ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32f17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full... 852 0.0
2ref|XM_464784.1| Oryza sativa (japonica cultivar-group), mRNA 311 1e-81
3gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- a... 287 2e-74
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
5dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
6dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 2e-53
7ref|NM_191846.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
9dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
11gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, compl... 46 0.13
12gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, comp... 46 0.13
13gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, comple... 46 0.13
14gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,... 46 0.13
15gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, comp... 42 2.0
16gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly... 42 2.0
17ref|XM_451567.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g ... 42 2.0
18gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete s... 42 2.0
19emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 2.0
20gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome... 42 2.0
21gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 42 2.0
22gb|AC163358.3| Mus musculus BAC clone RP23-11M14 from chromosome... 40 7.8
23gb|AC147570.3| Homo sapiens BAC clone RP11-1176F21 from UL, comp... 40 7.8
24gb|AC140208.2| Mus musculus BAC clone RP24-469B21 from chromosom... 40 7.8
25gb|AC105457.1| Homo sapiens chromosome 21 clone RP11-271G11 map ... 40 7.8
26gb|AC124688.3| Mus musculus BAC clone RP24-484D9 from chromosome... 40 7.8
27emb|CT025841.2| Medicago truncatula chromosome 5 clone mth2-131j... 40 7.8
28emb|AL512404.15| Human DNA sequence from clone RP11-328C7 on chr... 40 7.8
29gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydroge... 40 7.8
30gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete s... 40 7.8
31emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, c... 40 7.8
32gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, comple... 40 7.8
33gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.8
34gb|AC000030.5| Homo sapiens Chromosome 12 Cosmid Clone c200f3, c... 40 7.8
35gb|AC006112.4| Homo sapiens chromosome 16 clone RP11-472H7, comp... 40 7.8
36dbj|BS000003.1| Pan troglodytes chromosome 22 clone:PTB-084L06, ... 40 7.8
37emb|AL163204.2|HS21C004 Homo sapiens chromosome 21 segment HS21C004 40 7.8
38gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) g... 40 7.8
39gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 7.8
40gb|AC155302.2| Mus musculus BAC clone RP24-227A11 from chromosom... 40 7.8
41dbj|AP001466.1| Homo sapiens genomic DNA, chromosome 21q11.1, cl... 40 7.8 
>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
           sequence
          Length = 936

 Score =  852 bits (430), Expect = 0.0
 Identities = 512/535 (95%), Gaps = 4/535 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagatagcatcaatna-gaaaaatgcgtggtaggaagaaatt-agcca-gaaacaccca 57
           ||||||||||||||| | ||||||||||||| ||||||||||| ||||| |||||||| |
Sbjct: 124 caagatagcatcaatcaagaaaaatgcgtgggaggaagaaatttagccaagaaacaccaa 183

                                                                       
Query: 58  tgactnaaactagtagtgggatt-atttgccttcttgaagaccccagcttgggcagaagc 116
           ||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 184 tgactaaaattagtagtggaattcatttgccttcttgaagaccccagcttgggcagaagc 243

                                                                       
Query: 117 agcactatcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgg 176
           ||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 244 agcaccatcagaggtcacggccacgacgatgcagtccttcacctgctgggtggtaaatgg 303

                                                                       
Query: 177 gaacttgttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgcc 236
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 304 gaacttcttgttcacaatggagttgaggtatgcagctgccccctcacgtatcagggcgcc 363

                                                                       
Query: 237 aataccatcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aataccatcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacc 423

                                                                       
Query: 297 tatcatactgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tatcatactgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgc 483

                                                                       
Query: 357 aattatagcgtctgggtgattcttccagaagtcgcaggatccaatgaatccatgcttctt 416
           || |||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 484 aactatagcatctgggtgattcttccagtagtcgcaggatccaatgaacccatgcttctt 543

                                                                       
Query: 417 tggacttgcagggacttcatgggaaggtgtacttggggtgctcggtgtagtgccgtaaga 476
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tggacttgcagggacatcatgggaaggtgtacttggggtgctcggtgtagtgccgtaaga 603

                                                                  
Query: 477 tggcgtcggtgtagtgccataagatggcgtcngtgtagtgccgtaagatggcgtc 531
           |||||||||||||||||| |||||||||||| ||||||||||||||| |||||||
Sbjct: 604 tggcgtcggtgtagtgccgtaagatggcgtcggtgtagtgccgtaagttggcgtc 658



 Score =  149 bits (75), Expect = 1e-32
 Identities = 106/117 (90%), Gaps = 6/117 (5%)
 Strand = Plus / Plus

                                                                       
Query: 458 tcggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcngtgtagtgc 517
           ||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||
Sbjct: 609 tcggtgtagtgccgtaagatggcgtcggtgtagtgccgtaagttggcgtcggtgtagtgc 668

                                                                    
Query: 518 cgtaagatggcgtcngcgttggtgtagtaccgtaagttggtgtcggtgtcgggttgt 574
           ||||||||||||||      |||||||| ||||||||||||||||||||||| ||||
Sbjct: 669 cgtaagatggcgtc------ggtgtagtgccgtaagttggtgtcggtgtcggattgt 719
to top
>ref|XM_464784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score =  311 bits (157), Expect = 1e-81
 Identities = 374/447 (83%), Gaps = 6/447 (1%)
 Strand = Plus / Minus

                                                                       
Query: 81  atttgccttcttgaagaccccagcttgggcagaagcagcactatcagaggtcgcggccac 140
           ||||||||||||||||| | |||| |||| ||||||||| | ||||||||||  ||||||
Sbjct: 645 atttgccttcttgaagatctcagcctgggaagaagcagcgccatcagaggtcatggccac 586

                                                                       
Query: 141 gacgatgcagtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagtt 200
           ||||||||| ||||| ||||| ||||| ||||| ||||| || |||||||||||||||||
Sbjct: 585 gacgatgcaatccttaacctgttgggtggtaaaagggaatttcttgttcacaatggagtt 526

                                                                       
Query: 201 gaggtatgcagctgccccctcgcgtatcagggcgccaataccatcagttctagtgtttga 260
           ||||||||||||||| |||||||| | ||| || ||| |||||||||||| |||||||||
Sbjct: 525 gaggtatgcagctgctccctcgcggagcagagcaccagtaccatcagttccagtgtttga 466

                                                                       
Query: 261 gagtgcatcatgcatatttcctagcttcttgccacctatcatactgcatgcagcaccaaa 320
            ||||||||||| | |||| ||||||||||||||   |||| |||||| |||| ||| | 
Sbjct: 465 aagtgcatcatgaagattttctagcttcttgccagtgatcaaactgcaagcagtaccgag 406

                                                                       
Query: 321 tgtcttgccgatgttgccaagggacccaatagctgcaattatagcgtctgggtgattctt 380
           ||||||||| |||| ||||||||||||||||||||  || ||| | ||||| || |||||
Sbjct: 405 tgtcttgccaatgtcgccaagggacccaatagctgagatgataacatctggatggttctt 346

                                                                       
Query: 381 ccagaagtcgcaggatccaatgaatccatgcttctttggacttgcagggacttcatggga 440
           |||| | ||||||||||||  |||  |||||||  | |||  | ||||||| |||     
Sbjct: 345 ccagtaatcgcaggatccacagaaatcatgctttgtcggaacttcagggacatca----- 291

                                                                       
Query: 441 aggtgtacttggggtgctcggtgtagtgccgtaagatggcgtcggtgtagtgccataaga 500
            ||||| || |||||||| ||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 290 -ggtgtgctgggggtgcttggtgtcgtgccgtaagatggtgttggtgtagtgccgtaaga 232

                                      
Query: 501 tggcgtcngtgtagtgccgtaagatgg 527
           ||| ||  |||||||||| ||||||||
Sbjct: 231 tggtgttggtgtagtgccataagatgg 205



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                       
Query: 460 ggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcngtgtagtgccg 519
           |||||||||||||||||||| || |||||||||||||||||||| ||  |||||| ||||
Sbjct: 248 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatggtgttggtgtagagccg 189

               
Query: 520 taag 523
           ||||
Sbjct: 188 taag 185



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 535 gttggtgtagtaccgtaagttggtgtcggtgt 566
           ||||||||||| ||||||| |||||| |||||
Sbjct: 251 gttggtgtagtgccgtaagatggtgttggtgt 220
to top
>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich
           protein mRNA, complete cds
          Length = 902

 Score =  287 bits (145), Expect = 2e-74
 Identities = 371/447 (82%), Gaps = 6/447 (1%)
 Strand = Plus / Minus

                                                                       
Query: 81  atttgccttcttgaagaccccagcttgggcagaagcagcactatcagaggtcgcggccac 140
           ||||||||||||||||| | |||| |||| ||||||||| | ||||||||||  ||||||
Sbjct: 709 atttgccttcttgaagatctcagcctgggaagaagcagcgccatcagaggtcatggccac 650

                                                                       
Query: 141 gacgatgcagtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagtt 200
           ||||||||| ||||| ||||| ||||| ||||| ||||| || |||||||||||||||||
Sbjct: 649 gacgatgcaatccttaacctgttgggtggtaaaagggaatttcttgttcacaatggagtt 590

                                                                       
Query: 201 gaggtatgcagctgccccctcgcgtatcagggcgccaataccatcagttctagtgtttga 260
           ||||||||||||||| |||||||| | ||| || ||| |||||||||||| |||||||||
Sbjct: 589 gaggtatgcagctgctccctcgcggagcagagcaccagtaccatcagttccagtgtttga 530

                                                                       
Query: 261 gagtgcatcatgcatatttcctagcttcttgccacctatcatactgcatgcagcaccaaa 320
            ||||||||||| | |||| ||||||||||||||   |||| |||||| |||| | | | 
Sbjct: 529 aagtgcatcatgaagattttctagcttcttgccagtgatcaaactgcaagcagtatcgag 470

                                                                       
Query: 321 tgtcttgccgatgttgccaagggacccaatagctgcaattatagcgtctgggtgattctt 380
           |||| |||| |||| ||||||||||||||||||||  || ||| | ||||| || |||||
Sbjct: 469 tgtcatgccaatgtcgccaagggacccaatagctgagatgataacatctggatggttctt 410

                                                                       
Query: 381 ccagaagtcgcaggatccaatgaatccatgcttctttggacttgcagggacttcatggga 440
           |||| | ||||||||||||  |||  |||||||  | |||  | ||||||| |||     
Sbjct: 409 ccagtaatcgcaggatccacagaaatcatgctttgtcggaacttcagggacatca----- 355

                                                                       
Query: 441 aggtgtacttggggtgctcggtgtagtgccgtaagatggcgtcggtgtagtgccataaga 500
            ||||| || |||| ||| ||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 354 -ggtgtgctgggggagcttggtgtcgtgccgtaagatggtgttggtgtagtgccgtaaga 296

                                      
Query: 501 tggcgtcngtgtagtgccgtaagatgg 527
           ||| ||  |||||||||| ||||||||
Sbjct: 295 tggtgttggtgtagtgccataagatgg 269



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                       
Query: 460 ggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcngtgtagtgccg 519
           |||||||||||||||||||| || |||||||||||||||||||| ||  |||||| ||||
Sbjct: 312 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatggtgttggtgtagagccg 253

               
Query: 520 taag 523
           ||||
Sbjct: 252 taag 249



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 535 gttggtgtagtaccgtaagttggtgtcggtgt 566
           ||||||||||| ||||||| |||||| |||||
Sbjct: 315 gttggtgtagtgccgtaagatggtgttggtgt 284
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  262 bits (132), Expect = 1e-66
 Identities = 261/304 (85%)
 Strand = Plus / Plus

                                                                           
Query: 81      atttgccttcttgaagaccccagcttgggcagaagcagcactatcagaggtcgcggccac 140
               ||||||||||||||||| | |||| |||| ||||||||| | ||||||||||  ||||||
Sbjct: 7323171 atttgccttcttgaagatctcagcctgggaagaagcagcgccatcagaggtcatggccac 7323230

                                                                           
Query: 141     gacgatgcagtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagtt 200
               ||||||||| ||||| ||||| ||||| ||||| ||||| || |||||||||||||||||
Sbjct: 7323231 gacgatgcaatccttaacctgttgggtggtaaaagggaatttcttgttcacaatggagtt 7323290

                                                                           
Query: 201     gaggtatgcagctgccccctcgcgtatcagggcgccaataccatcagttctagtgtttga 260
               ||||||||||||||| |||||||| | ||| || ||| |||||||||||| |||||||||
Sbjct: 7323291 gaggtatgcagctgctccctcgcggagcagagcaccagtaccatcagttccagtgtttga 7323350

                                                                           
Query: 261     gagtgcatcatgcatatttcctagcttcttgccacctatcatactgcatgcagcaccaaa 320
                ||||||||||| | |||| ||||||||||||||   |||| |||||| |||| ||| | 
Sbjct: 7323351 aagtgcatcatgaagattttctagcttcttgccagtgatcaaactgcaagcagtaccgag 7323410

                                                                           
Query: 321     tgtcttgccgatgttgccaagggacccaatagctgcaattatagcgtctgggtgattctt 380
               ||||||||| |||| ||||||||||||||||||||  || ||| | ||||| || |||||
Sbjct: 7323411 tgtcttgccaatgtcgccaagggacccaatagctgagatgataacatctggatggttctt 7323470

                   
Query: 381     ccag 384
               ||||
Sbjct: 7323471 ccag 7323474



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                           
Query: 441     aggtgtacttggggtgctcggtgtagtgccgtaagatggcgtcggtgtagtgccataaga 500
               |||||| || |||||||| ||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 7323610 aggtgtgctgggggtgcttggtgtcgtgccgtaagatggtgttggtgtagtgccgtaaga 7323669

                                          
Query: 501     tggcgtcngtgtagtgccgtaagatgg 527
               ||| ||  |||||||||| ||||||||
Sbjct: 7323670 tggtgttggtgtagtgccataagatgg 7323696



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                           
Query: 460     ggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcngtgtagtgccg 519
               |||||||||||||||||||| || |||||||||||||||||||| ||  |||||| ||||
Sbjct: 7323653 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatggtgttggtgtagagccg 7323712

                   
Query: 520     taag 523
               ||||
Sbjct: 7323713 taag 7323716



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 535     gttggtgtagtaccgtaagttggtgtcggtgt 566
               ||||||||||| ||||||| |||||| |||||
Sbjct: 7323650 gttggtgtagtgccgtaagatggtgttggtgt 7323681
to top
>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score =  262 bits (132), Expect = 1e-66
 Identities = 261/304 (85%)
 Strand = Plus / Plus

                                                                         
Query: 81    atttgccttcttgaagaccccagcttgggcagaagcagcactatcagaggtcgcggccac 140
             ||||||||||||||||| | |||| |||| ||||||||| | ||||||||||  ||||||
Sbjct: 98979 atttgccttcttgaagatctcagcctgggaagaagcagcgccatcagaggtcatggccac 99038

                                                                         
Query: 141   gacgatgcagtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagtt 200
             ||||||||| ||||| ||||| ||||| ||||| ||||| || |||||||||||||||||
Sbjct: 99039 gacgatgcaatccttaacctgttgggtggtaaaagggaatttcttgttcacaatggagtt 99098

                                                                         
Query: 201   gaggtatgcagctgccccctcgcgtatcagggcgccaataccatcagttctagtgtttga 260
             ||||||||||||||| |||||||| | ||| || ||| |||||||||||| |||||||||
Sbjct: 99099 gaggtatgcagctgctccctcgcggagcagagcaccagtaccatcagttccagtgtttga 99158

                                                                         
Query: 261   gagtgcatcatgcatatttcctagcttcttgccacctatcatactgcatgcagcaccaaa 320
              ||||||||||| | |||| ||||||||||||||   |||| |||||| |||| ||| | 
Sbjct: 99159 aagtgcatcatgaagattttctagcttcttgccagtgatcaaactgcaagcagtaccgag 99218

                                                                         
Query: 321   tgtcttgccgatgttgccaagggacccaatagctgcaattatagcgtctgggtgattctt 380
             ||||||||| |||| ||||||||||||||||||||  || ||| | ||||| || |||||
Sbjct: 99219 tgtcttgccaatgtcgccaagggacccaatagctgagatgataacatctggatggttctt 99278

                 
Query: 381   ccag 384
             ||||
Sbjct: 99279 ccag 99282



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                         
Query: 441   aggtgtacttggggtgctcggtgtagtgccgtaagatggcgtcggtgtagtgccataaga 500
             |||||| || |||||||| ||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 99418 aggtgtgctgggggtgcttggtgtcgtgccgtaagatggtgttggtgtagtgccgtaaga 99477

                                        
Query: 501   tggcgtcngtgtagtgccgtaagatgg 527
             ||| ||  |||||||||| ||||||||
Sbjct: 99478 tggtgttggtgtagtgccataagatgg 99504



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                         
Query: 460   ggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcngtgtagtgccg 519
             |||||||||||||||||||| || |||||||||||||||||||| ||  |||||| ||||
Sbjct: 99461 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatggtgttggtgtagagccg 99520

                 
Query: 520   taag 523
             ||||
Sbjct: 99521 taag 99524



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 535   gttggtgtagtaccgtaagttggtgtcggtgt 566
             ||||||||||| ||||||| |||||| |||||
Sbjct: 99458 gttggtgtagtgccgtaagatggtgttggtgt 99489
to top
>dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H10, full
           insert sequence
          Length = 377

 Score =  218 bits (110), Expect = 2e-53
 Identities = 188/214 (87%)
 Strand = Plus / Minus

                                                                       
Query: 81  atttgccttcttgaagaccccagcttgggcagaagcagcactatcagaggtcgcggccac 140
           ||||||||||||||||| | |||| |||| ||||||||| | ||||||||||  ||||||
Sbjct: 222 atttgccttcttgaagatctcagcctgggaagaagcagcgccatcagaggtcatggccac 163

                                                                       
Query: 141 gacgatgcagtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagtt 200
           ||||||||| ||||| ||||| ||||| ||||| ||||| || |||||||||||||||||
Sbjct: 162 gacgatgcaatccttaacctgttgggtggtaaaagggaatttcttgttcacaatggagtt 103

                                                                       
Query: 201 gaggtatgcagctgccccctcgcgtatcagggcgccaataccatcagttctagtgtttga 260
           ||||||||||||||| |||||||| | ||| || ||| |||||||||||| |||||||||
Sbjct: 102 gaggtatgcagctgctccctcgcggagcagagcaccagtaccatcagttccagtgtttga 43

                                             
Query: 261 gagtgcatcatgcatatttcctagcttcttgcca 294
            ||||||||||| | |||| ||||||||||||||
Sbjct: 42  aagtgcatcatgaagattttctagcttcttgcca 9
to top
>ref|NM_191846.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1944

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 150  gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 203
            ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 1848 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 1795
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 150      gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 203
                ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 30289367 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 30289314
to top
>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0042A10
          Length = 146840

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 150   gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 203
             ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 77686 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 77633
to top
>dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036E12, full
            insert sequence
          Length = 2368

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 150  gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 203
            ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 1937 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 1884
to top
>gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 398   caatgaatccatgcttctttgga 420
             |||||||||||||||||||||||
Sbjct: 29046 caatgaatccatgcttctttgga 29024
to top
>gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 398   caatgaatccatgcttctttgga 420
             |||||||||||||||||||||||
Sbjct: 29046 caatgaatccatgcttctttgga 29024
to top
>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 398   caatgaatccatgcttctttgga 420
             |||||||||||||||||||||||
Sbjct: 43669 caatgaatccatgcttctttgga 43691
to top
>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 398   caatgaatccatgcttctttgga 420
             |||||||||||||||||||||||
Sbjct: 91407 caatgaatccatgcttctttgga 91385
to top
>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 424    gcagggacttcatgggaaggt 444
              |||||||||||||||||||||
Sbjct: 115193 gcagggacttcatgggaaggt 115173
to top
>gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly protein (HydG)
           mRNA, complete cds
          Length = 1704

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 440 aaggtgtacttggggtgctcg 460
           |||||||||||||||||||||
Sbjct: 695 aaggtgtacttggggtgctcg 675
to top
>ref|XM_451567.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g predicted mRNA
          Length = 1185

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 168 tgtaaatgggaacttgttgtt 188
           |||||||||||||||||||||
Sbjct: 360 tgtaaatgggaacttgttgtt 380
to top
>gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete sequence
          Length = 176448

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 245   cagttctagtgtttgagagtgcatc 269
             ||||||||| |||||||||||||||
Sbjct: 18472 cagttctagagtttgagagtgcatc 18448



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 245   cagttctagtgtttgagagtgcatc 269
             ||||||||| |||||||||||||||
Sbjct: 17254 cagttctagagtttgagagtgcatc 17278
to top
>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 1320834

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   tgtaaatgggaacttgttgtt 188
             |||||||||||||||||||||
Sbjct: 64643 tgtaaatgggaacttgttgtt 64663
to top
>gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome 13, complete sequence
          Length = 188633

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 268    tcatgcatatttcctagcttc 288
              |||||||||||||||||||||
Sbjct: 108420 tcatgcatatttcctagcttc 108440
to top
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 245    cagttctagtgtttgagagtgcatc 269
              ||||||||| |||||||||||||||
Sbjct: 627744 cagttctagagtttgagagtgcatc 627720



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 245    cagttctagtgtttgagagtgcatc 269
              ||||||||| |||||||||||||||
Sbjct: 626526 cagttctagagtttgagagtgcatc 626550
to top
>gb|AC163358.3| Mus musculus BAC clone RP23-11M14 from chromosome 14, complete
            sequence
          Length = 208634

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   aggaagaaattagccagaaa 51
            ||||||||||||||||||||
Sbjct: 7121 aggaagaaattagccagaaa 7102
to top
>gb|AC147570.3| Homo sapiens BAC clone RP11-1176F21 from UL, complete sequence
          Length = 191237

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     aggaagaaattagccagaaa 51
              ||||||||||||||||||||
Sbjct: 166173 aggaagaaattagccagaaa 166154
to top
>gb|AC140208.2| Mus musculus BAC clone RP24-469B21 from chromosome 14, complete sequence
          Length = 200350

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     aggaagaaattagccagaaa 51
              ||||||||||||||||||||
Sbjct: 191119 aggaagaaattagccagaaa 191100
to top
>gb|AC105457.1| Homo sapiens chromosome 21 clone RP11-271G11 map p11-q21.1, complete
             sequence
          Length = 164841

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aggaagaaattagccagaaa 51
             ||||||||||||||||||||
Sbjct: 25036 aggaagaaattagccagaaa 25055
to top
>gb|AC124688.3| Mus musculus BAC clone RP24-484D9 from chromosome 14, complete sequence
          Length = 141678

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    aggaagaaattagccagaaa 51
             ||||||||||||||||||||
Sbjct: 12634 aggaagaaattagccagaaa 12615
to top
>emb|CT025841.2| Medicago truncatula chromosome 5 clone mth2-131j21, COMPLETE SEQUENCE
          Length = 122251

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   ggttgtaaatgggaacttgt 184
             ||||||||||||||||||||
Sbjct: 48940 ggttgtaaatgggaacttgt 48921
to top
>emb|AL512404.15| Human DNA sequence from clone RP11-328C7 on chromosome 6, complete
            sequence
          Length = 40204

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   gaagaaattagccagaaaca 53
            ||||||||||||||||||||
Sbjct: 1676 gaagaaattagccagaaaca 1657
to top
>gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydrogenase E (aadhE1)
            gene, partial cds
          Length = 3207

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  atgcagctgccccctcgcgt 225
            ||||||||||||||||||||
Sbjct: 1719 atgcagctgccccctcgcgt 1738
to top
>gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete sequence
          Length = 104879

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 553   gttggtgtcggtgtcgggtt 572
             ||||||||||||||||||||
Sbjct: 15867 gttggtgtcggtgtcgggtt 15886
to top
>emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, complete sequence
          Length = 158249

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    tcatactgcatgcagcacca 318
              ||||||||||||||||||||
Sbjct: 114572 tcatactgcatgcagcacca 114553
to top
>gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, complete sequence
          Length = 17211

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   cagggacttcatgggaaggt 444
             ||||||||||||||||||||
Sbjct: 10827 cagggacttcatgggaaggt 10846
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 130     gtcgcggccacgacgatgca 149
               ||||||||||||||||||||
Sbjct: 5059884 gtcgcggccacgacgatgca 5059903
to top
>gb|AC000030.5| Homo sapiens Chromosome 12 Cosmid Clone c200f3, complete sequence
          Length = 35014

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   gaagaaattagccagaaaca 53
            ||||||||||||||||||||
Sbjct: 7563 gaagaaattagccagaaaca 7582
to top
>gb|AC006112.4| Homo sapiens chromosome 16 clone RP11-472H7, complete sequence
          Length = 191158

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 3      agatagcatcaatnagaaaaatg 25
              ||||||||||||| |||||||||
Sbjct: 121798 agatagcatcaatgagaaaaatg 121820
to top
>dbj|BS000003.1| Pan troglodytes chromosome 22 clone:PTB-084L06, map 22, complete
              sequences
          Length = 183187

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     aggaagaaattagccagaaa 51
              ||||||||||||||||||||
Sbjct: 120759 aggaagaaattagccagaaa 120778
to top
>emb|AL163204.2|HS21C004 Homo sapiens chromosome 21 segment HS21C004
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     aggaagaaattagccagaaa 51
              ||||||||||||||||||||
Sbjct: 221301 aggaagaaattagccagaaa 221320
to top
>gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 2503

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 395 atccaatgaatccatgcttctttg 418
           ||||||||||||| ||||||||||
Sbjct: 678 atccaatgaatccctgcttctttg 701
to top
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 397     ccaatgaatccatgcttctt 416
               ||||||||||||||||||||
Sbjct: 2827485 ccaatgaatccatgcttctt 2827466
to top
>gb|AC155302.2| Mus musculus BAC clone RP24-227A11 from chromosome 13, complete
             sequence
          Length = 152447

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    gaagaccccagcttgggcag 112
             ||||||||||||||||||||
Sbjct: 61081 gaagaccccagcttgggcag 61062
to top
>dbj|AP001466.1| Homo sapiens genomic DNA, chromosome 21q11.1, clone:R111H17,
             D21S290-LL56 region, complete sequence
          Length = 115693

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aggaagaaattagccagaaa 51
             ||||||||||||||||||||
Sbjct: 12576 aggaagaaattagccagaaa 12595


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,325,600
Number of Sequences: 3902068
Number of extensions: 4325600
Number of successful extensions: 66285
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66140
Number of HSP's gapped (non-prelim): 128
length of query: 574
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 551
effective length of database: 17,143,297,704
effective search space: 9445957034904
effective search space used: 9445957034904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top