ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32h16 |
|---|---|
| Clone Library Name | barley_pub |
>NECP1_MOUSE (Q9CR95) Adaptin ear-binding coat-associated protein 1 (NECAP-1)| Length = 275 Score = 43.1 bits (100), Expect = 7e-04 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Frame = -2 Query: 660 EAYDFQAALHDHMKYLNKKKTAEEMVQHYENTSSVDYSLKEGETLVLQIKN---KESGSK 490 +A+DF +L DH K++ ++ + Q +N +D KEG+T+ L I N K+ G+ Sbjct: 115 DAFDFNVSLQDHFKWVKQETEISKESQEMDNRPKLDLGFKEGQTIKLSIGNITAKKGGAS 174 Query: 489 TKSAFFEQGLNKL 451 A GL+ L Sbjct: 175 KPRASGTGGLSLL 187
>NECP1_RAT (P69682) Adaptin ear-binding coat-associated protein 1 (NECAP-1)| Length = 277 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Frame = -2 Query: 660 EAYDFQAALHDHMKYLNKKKTAEEMVQHYENTSSVDYSLKEGETLVLQIKN---KESGSK 490 +A+DF +L DH K++ ++ + Q ++ +D KEG+T+ L I N K+ G+ Sbjct: 115 DAFDFNVSLQDHFKWVKQETEISKESQEMDSRPKLDLGFKEGQTIKLSIGNITAKKGGTS 174 Query: 489 TKSAFFEQGLNKL 451 A GL+ L Sbjct: 175 KPRASGTGGLSLL 187
>NECP1_PONPY (Q5R630) Adaptin ear-binding coat-associated protein 1 (NECAP-1)| Length = 275 Score = 40.8 bits (94), Expect = 0.004 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Frame = -2 Query: 660 EAYDFQAALHDHMKYLNKKKTAEEMVQHYENTSSVDYSLKEGETLVL---QIKNKESG-S 493 +A+DF +L DH K++ ++ + Q + +D KEG+T+ L I NKE G S Sbjct: 115 DAFDFNVSLQDHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLSIGNITNKEGGAS 174 Query: 492 KTKSA 478 K ++A Sbjct: 175 KPRTA 179
>NECP2_HUMAN (Q9NVZ3) Adaptin ear-binding coat-associated protein 2 (NECAP-2)| Length = 263 Score = 39.7 bits (91), Expect = 0.008 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = -2 Query: 660 EAYDFQAALHDHMKYLNKKKTAEEMVQHYENTSSVDYSLKEGETLVLQIKN 508 +A+DF AL DH K++ ++ + Q+ + +D KEG+T+ L I N Sbjct: 114 DAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIAN 164
>NECP1_HUMAN (Q8NC96) Adaptin ear-binding coat-associated protein 1 (NECAP-1)| Length = 275 Score = 39.3 bits (90), Expect = 0.011 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Frame = -2 Query: 660 EAYDFQAALHDHMKYLNKKKTAEEMVQHYENTSSVDYSLKEGETLVL---QIKNKESG-S 493 +A+DF +L DH K++ ++ + Q + +D KEG+T+ L I NK+ G S Sbjct: 115 DAFDFNVSLQDHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLCIGNITNKKGGAS 174 Query: 492 KTKSA 478 K ++A Sbjct: 175 KPRTA 179
>NECP2_RAT (Q6P756) Adaptin ear-binding coat-associated protein 2 (NECAP-2)| Length = 263 Score = 38.9 bits (89), Expect = 0.014 Identities = 16/51 (31%), Positives = 29/51 (56%) Frame = -2 Query: 660 EAYDFQAALHDHMKYLNKKKTAEEMVQHYENTSSVDYSLKEGETLVLQIKN 508 +A+DF AL DH K++ ++ + Q+ + +D KEG+T+ + I N Sbjct: 114 DAFDFNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKEGQTIKINIAN 164
>NECP2_MOUSE (Q9D1J1) Adaptin ear-binding coat-associated protein 2 (NECAP-2)| Length = 266 Score = 38.5 bits (88), Expect = 0.018 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Frame = -2 Query: 660 EAYDFQAALHDHMKYLNKKKTAEEMVQHYENTSSVDYSLKEGETLVLQIKN---KESGSK 490 +A+DF AL DH K++ ++ + Q+ + +D K+G+T+ + I N KE + Sbjct: 114 DAFDFNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKDGQTIKINIANMRKKEGAAG 173 Query: 489 TKSA 478 T A Sbjct: 174 TPRA 177
>GYRB_THEMA (P77993) DNA gyrase subunit B (EC 5.99.1.3) (Topoisomerase II| subunit B) Length = 636 Score = 32.3 bits (72), Expect = 1.3 Identities = 30/115 (26%), Positives = 51/115 (44%) Frame = -2 Query: 660 EAYDFQAALHDHMKYLNKKKTAEEMVQHYENTSSVDYSLKEGETLVLQIKNKESGSKTKS 481 + + F + +++KYLN+ K A V H + T V E E +V E + Sbjct: 211 KTFKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKNGEDEVIV------EIAFQYTD 264 Query: 480 AFFEQGLNKLSFNDKANSKEGTVSLKTPTTSTLTRVSN*FWSCHVPFQSRISFPG 316 ++ E + +SF + + +G + T STLTR+ N + H + SF G Sbjct: 265 SYSE---DIVSFANTIKTVDGGTHV-TAFKSTLTRLMNEYGKKHNFLKKDDSFQG 315
>SPB1_KLULA (Q6CV12) AdoMet-dependent rRNA methyltransferase SPB1 (EC 2.1.1.-)| (2'-O-ribose RNA methyltransferase) (S-adenosyl-L-methionine-dependent methyltransferase) Length = 833 Score = 31.2 bits (69), Expect = 2.9 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = -2 Query: 606 KKTAEEMVQHYENTSSVDYSLKEGETLVLQIKNKESGSKTKSAFFEQGLNKLSFNDKANS 427 K+T +E +++ +D + E TL Q+ G KTK E+G N+ SF D N Sbjct: 637 KRTKQE-----KHSKDIDIATVEAMTLAHQLA---LGHKTKHDLIEEGFNRYSFRDMENL 688 Query: 426 KE 421 E Sbjct: 689 PE 690
>GYRB_ACIG3 (Q44270) DNA gyrase subunit B (EC 5.99.1.3) (Fragment)| Length = 388 Score = 31.2 bits (69), Expect = 2.9 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 13/91 (14%) Frame = -2 Query: 654 YDFQAALHDHMKYLNKKKTAEEMVQHY----ENTSSVDYSLKEGET-------LVLQIKN 508 YD++ L + +KY+N+ KT + H+ EN V+ +L+ E+ I Sbjct: 110 YDYEGGLSEFVKYINEGKTHLNEIFHFTADTENGIGVEVALQWNESYQENVRCFTNNIPQ 169 Query: 507 KESGSKTKS--AFFEQGLNKLSFNDKANSKE 421 K+ G+ A +GLN+ N+ KE Sbjct: 170 KDGGTHLAGFRAALTRGLNQYLENENILKKE 200
>GLB_TETTH (Q03459) Myoglobin (Hemoglobin)| Length = 121 Score = 30.4 bits (67), Expect = 4.9 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = -2 Query: 645 QAALHDHMKYLNKKKTAEEMVQHYENTSSVDYSLKEGETLVLQIKNKESGSKTKS-AFFE 469 QAA+H + KK A++ V+HY +++++ K+ E + + + K K+ A Sbjct: 14 QAAMHAAVPLFYKKVLADDRVKHYFKNTNMEHQAKQQEDFLTMLLGGPNHYKGKNMAEAH 73 Query: 468 QGLN 457 +G+N Sbjct: 74 KGMN 77
>ATG2_DEBHA (Q6BTX0) Autophagy-related protein 2| Length = 1903 Score = 30.4 bits (67), Expect = 4.9 Identities = 19/72 (26%), Positives = 33/72 (45%) Frame = -2 Query: 624 MKYLNKKKTAEEMVQHYENTSSVDYSLKEGETLVLQIKNKESGSKTKSAFFEQGLNKLSF 445 MK + +T E + +N+ + D ++ ++ GS T S E G NKLS Sbjct: 1130 MKSASHSETFENLTISRKNSDANDINI---------VEEYYDGSHTSSQSLENGFNKLSI 1180 Query: 444 NDKANSKEGTVS 409 ++ N+K+ S Sbjct: 1181 SESDNAKDDASS 1192
>SN1L2_PONPY (Q5REX1) Serine/threonine-protein kinase SNF1-like kinase 2 (EC| 2.7.11.1) Length = 925 Score = 30.0 bits (66), Expect = 6.5 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 14/112 (12%) Frame = -1 Query: 472 RARPEQAIVQ*QSKQQGGHSVPQNSHHLHPHPCLQLILELPCPLSKQNFLPRNKQAPAIL 293 R + ++ +Q QS+ Q + Q + +P P QL PL +Q P ++QAP Sbjct: 716 RLQQKRLFLQKQSQLQAYFNQMQIAESSYPQPSQQL------PLPRQETPPPSQQAPPFS 769 Query: 292 KTSPL----------LSKQNFLHKKHWM----IPSKLKQRLPLVTNQLQQRR 179 T PL + FL + M +PS R + QLQQ++ Sbjct: 770 LTQPLSPVLEPSSEQMQYSPFLSQYQEMQLQPLPSTSSPRAAPLPTQLQQQQ 821
>GYRB_ACIHA (Q44065) DNA gyrase subunit B (EC 5.99.1.3) (Fragment)| Length = 388 Score = 30.0 bits (66), Expect = 6.5 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 13/94 (13%) Frame = -2 Query: 654 YDFQAALHDHMKYLNKKKTAEEMVQHY----ENTSSVDYSLKEGET-------LVLQIKN 508 YD++ L + ++Y+N+ KT + H+ +N SV+ +L+ ++ I Sbjct: 110 YDYEGGLSEFVRYINEGKTHLNEIFHFTTDADNGISVEVALQWNDSYQENVRCFTNNIPQ 169 Query: 507 KESGSKTKS--AFFEQGLNKLSFNDKANSKEGTV 412 K+ G+ A +GLN N+ KE V Sbjct: 170 KDGGTHLAGFRAALTRGLNSYMENENLLKKEKVV 203
>GYRB_ACIGB (Q44274) DNA gyrase subunit B (EC 5.99.1.3) (Fragment)| Length = 389 Score = 30.0 bits (66), Expect = 6.5 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 13/91 (14%) Frame = -2 Query: 654 YDFQAALHDHMKYLNKKKTAEEMVQHY----ENTSSVDYSLKEGET-------LVLQIKN 508 +D++ L + +KY+N+ KT + H+ EN V+ +L+ +T I Sbjct: 110 FDYEGGLSEFVKYINQGKTHLNEIFHFTTQAENGIGVEVALQWNDTYQENVRCFTNNIPQ 169 Query: 507 KESGSKTKS--AFFEQGLNKLSFNDKANSKE 421 K+ G+ A +GLN N+ KE Sbjct: 170 KDGGTHLAGFRAALTRGLNSYMENENLLKKE 200
>GYRB_ACIJO (Q44081) DNA gyrase subunit B (EC 5.99.1.3) (Fragment)| Length = 389 Score = 29.6 bits (65), Expect = 8.4 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 13/91 (14%) Frame = -2 Query: 654 YDFQAALHDHMKYLNKKKTAEEMVQHY----ENTSSVDYSLKEGET-------LVLQIKN 508 +D++ L + +KY+N+ KT + H+ EN V+ +L+ +T I Sbjct: 110 FDYEGGLSEFVKYINQGKTHLNDIFHFTVQAENGIGVEVALQWNDTYQENVRCFTNNIPQ 169 Query: 507 KESGSKTKS--AFFEQGLNKLSFNDKANSKE 421 K+ G+ A +GLN N+ KE Sbjct: 170 KDGGTHLAGFRAALTRGLNSYMENENLLKKE 200
>PRE1_STAAU (P03857) Plasmid recombination enzyme type 1 (Plasmid recombinase)| (Mobilization protein) Length = 403 Score = 29.6 bits (65), Expect = 8.4 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 3/98 (3%) Frame = -2 Query: 600 TAEEMVQHYENTSSVDYSLKEGETLVLQIKNKESGSKTKSAFFEQG--LNKLS-FNDKAN 430 +AE +V YEN S DY + E + KE + K + E+ +NKL ND N Sbjct: 269 SAERIVDDYENIKSTDYYTENQELKKRRESLKEVVNTWKEGYHEKSKEVNKLKRENDSLN 328 Query: 429 SKEGTVSLKTPTTSTLTRVSN*FWSCHVPFQSRISFPG 316 + +T TL R +R +FPG Sbjct: 329 EQLNVSEKFQASTVTLYRA------------ARANFPG 354 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,376,423 Number of Sequences: 219361 Number of extensions: 1619366 Number of successful extensions: 4982 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4828 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4974 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
