chromosome 5 clone CTD-2074D8, complete sequence
          Length = 173414

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   aacttcacatccctgttttc 555
             ||||||||||||||||||||
Sbjct: 25811 aacttcacatccctgttttc 25792

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>gb|AC027684.3| Homo sapiens chromosome 16 clone RP11-148F10, complete sequence
          Length = 187520

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 340   caaccagagctaagcagacaagct 363
             |||||||||||||| |||||||||
Sbjct: 39325 caaccagagctaagtagacaagct 39302

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>gb|AC092795.2| Homo sapiens chromosome 3 clone RP11-9J18, complete sequence
          Length = 142517

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 536    aacttcacatccctgttttc 555
              ||||||||||||||||||||
Sbjct: 120265 aacttcacatccctgttttc 120246

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>emb|AJ549502.2|HSA549502 Homo sapiens peptidylarginine deiminase gene locus (PADI12346 genes)
          Length = 355060

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 496    gttgatttctttgatcttttccttcagg 523
              ||||| || |||||||||||||||||||
Sbjct: 270699 gttgaattttttgatcttttccttcagg 270726

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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 251     aacttttaaacaagaaaaat 270
               ||||||||||||||||||||
Sbjct: 1920110 aacttttaaacaagaaaaat 1920129

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>gb|AC159023.4| Pan troglodytes BAC clone CH251-506L16 from chromosome unknown, complete
              sequence
          Length = 180977

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 536    aacttcacatccctgttttc 555
              ||||||||||||||||||||
Sbjct: 140571 aacttcacatccctgttttc 140590

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>gb|AC093515.4| Homo sapiens chromosome 16 clone CTD-2535I10, complete sequence
          Length = 184182

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 340    caaccagagctaagcagacaagct 363
              |||||||||||||| |||||||||
Sbjct: 102792 caaccagagctaagtagacaagct 102769

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>gb|AC073612.17| Homo sapiens 12 BAC RP11-293I14 (Roswell Park Cancer Institute
           Human BAC Library) complete sequence
          Length = 54262

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 536 aacttcacatccctgttttc 555
           ||||||||||||||||||||
Sbjct: 293 aacttcacatccctgttttc 312

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>gb|AC159743.4| Pan troglodytes BAC clone CH251-267D14 from chromosome unknown, complete
              sequence
          Length = 178837

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 536    aacttcacatccctgttttc 555
              ||||||||||||||||||||
Sbjct: 132971 aacttcacatccctgttttc 132952

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>emb|CR352309.9| Zebrafish DNA sequence from clone DKEYP-72H1 in linkage group 20,
              complete sequence
          Length = 142300

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    aaacatgaacttttaaacaa 263
              ||||||||||||||||||||
Sbjct: 128916 aaacatgaacttttaaacaa 128897

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>dbj|AP000999.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-667I23, complete
              sequence
          Length = 189892

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 536    aacttcacatccctgttttc 555
              ||||||||||||||||||||
Sbjct: 128667 aacttcacatccctgttttc 128648

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>dbj|AP002853.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-46K15, complete
             sequence
          Length = 177463

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   aacttcacatccctgttttc 555
             ||||||||||||||||||||
Sbjct: 46239 aacttcacatccctgttttc 46220

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>dbj|AP006293.2| Homo sapiens genomic DNA, chromosome 9 clone:RP11-818I20, complete
             sequence
          Length = 155000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 501   tttctttgatcttttccttcagggtctt 528
             |||||||||||| ||| |||||||||||
Sbjct: 34293 tttctttgatctcttctttcagggtctt 34320

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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 16      ttttacttagttttcctcta 35
               ||||||||||||||||||||
Sbjct: 1017299 ttttacttagttttcctcta 1017318

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>emb|AL935193.9| Zebrafish DNA sequence from clone CH211-209H11, complete sequence
          Length = 208059

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    ttttaaacaagaaaaattat 273
              ||||||||||||||||||||
Sbjct: 201208 ttttaaacaagaaaaattat 201227

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>dbj|AB020874.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium
             cancer , segment 6/10
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 501   tttctttgatcttttccttcagggtctt 528
             |||||||||||| ||| |||||||||||
Sbjct: 39314 tttctttgatctcttctttcagggtctt 39341


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,766,272
Number of Sequences: 3902068
Number of extensions: 5766272
Number of successful extensions: 119874
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119674
Number of HSP's gapped (non-prelim): 197
length of query: 622
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 599
effective length of database: 17,143,297,704
effective search space: 10268835324696
effective search space used: 10268835324696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result