ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32f21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137679.11| Mus musculus chromosome 12, clone RP23-302N13, c... 44 0.50
2gb|AC023484.5| Homo sapiens chromosome 3 clone RP11-454F24 map 3... 44 0.50
3gb|AC129884.4| Ornithorhynchus anatinus clone OA_Bb-5C22, comple... 44 0.50
4emb|CT030189.8| Mouse DNA sequence from clone RP24-402B23 on chr... 44 0.50
5gb|AC122751.8| Mus musculus chromosome 8, clone RP24-320L13, com... 42 2.0
6gb|AY279340.1| Drosophila orena xanthine dehydrogenase (Xdh) gen... 42 2.0
7gb|AC011282.3| Homo sapiens BAC clone CTD-2009F22 from 7, comple... 42 2.0
8gb|AC158353.3| Mus musculus chromosome 8, clone RP24-363C18, com... 42 2.0
9gb|AC013791.9| Homo sapiens chromosome 11, clone RP11-19N21, com... 42 2.0
10gb|AC005950.1|AC005950 Homo sapiens Chromosome 11p15.5 PAC clone... 42 2.0
11gb|AC107704.8| Mus musculus chromosome 7, clone RP24-121L4, comp... 40 7.9
12gb|AC161220.5| Mus musculus chromosome 5, clone RP23-9G1, comple... 40 7.9
13gb|AC004782.1| Homo sapiens chromosome 5, BAC clone 205e20 (LBNL... 40 7.9
14gb|AC036145.11| Mus musculus chromosome 5, clone RP23-439C22, co... 40 7.9
15ref|XM_383329.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 7.9
16gb|AC116587.4| Mus musculus BAC clone RP23-409C18 from 12, compl... 40 7.9
17gb|AY436590.1| Homo sapiens nuclear receptor subfamily 3, group ... 40 7.9
18emb|AL359836.16| Human DNA sequence from clone RP11-389E6 on chr... 40 7.9
19emb|AL139377.8| Human DNA sequence from clone RP11-251J8 on chro... 40 7.9
20emb|AL080249.26|HSJ564F22 Human DNA sequence from clone RP4-564F... 40 7.9
21emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4,... 40 7.9
22gb|AC124966.33| Medicago truncatula clone mth2-8i15, complete se... 40 7.9
23gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, compl... 40 7.9
24emb|BX649557.8| Zebrafish DNA sequence from clone DKEYP-61G11 in... 40 7.9
25gb|AC008637.7| Homo sapiens chromosome 5 clone CTB-178M22, compl... 40 7.9
26gb|AC117405.4| Homo sapiens X BAC RP11-340I10 (Roswell Park Canc... 40 7.9
27gb|AC102801.2| Homo sapiens chromosome 8, clone RP11-960P16, com... 40 7.9
28gb|AC084336.6| Homo sapiens chromosome 8, clone RP11-625F15, com... 40 7.9
29gb|AC161052.2| Mus musculus BAC clone RP23-393J15 from chromosom... 40 7.9
30gb|AC012634.8| Homo sapiens chromosome 5 clone CTD-2185H17, comp... 40 7.9
31dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
32gb|AF139987.1|AF139987 Mus musculus LIM-kinase1 (Limk1) gene, co... 40 7.9
33gb|AC092093.34| Mus musculus strain C57BL/6J chromosome 10 clone... 40 7.9
34gb|AF289664.1|AF289664 Mus musculus CYLN2, RFC2, WBSCR15, and EI... 40 7.9
35gb|AC155269.2| Mus musculus BAC clone RP23-215E17 from 12, compl... 40 7.9
36gb|AC155234.1| Mus musculus BAC clone RP24-394J17 from 13, compl... 40 7.9
37gb|AC005887.3|AC005887 citb_173_i_12, complete sequence 40 7.9
38emb|BX323819.9| Zebrafish DNA sequence from clone CH211-132F19 i... 40 7.9
39gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 7.9
40gb|AC166938.5| Mus musculus BAC clone RP23-85H24 from chromosome... 40 7.9 
>gb|AC137679.11| Mus musculus chromosome 12, clone RP23-302N13, complete sequence
          Length = 186273

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 300    ggattaaaacagatggatttct 321
              ||||||||||||||||||||||
Sbjct: 173787 ggattaaaacagatggatttct 173808
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>gb|AC023484.5| Homo sapiens chromosome 3 clone RP11-454F24 map 3p, complete sequence
          Length = 192875

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 141   gatttttccacatgatattttc 162
             ||||||||||||||||||||||
Sbjct: 26144 gatttttccacatgatattttc 26123
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>gb|AC129884.4| Ornithorhynchus anatinus clone OA_Bb-5C22, complete sequence
          Length = 120929

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 506   cttcccagatcatttttaaaat 527
             ||||||||||||||||||||||
Sbjct: 97220 cttcccagatcatttttaaaat 97241
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>emb|CT030189.8| Mouse DNA sequence from clone RP24-402B23 on chromosome 12, complete
              sequence
          Length = 223910

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 300    ggattaaaacagatggatttct 321
              ||||||||||||||||||||||
Sbjct: 186922 ggattaaaacagatggatttct 186901
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>gb|AC122751.8| Mus musculus chromosome 8, clone RP24-320L13, complete sequence
          Length = 162548

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 506   cttcccagatcatttttaaaatctg 530
             |||||||||| ||||||||||||||
Sbjct: 53966 cttcccagataatttttaaaatctg 53990
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>gb|AY279340.1| Drosophila orena xanthine dehydrogenase (Xdh) gene, exons 2 through 4
            and partial cds
          Length = 4810

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 229  gatacaacgagaagcaagtgaagat 253
            |||||||||||||||||||| ||||
Sbjct: 3368 gatacaacgagaagcaagtggagat 3392
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>gb|AC011282.3| Homo sapiens BAC clone CTD-2009F22 from 7, complete sequence
          Length = 86106

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 96    aaaagaggaccacattaaaga 116
             |||||||||||||||||||||
Sbjct: 45960 aaaagaggaccacattaaaga 45980
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>gb|AC158353.3| Mus musculus chromosome 8, clone RP24-363C18, complete sequence
          Length = 161841

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 506    cttcccagatcatttttaaaatctg 530
              |||||||||| ||||||||||||||
Sbjct: 154322 cttcccagataatttttaaaatctg 154298
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>gb|AC013791.9| Homo sapiens chromosome 11, clone RP11-19N21, complete sequence
          Length = 174569

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 435   ctgagcaccatcttggcaggc 455
             |||||||||||||||||||||
Sbjct: 90861 ctgagcaccatcttggcaggc 90841
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>gb|AC005950.1|AC005950 Homo sapiens Chromosome 11p15.5 PAC clone pDJ754h15 containing
             cdk-inhibitor p57/KIP2 (CDKN1C) gene, complete sequence
          Length = 137932

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 435   ctgagcaccatcttggcaggc 455
             |||||||||||||||||||||
Sbjct: 55057 ctgagcaccatcttggcaggc 55077
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>gb|AC107704.8| Mus musculus chromosome 7, clone RP24-121L4, complete sequence
          Length = 194458

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    tttccctacagttctgcagc 178
              ||||||||||||||||||||
Sbjct: 129303 tttccctacagttctgcagc 129284
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>gb|AC161220.5| Mus musculus chromosome 5, clone RP23-9G1, complete sequence
          Length = 205791

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 329    aaaaggatatgtaccagataaatt 352
              ||||||||| ||||||||||||||
Sbjct: 106700 aaaaggataagtaccagataaatt 106677
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>gb|AC004782.1| Homo sapiens chromosome 5, BAC clone 205e20 (LBNL H170), complete
             sequence
          Length = 184706

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 87    taaactagaaaaagaggaccacattaaa 114
             |||||||||||||||||| || ||||||
Sbjct: 14047 taaactagaaaaagaggaacaaattaaa 14020
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>gb|AC036145.11| Mus musculus chromosome 5, clone RP23-439C22, complete sequence
          Length = 182228

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 329   aaaaggatatgtaccagataaatt 352
             ||||||||| ||||||||||||||
Sbjct: 10498 aaaaggataagtaccagataaatt 10475
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>ref|XM_383329.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03153.1)
            partial mRNA
          Length = 7644

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  atcaaccaatgaccagaaga 285
            ||||||||||||||||||||
Sbjct: 7634 atcaaccaatgaccagaaga 7615
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>gb|AC116587.4| Mus musculus BAC clone RP23-409C18 from 12, complete sequence
          Length = 202651

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 28     gccaatctgacaacaaacgcacatgatt 55
              |||| |||||| ||||||||||||||||
Sbjct: 133773 gccagtctgaccacaaacgcacatgatt 133800
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>gb|AY436590.1| Homo sapiens nuclear receptor subfamily 3, group C, member 1
              (glucocorticoid receptor) (NR3C1) gene, complete cds
          Length = 127687

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 87     taaactagaaaaagaggaccacattaaa 114
              |||||||||||||||||| || ||||||
Sbjct: 118184 taaactagaaaaagaggaacaaattaaa 118157
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>emb|AL359836.16| Human DNA sequence from clone RP11-389E6 on chromosome 10 Contains the
             5' end of gene LOC118987 and a CpG island, complete
             sequence
          Length = 49052

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 515   tcatttttaaaatctgaaca 534
             ||||||||||||||||||||
Sbjct: 44254 tcatttttaaaatctgaaca 44235
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>emb|AL139377.8| Human DNA sequence from clone RP11-251J8 on chromosome 13 Contains 2
             novel genes, the KIAA0610 gene and a CpG island, complete
             sequence
          Length = 153964

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   catttttaaaatctgaacac 535
             ||||||||||||||||||||
Sbjct: 63650 catttttaaaatctgaacac 63631
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>emb|AL080249.26|HSJ564F22 Human DNA sequence from clone RP4-564F22 on chromosome 20 Contains
           the LBP gene encoding the lipopolysaccharide-binding
           protein, a RNU71A gene for U71A small nucleolar RNA, a
           RNU71B gene for U71B small nucleolar RNA, a novel gene,
           a novel gene (FLJ33613) and 3 CpG islands, complete
           sequence
          Length = 95508

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 508 tcccagatcatttttaaaat 527
           ||||||||||||||||||||
Sbjct: 646 tcccagatcatttttaaaat 627
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>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16,
             complete sequence
          Length = 176383

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    ctagaaaaagaggaccacat 110
             ||||||||||||||||||||
Sbjct: 86240 ctagaaaaagaggaccacat 86259
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>gb|AC124966.33| Medicago truncatula clone mth2-8i15, complete sequence
          Length = 121141

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 241    agcaagtgaagatttcagtaatga 264
              |||| |||||||||||||||||||
Sbjct: 120382 agcatgtgaagatttcagtaatga 120405
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>gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, complete sequence
          Length = 164668

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 87   taaactagaaaaagaggaccacattaaa 114
            |||||||||||||||||| || ||||||
Sbjct: 4905 taaactagaaaaagaggaacaaattaaa 4932
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>emb|BX649557.8| Zebrafish DNA sequence from clone DKEYP-61G11 in linkage group 3,
             complete sequence
          Length = 163934

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 138   actgatttttccacatgatatttt 161
             ||||||| ||||||||||||||||
Sbjct: 86932 actgattgttccacatgatatttt 86955
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>gb|AC008637.7| Homo sapiens chromosome 5 clone CTB-178M22, complete sequence
          Length = 100547

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 499   aagtccacttcccagatcat 518
             ||||||||||||||||||||
Sbjct: 40025 aagtccacttcccagatcat 40006
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>gb|AC117405.4| Homo sapiens X BAC RP11-340I10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 153177

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    cacatgatattttccctaca 168
              ||||||||||||||||||||
Sbjct: 135142 cacatgatattttccctaca 135161
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>gb|AC102801.2| Homo sapiens chromosome 8, clone RP11-960P16, complete sequence
          Length = 119671

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 70    cactaacaaagaatccgtaaacta 93
             ||||||||||||||| ||||||||
Sbjct: 71578 cactaacaaagaatctgtaaacta 71555
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>gb|AC084336.6| Homo sapiens chromosome 8, clone RP11-625F15, complete sequence
          Length = 156235

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 70    cactaacaaagaatccgtaaacta 93
             ||||||||||||||| ||||||||
Sbjct: 29578 cactaacaaagaatctgtaaacta 29601
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>gb|AC161052.2| Mus musculus BAC clone RP23-393J15 from chromosome 12, complete sequence
          Length = 201284

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 155    atattttccctacagttctgcagctatg 182
              ||||||||| |||||||||||| |||||
Sbjct: 165446 atattttccttacagttctgcatctatg 165419
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>gb|AC012634.8| Homo sapiens chromosome 5 clone CTD-2185H17, complete sequence
          Length = 237712

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 87    taaactagaaaaagaggaccacattaaa 114
             |||||||||||||||||| || ||||||
Sbjct: 96035 taaactagaaaaagaggaacaaattaaa 96008
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 91       ctagaaaaagaggaccacat 110
                ||||||||||||||||||||
Sbjct: 22991784 ctagaaaaagaggaccacat 22991803
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>gb|AF139987.1|AF139987 Mus musculus LIM-kinase1 (Limk1) gene, complete cds; Wbscr1 (Wbscr1)
              gene, alternative splice products, complete cds; Wbscr5
              (Wbscr5) gene, alternative splice products, complete cds;
              and replication factor C, 40kDa subunit (Rfc2) gene,
              complete cds
          Length = 114898

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     cgtaaactagaaaaagagga 104
              ||||||||||||||||||||
Sbjct: 111214 cgtaaactagaaaaagagga 111195
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>gb|AC092093.34| Mus musculus strain C57BL/6J chromosome 10 clone rp23-168o8, complete
              sequence
          Length = 200124

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 515    tcatttttaaaatctgaacacatg 538
              ||||||| ||||||||||||||||
Sbjct: 161118 tcattttgaaaatctgaacacatg 161141
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>gb|AF289664.1|AF289664 Mus musculus CYLN2, RFC2, WBSCR15, and EIF4H genes, complete cds
          Length = 161852

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cgtaaactagaaaaagagga 104
             ||||||||||||||||||||
Sbjct: 99780 cgtaaactagaaaaagagga 99799
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>gb|AC155269.2| Mus musculus BAC clone RP23-215E17 from 12, complete sequence
          Length = 198927

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 28     gccaatctgacaacaaacgcacatgatt 55
              |||| |||||| ||||||||||||||||
Sbjct: 116378 gccagtctgaccacaaacgcacatgatt 116351
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>gb|AC155234.1| Mus musculus BAC clone RP24-394J17 from 13, complete sequence
          Length = 155603

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    aaagaatccgtaaactagaa 96
             ||||||||||||||||||||
Sbjct: 84486 aaagaatccgtaaactagaa 84505
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>gb|AC005887.3|AC005887 citb_173_i_12, complete sequence
          Length = 120578

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 515   tcatttttaaaatctgaaca 534
             ||||||||||||||||||||
Sbjct: 39482 tcatttttaaaatctgaaca 39501
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>emb|BX323819.9| Zebrafish DNA sequence from clone CH211-132F19 in linkage group 17,
             complete sequence
          Length = 178951

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 156   tattttccctacagttctgcagct 179
             ||||||||||||| ||||||||||
Sbjct: 19905 tattttccctacatttctgcagct 19928
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
             sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 515   tcatttttaaaatctgaacacatg 538
             ||||||| ||||||||||||||||
Sbjct: 69768 tcattttgaaaatctgaacacatg 69791
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>gb|AC166938.5| Mus musculus BAC clone RP23-85H24 from chromosome 5, complete sequence
          Length = 231866

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     cgtaaactagaaaaagagga 104
              ||||||||||||||||||||
Sbjct: 128680 cgtaaactagaaaaagagga 128661


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,754,757
Number of Sequences: 3902068
Number of extensions: 5754757
Number of successful extensions: 106721
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106612
Number of HSP's gapped (non-prelim): 109
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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