>gb|U80806.1|HPU80806 Hydrogenophaga pseudoflava carbon monoxide dehydrogenase middle
            subunit CutM, small subunit CutS and large subunit CutL
            genes, complete cds
          Length = 4394

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 268  cggccatggcggtcttgtagtcg 290
            |||||||||||||||||||||||
Sbjct: 1332 cggccatggcggtcttgtagtcg 1310

>emb|X77931.1|PTC2CUTAC P.thermocarboxydovorans (C2) cut A, cut B and cut C genes
          Length = 4723

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 261  atctcgacggccatggcggtcttgta 286
            |||||| |||||||||||||||||||
Sbjct: 1032 atctcggcggccatggcggtcttgta 1007

>ref|XM_478780.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1843

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 287 gtcgcggaggccatggaggtg 307
           |||||||||||||||||||||
Sbjct: 192 gtcgcggaggccatggaggtg 212

>ref|XM_752716.1| Ustilago maydis 521 hypothetical protein (UM01662.1) partial mRNA
          Length = 5868

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 437  ctgctcgggcgtcatctcgaccacc 461
            |||| ||||||||||||||||||||
Sbjct: 4920 ctgcccgggcgtcatctcgaccacc 4896

>gb|AC110023.3| Homo sapiens chromosome 15, clone RP11-739G5, complete sequence
          Length = 166975

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 36     actcttgctaatttttcttgc 56
              |||||||||||||||||||||
Sbjct: 107335 actcttgctaatttttcttgc 107315

>gb|AC090762.9| Homo sapiens chromosome 15, clone RP11-387E8, complete sequence
          Length = 192826

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    actcttgctaatttttcttgc 56
             |||||||||||||||||||||
Sbjct: 77783 actcttgctaatttttcttgc 77763

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 287      gtcgcggaggccatggaggtg 307
                |||||||||||||||||||||
Sbjct: 23031365 gtcgcggaggccatggaggtg 23031345

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 186      agagcaattctctcttcaaat 206
                |||||||||||||||||||||
Sbjct: 28935522 agagcaattctctcttcaaat 28935502



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 309     tccgtcacctcctccatggc 328
               ||||||||||||||||||||
Sbjct: 5742316 tccgtcacctcctccatggc 5742335

>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1121_A05
          Length = 172668

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 287    gtcgcggaggccatggaggtg 307
              |||||||||||||||||||||
Sbjct: 106579 gtcgcggaggccatggaggtg 106559

>dbj|AP004052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1218_D07
          Length = 114511

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 186   agagcaattctctcttcaaat 206
             |||||||||||||||||||||
Sbjct: 18580 agagcaattctctcttcaaat 18560

>dbj|AK067178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098E20, full
           insert sequence
          Length = 1842

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 287 gtcgcggaggccatggaggtg 307
           |||||||||||||||||||||
Sbjct: 191 gtcgcggaggccatggaggtg 211

>gb|AC101970.11| Mus musculus chromosome 1, clone RP24-267G24, complete sequence
          Length = 167090

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    catgtgcctttccaccaaga 230
              ||||||||||||||||||||
Sbjct: 139360 catgtgcctttccaccaaga 139341

>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 440    ctcgggcgtcatctcgacca 459
              ||||||||||||||||||||
Sbjct: 318640 ctcgggcgtcatctcgacca 318621

>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 562     gcgacgacagcgtcgccgcc 581
               ||||||||||||||||||||
Sbjct: 1596627 gcgacgacagcgtcgccgcc 1596646

>ref|XM_958856.1| Neurospora crassa OR74A hypothetical protein (NCU09307.1) partial
            mRNA
          Length = 3285

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 514  cctgccgcgtccagatctccacct 537
            |||||||||||||||| |||||||
Sbjct: 2950 cctgccgcgtccagatttccacct 2927

>ref|XM_331998.1| Neurospora crassa OR74A hypothetical protein (NCU09307.1) partial
            mRNA
          Length = 3285

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 514  cctgccgcgtccagatctccacct 537
            |||||||||||||||| |||||||
Sbjct: 2950 cctgccgcgtccagatttccacct 2927

>gb|AC158931.4| Mus musculus chromosome 1, clone RP23-3H19, complete sequence
          Length = 212994

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   catgtgcctttccaccaaga 230
             ||||||||||||||||||||
Sbjct: 31527 catgtgcctttccaccaaga 31508

>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 423     tcgacgatctgattctgctc 442
               ||||||||||||||||||||
Sbjct: 4713885 tcgacgatctgattctgctc 4713866

>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      ttcgtatgcatatgcatgca 23
              ||||||||||||||||||||
Sbjct: 104835 ttcgtatgcatatgcatgca 104816

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 4        ttcgtatgcatatgcatgca 23
                ||||||||||||||||||||
Sbjct: 35208218 ttcgtatgcatatgcatgca 35208237

>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1135_F06
          Length = 102230

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   tccgtcacctcctccatggc 328
             ||||||||||||||||||||
Sbjct: 31830 tccgtcacctcctccatggc 31849

>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete
             sequence
          Length = 82895

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     ttcgtatgcatatgcatgca 23
             ||||||||||||||||||||
Sbjct: 52212 ttcgtatgcatatgcatgca 52231

>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
            complete sequence
          Length = 173770

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    ttcgtatgcatatgcatgca 23
            ||||||||||||||||||||
Sbjct: 4064 ttcgtatgcatatgcatgca 4083


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,306,375
Number of Sequences: 3902068
Number of extensions: 4306375
Number of successful extensions: 77366
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77141
Number of HSP's gapped (non-prelim): 225
length of query: 628
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 605
effective length of database: 17,143,297,704
effective search space: 10371695110920
effective search space used: 10371695110920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)