ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066607.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 5e-17
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 86 2e-13
3gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome... 86 2e-13
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
5gb|AY104190.1| Zea mays PCO098162 mRNA sequence 78 4e-11
6gb|BT018388.1| Zea mays clone EL01N0314F03.d mRNA sequence 66 2e-07
7gb|AY627040.1| Mycoplasma bovis strain PG45 membrane lipoprotein... 46 0.15
8gb|AY549109.1| HIV-1 isolate MPD/RT13 from USA envelope glycopro... 42 2.4
9gb|AY549108.1| HIV-1 isolate MPD/RT1 from USA envelope glycoprot... 42 2.4
10gb|AY568807.1| Uncultured bacterium isolate JH10_C53 16S ribosom... 42 2.4
11gb|AC120746.5| Rattus norvegicus BAC CH230-25H1 (Children's Hos... 42 2.4
12gb|AC114276.2| Homo sapiens chromosome 5 clone CTC-388B19, compl... 42 2.4
13gb|BT017878.1| Zea mays clone EL01N0513H07.c mRNA sequence 40 9.5
14gb|AC158308.4| Mus musculus chromosome 3, clone RP23-182M12, com... 40 9.5
15ref|XM_414255.1| PREDICTED: Gallus gallus similar to gamma filam... 40 9.5
16gb|AC140982.2| Mus musculus BAC clone RP23-171L7 from chromosome... 40 9.5
17emb|Z99288.1|CEZK262 Caenorhabditis elegans Cosmid ZK262, comple... 40 9.5
18gb|AC121566.3| Mus musculus BAC clone RP23-225D10 from 1, comple... 40 9.5
19gb|AC163391.4| Mus musculus chromosome 3, clone RP23-173N16, com... 40 9.5
20emb|AL355140.25| Human DNA sequence from clone RP11-548B3 on chr... 40 9.5
21emb|AL591981.1| Listeria monocytogenes strain EGD, complete geno... 40 9.5
22emb|BX936325.9| Zebrafish DNA sequence from clone CH211-74P16 in... 40 9.5
23emb|BX004866.22| Mouse DNA sequence from clone RP23-360A7 on chr... 40 9.5
24gb|AC080007.26| Homo sapiens 3 BAC RP11-529F4 (Roswell Park Canc... 40 9.5
25emb|BX664747.11| Zebrafish DNA sequence from clone CH211-149D1 i... 40 9.5
26gb|AC102600.11| Mus musculus chromosome 3, clone RP23-376E16, co... 40 9.5
27emb|BX005442.10| Zebrafish DNA sequence from clone DKEY-88J15, c... 40 9.5
28gb|AC148174.7| Mus musculus chromosome 19, clone RP23-300E3, com... 40 9.5
29gb|AY106385.1| Zea mays PCO066310 mRNA sequence 40 9.5
30emb|AJ544620.1|TRU544620 Takifugu rubripes utrn gene for putativ... 40 9.5
31dbj|AP000901.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.5
32dbj|AP002788.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.5
33gb|AC162463.9| Mus musculus chromosome 19, clone RP24-319M18, co... 40 9.5
34gb|AC161256.3| Mus musculus BAC clone RP24-70H20 from chromosome... 40 9.5
35emb|AL954328.8| Mouse DNA sequence from clone RP24-462B5 on chro... 40 9.5
36emb|AL844559.14| Zebrafish DNA sequence from clone DKEY-14K1, co... 40 9.5 
>dbj|AK066607.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071P10, full
            insert sequence
          Length = 2344

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 202/253 (79%)
 Strand = Plus / Minus

                                                                        
Query: 178  catggtctccacaccgtgcccgtaggctcatccatcagggcgatgcctttgctagcaagc 237
            ||||||||||| || || || ||||| |||||||| ||||| |||||||||||  | |||
Sbjct: 2053 catggtctccatactgtaccagtaggttcatccatgagggctatgcctttgctgcctagc 1994

                                                                        
Query: 238  tccttcctgatctggtcagacacctcgaactgcttgttgttcctggcagcgatcctatgc 297
            |  |||||||| ||||||||||| || ||||||||||| ||||| |||||  | || |||
Sbjct: 1993 tgtttcctgatttggtcagacacatcaaactgcttgtttttccttgcagcagttctctgc 1934

                                                                        
Query: 298  tcaatctgctcactcagtgattcctctgtcagccctgcccgcttcagcgccttctccttt 357
            ||||| |||||   ||    ||| || |||| |||||| | |||||  || || ||||| 
Sbjct: 1933 tcaatttgctcctgcaacagttcttcagtcaaccctgctctcttcaaagctttatcctta 1874

                                                                        
Query: 358  agctgcttgagtacctctgctaaaggagatggtggcatcagaccaaggatggatagcttg 417
            || ||||| ||| ||||||| || | ||| |||||||||||||||||||| ||||  || 
Sbjct: 1873 agttgcttcagtgcctctgccaaggaagaaggtggcatcagaccaaggatagatatttta 1814

                         
Query: 418  tgtttaatttctg 430
            | |||||||||||
Sbjct: 1813 tttttaatttctg 1801



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 87/104 (83%)
 Strand = Plus / Minus

                                                                        
Query: 547  tgcagcttcttcaaatcatttaaattgccgtttattgccttcagaagctccatgaagcca 606
            |||| |||||| |||||||| ||||||| ||| ||||||||||| |  ||  | ||||||
Sbjct: 1684 tgcaacttcttaaaatcattcaaattgctgttaattgccttcagcaagtcagtaaagcca 1625

                                                        
Query: 607  tccagaacatctgtagtccgaagatcatctgacattgattccaa 650
            |||||||||||||| || | ||||||||| | ||| ||||||||
Sbjct: 1624 tccagaacatctgttgttctaagatcatccgccatagattccaa 1581
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 109/131 (83%)
 Strand = Plus / Plus

                                                                           
Query: 178     catggtctccacaccgtgcccgtaggctcatccatcagggcgatgcctttgctagcaagc 237
               ||||||||||| || || || ||||| |||||||| ||||| |||||||||||  | |||
Sbjct: 2378736 catggtctccatactgtaccagtaggttcatccatgagggctatgcctttgctgcctagc 2378795

                                                                           
Query: 238     tccttcctgatctggtcagacacctcgaactgcttgttgttcctggcagcgatcctatgc 297
               |  |||||||| ||||||||||| || ||||||||||| ||||| |||||  | || |||
Sbjct: 2378796 tgtttcctgatttggtcagacacatcaaactgcttgtttttccttgcagcagttctctgc 2378855

                          
Query: 298     tcaatctgctc 308
               ||||| |||||
Sbjct: 2378856 tcaatttgctc 2378866



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                           
Query: 559     aaatcatttaaattgccgtttattgccttcagaagctccatgaagccatccagaacatct 618
               |||||||| ||||||| ||| ||||||||||| |  ||  | ||||||||||||||||||
Sbjct: 2379323 aaatcattcaaattgctgttaattgccttcagcaagtcagtaaagccatccagaacatct 2379382

                                               
Query: 619     gtagtccgaagatcatctgacattgattccaa 650
               || || | ||||||||| | ||| ||||||||
Sbjct: 2379383 gttgttctaagatcatccgccatagattccaa 2379414



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                           
Query: 368     gtacctctgctaaaggagatggtggcatcagaccaaggatggatagcttgtgtttaattt 427
               |||||||||| || | ||| |||||||||||||||||||| ||||  || | ||||||||
Sbjct: 2379031 gtacctctgccaaggaagaaggtggcatcagaccaaggatagatattttatttttaattt 2379090

                  
Query: 428     ctg 430
               |||
Sbjct: 2379091 ctg 2379093
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>gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0083D24, complete sequence
          Length = 150503

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 109/131 (83%)
 Strand = Plus / Plus

                                                                         
Query: 178   catggtctccacaccgtgcccgtaggctcatccatcagggcgatgcctttgctagcaagc 237
             ||||||||||| || || || ||||| |||||||| ||||| |||||||||||  | |||
Sbjct: 95578 catggtctccatactgtaccagtaggttcatccatgagggctatgcctttgctgcctagc 95637

                                                                         
Query: 238   tccttcctgatctggtcagacacctcgaactgcttgttgttcctggcagcgatcctatgc 297
             |  |||||||| ||||||||||| || ||||||||||| ||||| |||||  | || |||
Sbjct: 95638 tgtttcctgatttggtcagacacatcaaactgcttgtttttccttgcagcagttctctgc 95697

                        
Query: 298   tcaatctgctc 308
             ||||| |||||
Sbjct: 95698 tcaatttgctc 95708



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                         
Query: 559   aaatcatttaaattgccgtttattgccttcagaagctccatgaagccatccagaacatct 618
             |||||||| ||||||| ||| ||||||||||| |  ||  | ||||||||||||||||||
Sbjct: 96165 aaatcattcaaattgctgttaattgccttcagcaagtcagtaaagccatccagaacatct 96224

                                             
Query: 619   gtagtccgaagatcatctgacattgattccaa 650
             || || | ||||||||| | ||| ||||||||
Sbjct: 96225 gttgttctaagatcatccgccatagattccaa 96256



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                         
Query: 368   gtacctctgctaaaggagatggtggcatcagaccaaggatggatagcttgtgtttaattt 427
             |||||||||| || | ||| |||||||||||||||||||| ||||  || | ||||||||
Sbjct: 95873 gtacctctgccaaggaagaaggtggcatcagaccaaggatagatattttatttttaattt 95932

                
Query: 428   ctg 430
             |||
Sbjct: 95933 ctg 95935
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 109/131 (83%)
 Strand = Plus / Plus

                                                                           
Query: 178     catggtctccacaccgtgcccgtaggctcatccatcagggcgatgcctttgctagcaagc 237
               ||||||||||| || || || ||||| |||||||| ||||| |||||||||||  | |||
Sbjct: 2378846 catggtctccatactgtaccagtaggttcatccatgagggctatgcctttgctgcctagc 2378905

                                                                           
Query: 238     tccttcctgatctggtcagacacctcgaactgcttgttgttcctggcagcgatcctatgc 297
               |  |||||||| ||||||||||| || ||||||||||| ||||| |||||  | || |||
Sbjct: 2378906 tgtttcctgatttggtcagacacatcaaactgcttgtttttccttgcagcagttctctgc 2378965

                          
Query: 298     tcaatctgctc 308
               ||||| |||||
Sbjct: 2378966 tcaatttgctc 2378976



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                           
Query: 559     aaatcatttaaattgccgtttattgccttcagaagctccatgaagccatccagaacatct 618
               |||||||| ||||||| ||| ||||||||||| |  ||  | ||||||||||||||||||
Sbjct: 2379433 aaatcattcaaattgctgttaattgccttcagcaagtcagtaaagccatccagaacatct 2379492

                                               
Query: 619     gtagtccgaagatcatctgacattgattccaa 650
               || || | ||||||||| | ||| ||||||||
Sbjct: 2379493 gttgttctaagatcatccgccatagattccaa 2379524



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                           
Query: 368     gtacctctgctaaaggagatggtggcatcagaccaaggatggatagcttgtgtttaattt 427
               |||||||||| || | ||| |||||||||||||||||||| ||||  || | ||||||||
Sbjct: 2379141 gtacctctgccaaggaagaaggtggcatcagaccaaggatagatattttatttttaattt 2379200

                  
Query: 428     ctg 430
               |||
Sbjct: 2379201 ctg 2379203
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>gb|AY104190.1| Zea mays PCO098162 mRNA sequence
          Length = 2120

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 237/303 (78%)
 Strand = Plus / Minus

                                                                        
Query: 168  ctctcgttcacatggtctccacaccgtgcccgtaggctcatccatcagggcgatgccttt 227
            |||| |||| ||||||||||| || || || | ||| || ||||||||||||||||||||
Sbjct: 1858 ctctggttcgcatggtctccatactgtaccagaaggttcgtccatcagggcgatgccttt 1799

                                                                        
Query: 228  gctagcaagctccttcctgatctggtcagacacctcgaactgcttgttgttcctggcagc 287
            | ||||||| |  ||||||||    ||||| | ||| |||||||| || ||||| ||  |
Sbjct: 1798 ggtagcaaggtttttcctgattccatcagatatctcaaactgcttattcttccttgcgac 1739

                                                                        
Query: 288  gatcctatgctcaatctgctcactcagtgattcctctgtcagccctgcccgcttcagcgc 347
              | || ||||||||||||||   || |  ||| || ||||||||||| ||||| |  | 
Sbjct: 1738 atttctctgctcaatctgctcttgcaattgttcttcagtcagccctgctcgctttaatga 1679

                                                                        
Query: 348  cttctcctttagctgcttgagtacctctgctaaaggagatggtggcatcagaccaaggat 407
             || ||||| |  ||||| ||||||||||| ||||  || | ||||||||||||||| ||
Sbjct: 1678 tttgtccttcaattgcttcagtacctctgccaaagatgaagatggcatcagaccaagtat 1619

                                                                        
Query: 408  ggatagcttgtgtttaatttctgctcccagcgcattcagagcttgaatgtgatcttctgg 467
             || |  |||| ||||| ||||| | |||| ||| ||||||||||||| | |||||||||
Sbjct: 1618 agacaatttgtttttaagttctgtttccagtgcaatcagagcttgaatataatcttctgg 1559

               
Query: 468  ctg 470
            |||
Sbjct: 1558 ctg 1556



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 68/79 (86%), Gaps = 3/79 (3%)
 Strand = Plus / Minus

                                                                        
Query: 545  gctgcagcttcttcaaatcatttaaattgccgtttattgccttcagaagctccatgaagc 604
            ||||||| |||||||||||||| | | ||| |||||| |||||||| |||||||||||||
Sbjct: 1463 gctgcagtttcttcaaatcattcagactgctgtttatggccttcagcagctccatgaagc 1404

                               
Query: 605  ca---tccagaacatctgt 620
             |   ||||||||||||||
Sbjct: 1403 aacggtccagaacatctgt 1385
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>gb|BT018388.1| Zea mays clone EL01N0314F03.d mRNA sequence
          Length = 1468

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 114/141 (80%)
 Strand = Plus / Minus

                                                                       
Query: 168 ctctcgttcacatggtctccacaccgtgcccgtaggctcatccatcagggcgatgccttt 227
           |||| |||| |||||||||||||| || || | ||| |||||||||||||||||||| ||
Sbjct: 338 ctctggttcgcatggtctccacactgtaccagaaggttcatccatcagggcgatgccctt 279

                                                                       
Query: 228 gctagcaagctccttcctgatctggtcagacacctcgaactgcttgttgttcctggcagc 287
           | ||||||| |  ||||||||    ||||| | ||| ||||| || || ||||| ||| |
Sbjct: 278 ggtagcaaggtttttcctgattccatcagatatctcaaactgtttattcttccttgcaac 219

                                
Query: 288 gatcctatgctcaatctgctc 308
           | | || ||||||||||||||
Sbjct: 218 gtttctctgctcaatctgctc 198
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>gb|AY627040.1| Mycoplasma bovis strain PG45 membrane lipoprotein P81 gene, complete
            cds
          Length = 2100

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 339  cttcagcgccttctcctttagctgctt 365
            |||||||||||| ||||||||||||||
Sbjct: 1519 cttcagcgccttttcctttagctgctt 1493
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>gb|AY549109.1| HIV-1 isolate MPD/RT13 from USA envelope glycoprotein (env) gene,
           partial cds
          Length = 1056

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 43  actaataataccacatatagg 63
           |||||||||||||||||||||
Sbjct: 202 actaataataccacatatagg 222
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>gb|AY549108.1| HIV-1 isolate MPD/RT1 from USA envelope glycoprotein (env) gene,
           partial cds
          Length = 1056

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 43  actaataataccacatatagg 63
           |||||||||||||||||||||
Sbjct: 202 actaataataccacatatagg 222
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>gb|AY568807.1| Uncultured bacterium isolate JH10_C53 16S ribosomal RNA gene,
           partial sequence
          Length = 938

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 198 cgtaggctcatccatcagggcgatgcctt 226
           |||||||||||||||||| |||| |||||
Sbjct: 233 cgtaggctcatccatcagcgcgaggcctt 205
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>gb|AC120746.5| Rattus norvegicus  BAC CH230-25H1 (Children's Hospital Oakland
            Research Institute Rat (BN/SsNHsd/MCW) BAC library)
            complete sequence
          Length = 234610

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 381  aggagatggtggcatcagacc 401
            |||||||||||||||||||||
Sbjct: 5789 aggagatggtggcatcagacc 5769
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>gb|AC114276.2| Homo sapiens chromosome 5 clone CTC-388B19, complete sequence
          Length = 127863

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 635   ctgacattgattccaaaaatg 655
             |||||||||||||||||||||
Sbjct: 75631 ctgacattgattccaaaaatg 75611
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>gb|BT017878.1| Zea mays clone EL01N0513H07.c mRNA sequence
          Length = 766

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 tctcttcagtcaacttggaa 131
           ||||||||||||||||||||
Sbjct: 341 tctcttcagtcaacttggaa 322
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>gb|AC158308.4| Mus musculus chromosome 3, clone RP23-182M12, complete sequence
          Length = 176856

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 379    aaaggagatggtggcatcag 398
              ||||||||||||||||||||
Sbjct: 173105 aaaggagatggtggcatcag 173086
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>ref|XM_414255.1| PREDICTED: Gallus gallus similar to gamma filamin protein
            (LOC415904), mRNA
          Length = 4617

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  tcagccctgcccgcttcagc 345
            ||||||||||||||||||||
Sbjct: 4025 tcagccctgcccgcttcagc 4006
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>gb|AC140982.2| Mus musculus BAC clone RP23-171L7 from chromosome 16, complete sequence
          Length = 208232

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 592    agctccatgaagccatccag 611
              ||||||||||||||||||||
Sbjct: 181890 agctccatgaagccatccag 181909
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>emb|Z99288.1|CEZK262 Caenorhabditis elegans Cosmid ZK262, complete sequence
          Length = 39555

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 349  ttctcctttagctgcttgag 368
            ||||||||||||||||||||
Sbjct: 5993 ttctcctttagctgcttgag 5974
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>gb|AC121566.3| Mus musculus BAC clone RP23-225D10 from 1, complete sequence
          Length = 152435

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 629    gatcatctgacattgattccaaaaatgc 656
              ||||||||||||||| ||| ||||||||
Sbjct: 125552 gatcatctgacattgcttcaaaaaatgc 125579
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>gb|AC163391.4| Mus musculus chromosome 3, clone RP23-173N16, complete sequence
          Length = 187855

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    aaaggagatggtggcatcag 398
              ||||||||||||||||||||
Sbjct: 178550 aaaggagatggtggcatcag 178569
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>emb|AL355140.25| Human DNA sequence from clone RP11-548B3 on chromosome 9 Contains the
              gene for Friedreich ataxia region gene X123, the 3' end of
              the APBA1 gene for myloid beta (A4) precursor
              protein-binding, family A, member 1 (X11), a novel gene and
              two CpG islands, complete sequence
          Length = 185096

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 592    agctccatgaagccatccag 611
              ||||||||||||||||||||
Sbjct: 100547 agctccatgaagccatccag 100528
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>emb|AL591981.1| Listeria monocytogenes strain EGD, complete genome, segment 9/12
          Length = 347050

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 640    attgattccaaaaatgcttt 659
              ||||||||||||||||||||
Sbjct: 219252 attgattccaaaaatgcttt 219271
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>emb|BX936325.9| Zebrafish DNA sequence from clone CH211-74P16 in linkage group 1,
             complete sequence
          Length = 185075

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 555   cttcaaatcatttaaattgc 574
             ||||||||||||||||||||
Sbjct: 37595 cttcaaatcatttaaattgc 37576
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>emb|BX004866.22| Mouse DNA sequence from clone RP23-360A7 on chromosome 4 Contains a
             ribosomal protein 7a (Rpl7a) pseudogene, complete sequence
          Length = 161600

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   tctcctttagctgcttgagt 369
             ||||||||||||||||||||
Sbjct: 87909 tctcctttagctgcttgagt 87928
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>gb|AC080007.26| Homo sapiens 3 BAC RP11-529F4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168551

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   caagcacagattaatcatcg 163
             ||||||||||||||||||||
Sbjct: 74778 caagcacagattaatcatcg 74797
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>emb|BX664747.11| Zebrafish DNA sequence from clone CH211-149D1 in linkage group 5,
             complete sequence
          Length = 115297

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   cttcaaatcatttaaattgc 574
             ||||||||||||||||||||
Sbjct: 54432 cttcaaatcatttaaattgc 54451
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>gb|AC102600.11| Mus musculus chromosome 3, clone RP23-376E16, complete sequence
          Length = 131703

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   aaaggagatggtggcatcag 398
             ||||||||||||||||||||
Sbjct: 28004 aaaggagatggtggcatcag 28023
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>emb|BX005442.10| Zebrafish DNA sequence from clone DKEY-88J15, complete sequence
          Length = 200176

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 555    cttcaaatcatttaaattgc 574
              ||||||||||||||||||||
Sbjct: 138316 cttcaaatcatttaaattgc 138297
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>gb|AC148174.7| Mus musculus chromosome 19, clone RP23-300E3, complete sequence
          Length = 166901

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 592    agctccatgaagccatccag 611
              ||||||||||||||||||||
Sbjct: 163094 agctccatgaagccatccag 163113
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>gb|AY106385.1| Zea mays PCO066310 mRNA sequence
          Length = 1083

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 tctcttcagtcaacttggaa 131
           ||||||||||||||||||||
Sbjct: 646 tctcttcagtcaacttggaa 627
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>emb|AJ544620.1|TRU544620 Takifugu rubripes utrn gene for putative utrophin, exons 55-78
          Length = 56648

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 593   gctccatgaagccatccaga 612
             ||||||||||||||||||||
Sbjct: 36420 gctccatgaagccatccaga 36439
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>dbj|AP000901.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-686G14, complete
              sequence
          Length = 205903

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    gccttctcctttagctgctt 365
              ||||||||||||||||||||
Sbjct: 121161 gccttctcctttagctgctt 121142
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>dbj|AP002788.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-347E10, complete
             sequence
          Length = 174311

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   gccttctcctttagctgctt 365
             ||||||||||||||||||||
Sbjct: 10705 gccttctcctttagctgctt 10686
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>gb|AC162463.9| Mus musculus chromosome 19, clone RP24-319M18, complete sequence
          Length = 161471

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 592   agctccatgaagccatccag 611
             ||||||||||||||||||||
Sbjct: 52473 agctccatgaagccatccag 52492
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>gb|AC161256.3| Mus musculus BAC clone RP24-70H20 from chromosome 9, complete sequence
          Length = 190832

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 549    cagcttcttcaaatcattta 568
              ||||||||||||||||||||
Sbjct: 108581 cagcttcttcaaatcattta 108562
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>emb|AL954328.8| Mouse DNA sequence from clone RP24-462B5 on chromosome 4, complete
             sequence
          Length = 42328

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   tcagaccaaggatggatagc 414
             ||||||||||||||||||||
Sbjct: 33716 tcagaccaaggatggatagc 33735
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>emb|AL844559.14| Zebrafish DNA sequence from clone DKEY-14K1, complete sequence
          Length = 216608

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 555   cttcaaatcatttaaattgc 574
             ||||||||||||||||||||
Sbjct: 81665 cttcaaatcatttaaattgc 81646


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,428,912
Number of Sequences: 3902068
Number of extensions: 5428912
Number of successful extensions: 102924
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102763
Number of HSP's gapped (non-prelim): 156
length of query: 692
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 669
effective length of database: 17,143,297,704
effective search space: 11468866163976
effective search space used: 11468866163976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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