ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32h15 |
|---|---|
| Clone Library Name | barley_pub |
>AATC_ORYSA (P37833) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) Length = 407 Score = 51.2 bits (121), Expect = 6e-07 Identities = 24/27 (88%), Positives = 25/27 (92%) Frame = -2 Query: 330 RISMXGLSSRTVPHLADAIHAAVTKLK 250 RISM GLS RT+PHLADAIHAAVTKLK Sbjct: 381 RISMAGLSGRTIPHLADAIHAAVTKLK 407
>AATC_DAUCA (P28734) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) Length = 405 Score = 47.8 bits (112), Expect = 7e-06 Identities = 23/24 (95%), Positives = 23/24 (95%) Frame = -2 Query: 330 RISMXGLSSRTVPHLADAIHAAVT 259 RISM GLSSRTVPHLADAIHAAVT Sbjct: 379 RISMAGLSSRTVPHLADAIHAAVT 402
>AAT2_ARATH (P46645) Aspartate aminotransferase, cytoplasmic isozyme 1 (EC| 2.6.1.1) (Transaminase A) Length = 405 Score = 47.8 bits (112), Expect = 7e-06 Identities = 22/26 (84%), Positives = 25/26 (96%) Frame = -2 Query: 330 RISMXGLSSRTVPHLADAIHAAVTKL 253 RISM GLSS+TVPHLADA+HAAVT+L Sbjct: 379 RISMAGLSSKTVPHLADAMHAAVTRL 404
>AAT3_ARATH (P46644) Aspartate aminotransferase, chloroplast precursor (EC| 2.6.1.1) (Transaminase A) Length = 449 Score = 47.0 bits (110), Expect = 1e-05 Identities = 22/25 (88%), Positives = 23/25 (92%) Frame = -2 Query: 330 RISMXGLSSRTVPHLADAIHAAVTK 256 RISM GLSS+TVPHLADAIHA VTK Sbjct: 423 RISMAGLSSKTVPHLADAIHAVVTK 447
>AAT1_MEDSA (P28011) Aspartate aminotransferase 1 (EC 2.6.1.1) (Transaminase A)| Length = 418 Score = 43.5 bits (101), Expect = 1e-04 Identities = 20/26 (76%), Positives = 23/26 (88%) Frame = -2 Query: 330 RISMXGLSSRTVPHLADAIHAAVTKL 253 RISM GLSS+TVPHLA AIHA VT++ Sbjct: 392 RISMAGLSSKTVPHLAHAIHAVVTRV 417
>AAT4_ARATH (P46646) Aspartate aminotransferase, cytoplasmic isozyme 2 (EC| 2.6.1.1) (Transaminase A) Length = 403 Score = 41.2 bits (95), Expect = 7e-04 Identities = 19/26 (73%), Positives = 22/26 (84%) Frame = -2 Query: 330 RISMXGLSSRTVPHLADAIHAAVTKL 253 RISM LSS+TVP LADAIHA VT++ Sbjct: 377 RISMASLSSKTVPQLADAIHAVVTRI 402
>INSRR_RAT (Q64716) Insulin receptor-related protein precursor (EC 2.7.10.1)| (IRR) (IR-related receptor) (Fragments) Length = 581 Score = 31.2 bits (69), Expect = 0.68 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 12/54 (22%) Frame = -1 Query: 298 CTPSC----------RCHTC--CGYKTEVNDNMATPFRNXXXNCLQQCPKGSTR 173 C P+C RC T CG+ EV + AT F +CL QCP G TR Sbjct: 258 CLPACPPGTYQYESWRCVTAELCGHLREVPGH-ATAFGIYEGSCLAQCPPGFTR 310
>HEMA_IACKS (P09345) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] Length = 564 Score = 30.8 bits (68), Expect = 0.88 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -1 Query: 283 RCHTCCGYKTEVNDNMATPFRNXXXNCLQQCPK--GSTRGVLLAELRNLPCR 134 +C T G E+N +M PF N + + +CPK S R VL LRN+P R Sbjct: 293 KCQTPVG---EINSSM--PFHNIHPHTIGECPKYVKSDRLVLATGLRNVPQR 339
>AATC_PIG (P00503) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 1) Length = 412 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/27 (44%), Positives = 22/27 (81%) Frame = -2 Query: 330 RISMXGLSSRTVPHLADAIHAAVTKLK 250 RI+M GL+++ + ++A +IH AVTK++ Sbjct: 386 RINMCGLTTKNLDYVATSIHEAVTKIQ 412
>AATC_MOUSE (P05201) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 1) Length = 412 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/27 (44%), Positives = 22/27 (81%) Frame = -2 Query: 330 RISMXGLSSRTVPHLADAIHAAVTKLK 250 RI+M GL+++ + ++A +IH AVTK++ Sbjct: 386 RINMCGLTTKNLDYVATSIHEAVTKIQ 412
>AATC_CHICK (P00504) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 1) Length = 411 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/27 (44%), Positives = 22/27 (81%) Frame = -2 Query: 330 RISMXGLSSRTVPHLADAIHAAVTKLK 250 RI+M GL+++ + ++A +IH AVTK++ Sbjct: 385 RINMCGLTTKNLDYVAKSIHEAVTKIQ 411
>AATC_BOVIN (P33097) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 1) Length = 412 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/27 (44%), Positives = 22/27 (81%) Frame = -2 Query: 330 RISMXGLSSRTVPHLADAIHAAVTKLK 250 RI+M GL+++ + ++A +IH AVTK++ Sbjct: 386 RINMCGLTTKNLEYVATSIHEAVTKIQ 412
>DHSB_YEAST (P21801) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,| mitochondrial precursor (EC 1.3.5.1) (IP) Length = 266 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -1 Query: 259 KTEVNDNMATPFRNXXXNCLQQCPKGSTRGVLLAELR 149 K +N++M+ + NC + CPKG G+ +AE++ Sbjct: 224 KAMLNNSMSLYRCHTIMNCTRTCPKGLNPGLAIAEIK 260
>INSRR_MOUSE (Q9WTL4) Insulin receptor-related protein precursor (EC 2.7.10.1)| (IRR) (IR-related receptor) [Contains: Insulin receptor-related protein alpha chain; Insulin receptor-related protein beta chain] Length = 1300 Score = 29.3 bits (64), Expect = 2.6 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 8/53 (15%) Frame = -1 Query: 307 LQDCTP------SCRCHTC--CGYKTEVNDNMATPFRNXXXNCLQQCPKGSTR 173 L+ C P S RC T C + EV +AT F +CL QCP G TR Sbjct: 259 LRACPPGTYQYESGRCVTAELCAHLREV-PGLATTFGIYEGSCLAQCPPGFTR 310
>AATC_HUMAN (P17174) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 1) Length = 412 Score = 29.3 bits (64), Expect = 2.6 Identities = 11/27 (40%), Positives = 22/27 (81%) Frame = -2 Query: 330 RISMXGLSSRTVPHLADAIHAAVTKLK 250 RI++ GL+++ + ++A +IH AVTK++ Sbjct: 386 RINVSGLTTKNLDYVATSIHEAVTKIQ 412
>AATC_HORSE (P08906) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 1) Length = 412 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/27 (44%), Positives = 21/27 (77%) Frame = -2 Query: 330 RISMXGLSSRTVPHLADAIHAAVTKLK 250 RI+M GL+++ + ++A +IH AVTK + Sbjct: 386 RINMCGLTTKNLDYVATSIHEAVTKFQ 412
>DHSB_MOUSE (Q9CQA3) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,| mitochondrial precursor (EC 1.3.5.1) (Ip) (Iron-sulfur subunit of complex II) Length = 282 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/56 (30%), Positives = 22/56 (39%) Frame = -1 Query: 310 ELQDCTPSCRCHTCCGYKTEVNDNMATPFRNXXXNCLQQCPKGSTRGVLLAELRNL 143 +LQD RCHT NC Q CPKG G +AE++ + Sbjct: 235 KLQDPFSVYRCHTIM-------------------NCTQTCPKGLNPGKAIAEIKKM 271
>HIS4_METAC (Q8TU55) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 245 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +3 Query: 105 KLSQTTILVSLQGKFLSSANNTPLVEPFGHCCRQFXXXLRKGVAMLSF 248 K ++T LV L G N P++E CR+ ++ G + SF Sbjct: 44 KGAKTLHLVDLDGAIEGERKNAPIIEKIVQACREKGVSIQVGGGIRSF 91
>SLAP_BACTI (P35826) S-layer protein precursor (Surface layer protein)| (Fragment) Length = 393 Score = 27.7 bits (60), Expect = 7.5 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -1 Query: 271 CCGYKTEVNDNMATPFRNXXXNCLQQC 191 CC T+VN N+ PF + N + C Sbjct: 108 CCSAPTKVNSNVTKPFFSFAVNFVSSC 134
>BCK2_YEAST (P33306) Protein BCK2 (Bypass of kinase C protein)| Length = 851 Score = 27.7 bits (60), Expect = 7.5 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +2 Query: 74 NHHHL*SGVNKTVSDNNFSKSTRQIPEFSQ*HASG*T 184 +HHH S VN T S + S + +IP + + ASG T Sbjct: 5 SHHHRSSSVNSTKSRSTESTNKWKIPHYYRRSASGST 41
>VEMP_CVH22 (P19741) Envelope protein (Protein 5B)| Length = 77 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +1 Query: 238 CYHSLQFCNRSMYGICKMGYSPGAQTXHADP 330 C+ FCNR++YG K Y H DP Sbjct: 39 CFTCHMFCNRTVYGPIKNVYHIYQSYMHIDP 69
>HIS4_METMA (Q8PWS2) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 246 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/49 (26%), Positives = 25/49 (51%) Frame = +3 Query: 102 TKLSQTTILVSLQGKFLSSANNTPLVEPFGHCCRQFXXXLRKGVAMLSF 248 +K ++T LV L G N+P++E + C++ ++ G + SF Sbjct: 43 SKGAKTLHLVDLDGAIEGERKNSPIIEKIVNTCKEKGVSIQVGGGIRSF 91
>CE110_HUMAN (O43303) Centrosomal protein of 110 kDa (Cep110 protein)| Length = 1012 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 9/44 (20%) Frame = +2 Query: 224 EGGCHVI---------IHFSFVTAACMASARWGTVLELKPXMLI 328 E G H++ +H + ++ C+AS +GTV LKP ++ Sbjct: 488 ERGAHIMNSTCAAMPKLHEPYASSQCIASPNFGTVSGLKPASML 531 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,478,972 Number of Sequences: 219361 Number of extensions: 790765 Number of successful extensions: 2012 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1941 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2011 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
