ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FIXI_BRAJA (Q59207) Nitrogen fixation protein fixI (E1-E2 type c... 32 1.2
2FIBA_RAT (P06399) Fibrinogen alpha chain precursor [Contains: Fi... 32 1.5
3ANR50_HUMAN (Q9ULJ7) Ankyrin repeat domain-containing protein 50 31 2.6
4IF2_DESDG (Q30WJ0) Translation initiation factor IF-2 31 2.6
5KRA51_HUMAN (Q6L8H4) Keratin-associated protein 5-1 (Keratin-ass... 30 7.6

>FIXI_BRAJA (Q59207) Nitrogen fixation protein fixI (E1-E2 type cation ATPase|
           fixI) (EC 3.6.3.-)
          Length = 730

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 24/61 (39%), Positives = 31/61 (50%)
 Frame = +2

Query: 356 APAPVSDQQRAAPVSGAHAPWPVDDLILLGRHLDHPIPAPVSAAILVAPFAAVLPRPDLH 535
           AP+  +     +P+S AH      DL+ LGR L     APV+AAI  A  A  L R +L 
Sbjct: 627 APSLAAAHVSMSPISAAHLSQATADLVFLGRPL-----APVAAAIDSARKALHLMRQNLW 681

Query: 536 L 538
           L
Sbjct: 682 L 682



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>FIBA_RAT (P06399) Fibrinogen alpha chain precursor [Contains: Fibrinopeptide|
           A]
          Length = 782

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 529 IWTRQDGGKGSDEDCGGDWRRDRVVEMTPEQNQIVDRPRC 410
           +WT   G      + GGD R  R+VE  P Q +  D P C
Sbjct: 17  VWTADTGTTSEFIEAGGDIRGPRIVERQPSQCKETDWPFC 56



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>ANR50_HUMAN (Q9ULJ7) Ankyrin repeat domain-containing protein 50|
          Length = 1375

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +2

Query: 266 DGHGGLVVAEAM---EVVRHLL-HGATFQMQDVHAPAPVSDQQRAAPVSGAHAPWPVDDL 433
           +G   L+ A  M   E+V HLL HGA    +DV     +S      P S  HA   V  L
Sbjct: 622 EGRTALIAAAYMGHREIVEHLLDHGAEVNHEDVDGRTALSVAALCVPASKGHAS-VVSLL 680

Query: 434 ILLGRHLDH 460
           I  G  +DH
Sbjct: 681 IDRGAEVDH 689



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>IF2_DESDG (Q30WJ0) Translation initiation factor IF-2|
          Length = 984

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 535 VEIWTRQDGGKGSDEDCGGDWRRDRVVEMTPEQNQIVDRPR 413
           VE   +  GGK   ED GG+W R +  +  PE   +  +P+
Sbjct: 356 VEFGDKGAGGKKMREDVGGNWNRGKKGKRKPETKPVSTQPQ 396



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>KRA51_HUMAN (Q6L8H4) Keratin-associated protein 5-1 (Keratin-associated protein|
           5.1) (Ultrahigh sulfur keratin-associated protein 5.1)
          Length = 278

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 194 NCSLMGVSARSRPGCVNSC*LCSRSQPAFCN 102
           +CS  G  A S+ GC +SC  CS  +P  C+
Sbjct: 216 SCSSCGSCAGSKGGCGSSCSQCSCCKPCCCS 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,449,050
Number of Sequences: 219361
Number of extensions: 1664032
Number of successful extensions: 4950
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4943
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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