ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1m19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HMSH_DROME (Q03372) Muscle segmentation homeobox (Protein drop) ... 28 6.6
2ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disinteg... 28 8.6

>HMSH_DROME (Q03372) Muscle segmentation homeobox (Protein drop) (Protein msh)|
          Length = 515

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
 Frame = +1

Query: 1   GPNTLPVNITFGSISTIYIHNSTMINCTYTPSITLARA*FKT*YSS*ALFINHCHRL--D 174
           G N    N+T  +++ +   +   +N   +P+            S  AL + H   L   
Sbjct: 48  GSNMSSGNMTSSNLTNLSPSHPAGLNALASPT------------SPSALLLAHQQHLLQQ 95

Query: 175 YQQH*SGKGRETQQYKRKI*LLMLFKVSQSAIHLHQLXSRLNG---CSS*ADFRLRFP 339
           +QQH     ++ QQ +++   L L  V   A HLH+  SRL+     S  AD R R P
Sbjct: 96  HQQH-----QQQQQQQQQAAALQLAAVHPPAHHLHKTTSRLSNFSVASLLADTRPRTP 148



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>ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 20)
          Length = 726

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 141 LARVLGFELGPS*SNRWCICTIDHCAVMYVY 49
           L   LG  LG     +WC+C +  C +M+ Y
Sbjct: 340 LGHELGHNLGMQHDTQWCVCELQWC-IMHAY 369


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,838,910
Number of Sequences: 219361
Number of extensions: 781279
Number of successful extensions: 1383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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