ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32e20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ133278.1|HVU133278 Hordeum vulgare mRNA for hordeum vulgar... 1078 0.0
2emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H 640 e-180
3gb|BT018842.1| Zea mays clone EL01N0553E10.d mRNA sequence 280 5e-72
4dbj|AK104884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 274 3e-70
5dbj|AK070329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 274 3e-70
6dbj|AK059501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 274 3e-70
7gb|AY109358.1| Zea mays CL2088_1 mRNA sequence 272 1e-69
8gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome... 161 3e-36
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
10ref|NM_106289.3| Arabidopsis thaliana dolichyl-diphosphooligosac... 42 1.9
11gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
12gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome 42 1.9
13gb|AF083780.1| Arabidopsis thaliana clone sps806 unknown mRNA 42 1.9
14gb|AC126786.22| Medicago truncatula clone mth2-8c2, complete seq... 42 1.9
15emb|X68197.1|OSTHLP O.sativa mRNA for thaumatin-like protein 42 1.9
16emb|AL645626.10| Mouse DNA sequence from clone RP23-397J5 on chr... 42 1.9
17gb|AY139776.1| Arabidopsis thaliana At1g76400/F15M4_10 mRNA, com... 42 1.9
18gb|AY128779.1| Arabidopsis thaliana putative dolichyl-diphosphoo... 42 1.9
19gb|AC144482.11| Medicago truncatula clone mth2-10p1, complete se... 42 1.9
20gb|AY081297.1| Arabidopsis thaliana putative dolichyl-diphosphoo... 42 1.9
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
22dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
23emb|BX814207.1|CNS0AE1U Arabidopsis thaliana Full-length cDNA Co... 42 1.9
24gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15... 42 1.9
25gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome 42 1.9
26dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
27dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
28dbj|AK099946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
29dbj|AK069182.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
30gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
31gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 42 1.9
32gb|DQ238866.1| Halophage AAJ-2005 isolate HalPHG1, partial genome 42 1.9
33gb|AC150558.1| Drosophila melanogaster clone BACR01N08, complete... 40 7.5
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.5
35gb|AC122901.4| Mus musculus BAC clone RP23-40D21 from chromosome... 40 7.5
36emb|AL136991.26| Human DNA sequence from clone RP11-189J1 on chr... 40 7.5
37gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
38gb|AC093177.1| Drosophila melanogaster, chromosome 2L, region 36... 40 7.5
39gb|AC092398.1|AC092398 Drosophila melanogaster, chromosome 2L, r... 40 7.5
40dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
41gb|AC018685.12| Homo sapiens BAC clone RP11-455M16 from 2, compl... 40 7.5
42gb|AE003651.2| Drosophila melanogaster chromosome 2L, section 60... 40 7.5
43dbj|AP002800.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.5
44gb|U13988.1|PCU13988 Peanut chlorotic streak caulimovirus, compl... 40 7.5
45gb|M33824.1|TRBWRATATB T.brucei WRATat B variant surface glycopr... 40 7.5 
>emb|AJ133278.1|HVU133278 Hordeum vulgare mRNA for hordeum vulgare (barley) ribophorin I,
           partial
          Length = 989

 Score = 1078 bits (544), Expect = 0.0
 Identities = 553/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcttatatcaagttacaacggtctactgataaccttagcctcaggaactaggataacggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 gcttatatcaagttacaacggtctactgataaccttagcctcaggaactaggataacggg 882

                                                                       
Query: 61  cctaccaacacaacatctacacacaaagtggagatgacattcagcctaatcgctaacgat 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 gctaccaacacaacatctacacacaaagtggagatgacattcagcctaatcgctaacgat 822

                                                                       
Query: 121 ataagatgagaccggactcgctcatatctcgctaaggtactctagaagagattcgacctc 180
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ataagatgagacctgacttgctcatatctcgctaaggtactctagaagagattcgacctc 762

                                                                       
Query: 181 ttgcctcagcgcagcgatcttctgctgctgggaagcaatccggttttctatgtcttgccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ttgcctcagcgcagcgatcttctgctgctgggaagcaatccggttttctatgtcttgccc 702

                                                                       
Query: 241 gcgctgcttcttctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gcgctgcttcttctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctg 642

                                                                       
Query: 301 catctctctctccttcgcaaccaggtcctctagctttggccatatcagataagactgagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 catctctctctccttcgcaaccaggtcctctagctttggccatatcagataagactgagg 582

                                                                       
Query: 361 ggatgactgtacagataacaacagtggcttcaactcttttgctaattccttaaactgtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggatgactgtacagataacaacagtggcttcaactcttttgctaattccttaaactgtgc 522

                                                                       
Query: 421 atcagcggctttacgagttgctttgcatgattttgtgtctccagtcctagacaaatcgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atcagcggctttacgagttgctttgcatgattttgtgtctccagtcctagacaaatcgtg 462

                                                                       
Query: 481 caatgatatctctagcttatcatgaacagctaagcactgctcaaagataccctggatctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 caatgatatctctagcttatcatgaacagctaagcactgctcaaagataccctggatctg 402

                           
Query: 541 ctggacagtggcttgc 556
           ||||||||||||||||
Sbjct: 401 ctggacagtggcttgc 386
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>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
          Length = 59748

 Score =  640 bits (323), Expect = e-180
 Identities = 332/335 (99%)
 Strand = Plus / Minus

                                                                         
Query: 1     gcttatatcaagttacaacggtctactgataaccttagcctcaggaactaggataacggg 60
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 22329 gcttatatcaagttacaacggtctactgataaccttagcctcaggaactaggatgacggg 22270

                                                                         
Query: 61    cctaccaacacaacatctacacacaaagtggagatgacattcagcctaatcgctaacgat 120
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22269 gctaccaacacaacatctacacacaaagtggagatgacattcagcctaatcgctaacgat 22210

                                                                         
Query: 121   ataagatgagaccggactcgctcatatctcgctaaggtactctagaagagattcgacctc 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22209 ataagatgagaccggactcgctcatatctcgctaaggtactctagaagagattcgacctc 22150

                                                                         
Query: 181   ttgcctcagcgcagcgatcttctgctgctgggaagcaatccggttttctatgtcttgccc 240
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22149 ttgcctgagcgcagcgatcttctgctgctgggaagcaatccggttttctatgtcttgccc 22090

                                                                         
Query: 241   gcgctgcttcttctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctg 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22089 gcgctgcttcttctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctg 22030

                                                
Query: 301   catctctctctccttcgcaaccaggtcctctagct 335
             |||||||||||||||||||||||||||||||||||
Sbjct: 22029 catctctctctccttcgcaaccaggtcctctagct 21995



 Score =  442 bits (223), Expect = e-121
 Identities = 223/223 (100%)
 Strand = Plus / Minus

                                                                         
Query: 334   ctttggccatatcagataagactgaggggatgactgtacagataacaacagtggcttcaa 393
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21824 ctttggccatatcagataagactgaggggatgactgtacagataacaacagtggcttcaa 21765

                                                                         
Query: 394   ctcttttgctaattccttaaactgtgcatcagcggctttacgagttgctttgcatgattt 453
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21764 ctcttttgctaattccttaaactgtgcatcagcggctttacgagttgctttgcatgattt 21705

                                                                         
Query: 454   tgtgtctccagtcctagacaaatcgtgcaatgatatctctagcttatcatgaacagctaa 513
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21704 tgtgtctccagtcctagacaaatcgtgcaatgatatctctagcttatcatgaacagctaa 21645

                                                        
Query: 514   gcactgctcaaagataccctggatctgctggacagtggcttgc 556
             |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21644 gcactgctcaaagataccctggatctgctggacagtggcttgc 21602
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>gb|BT018842.1| Zea mays clone EL01N0553E10.d mRNA sequence
          Length = 2177

 Score =  280 bits (141), Expect = 5e-72
 Identities = 348/417 (83%)
 Strand = Plus / Minus

                                                                        
Query: 140  gctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcgcagcgatc 199
            ||||| ||||| |||| |||||||| ||||||||| ||||| |||||||| ||||| || 
Sbjct: 1926 gctcaaatctcactaatgtactctaaaagagattcaacctcctgcctcagggcagcaatt 1867

                                                                        
Query: 200  ttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttcttctcgaag 259
            |||||||||||  ||||||||| ||| ||||  |||||||||||| |||||||||| |||
Sbjct: 1866 ttctgctgctgcaaagcaatcctgttctctacatcttgcccgcgcagcttcttctcaaag 1807

                                                                        
Query: 260  ctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctctccttcgca 319
            ||||| || || |||| |||||| | ||||||||||||||||||||||||||||||  | 
Sbjct: 1806 ctgtcgacaacggtggaatgccttgtcatgagcttctcctgcatctctctctcctttacg 1747

                                                                        
Query: 320  accaggtcctctagctttggccatatcagataagactgaggggatgactgtacagataac 379
            | || |||||||| ||||||| ||||| |||||||||| || |||||||||| ||    |
Sbjct: 1746 atcaagtcctctacctttggcaatatctgataagactggggagatgactgtagagtcgcc 1687

                                                                        
Query: 380  aacagtggcttcaactcttttgctaattccttaaactgtgcatcagcggctttacgagtt 439
            |||||||||||||  ||||| | ||  ||||||||||| |  ||||| |||||||||| |
Sbjct: 1686 aacagtggcttcagatctttcgatagctccttaaactgcgtgtcagcagctttacgagct 1627

                                                                        
Query: 440  gctttgcatgattttgtgtctccagtcctagacaaatcgtgcaatgatatctctagctta 499
            || ||||| || |   ||||||| ||||||||||||||  |||||||   ||| || |||
Sbjct: 1626 gccttgcaagactgaatgtctcctgtcctagacaaatcccgcaatgaggcctccagttta 1567

                                                                     
Query: 500  tcatgaacagctaagcactgctcaaagataccctggatctgctggacagtggcttgc 556
            |||||||| |||||||| |||||||||||||||||||| | ||| ||||| ||||||
Sbjct: 1566 tcatgaactgctaagcattgctcaaagataccctggattttctgaacagttgcttgc 1510
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>dbj|AK104884.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-A05, full
           insert sequence
          Length = 886

 Score =  274 bits (138), Expect = 3e-70
 Identities = 276/322 (85%)
 Strand = Plus / Minus

                                                                       
Query: 132 ccggactcgctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcg 191
           ||||| ||||||| ||||| || | |||||||| |||||||||||||||||||||||| |
Sbjct: 645 ccggattcgctcagatctcactgatgtactctaaaagagattcgacctcttgcctcaggg 586

                                                                       
Query: 192 cagcgatcttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttct 251
           |||| |  ||||||||||||| |||||||| ||| || |  |||||||| |||  |||||
Sbjct: 585 cagcaactttctgctgctgggcagcaatcctgttctccacatcttgccctcgcaacttct 526

                                                                       
Query: 252 tctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctct 311
           | || |||||||||||||| |||| |||||| | ||||||||| ||||||| ||||||||
Sbjct: 525 tttcaaagctgtcaaccacagtggaatgccttgtcatgagcttatcctgcaactctctct 466

                                                                       
Query: 312 ccttcgcaaccaggtcctctagctttggccatatcagataagactgaggggatgactgta 371
           |||| |||||||  ||||||| ||||||||||||| | |||||||||| ||||||||| |
Sbjct: 465 ccttggcaaccaattcctctacctttggccatatctggtaagactgagaggatgactgca 406

                                                                       
Query: 372 cagataacaacagtggcttcaactcttttgctaattccttaaactgtgcatcagcggctt 431
             |||  ||||| |||||||||||||||||||||||||||||||||||||||||| |  |
Sbjct: 405 gggatgtcaacaatggcttcaactcttttgctaattccttaaactgtgcatcagctgtct 346

                                 
Query: 432 tacgagttgctttgcatgattt 453
           ||||||   |||||||||||||
Sbjct: 345 tacgagccactttgcatgattt 324
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>dbj|AK070329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048G03, full
            insert sequence
          Length = 2163

 Score =  274 bits (138), Expect = 3e-70
 Identities = 276/322 (85%)
 Strand = Plus / Minus

                                                                        
Query: 132  ccggactcgctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcg 191
            ||||| ||||||| ||||| || | |||||||| |||||||||||||||||||||||| |
Sbjct: 1921 ccggattcgctcagatctcactgatgtactctaaaagagattcgacctcttgcctcaggg 1862

                                                                        
Query: 192  cagcgatcttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttct 251
            |||| |  ||||||||||||| |||||||| ||| || |  |||||||| |||  |||||
Sbjct: 1861 cagcaactttctgctgctgggcagcaatcctgttctccacatcttgccctcgcaacttct 1802

                                                                        
Query: 252  tctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctct 311
            | || |||||||||||||| |||| |||||| | ||||||||| ||||||| ||||||||
Sbjct: 1801 tttcaaagctgtcaaccacagtggaatgccttgtcatgagcttatcctgcaactctctct 1742

                                                                        
Query: 312  ccttcgcaaccaggtcctctagctttggccatatcagataagactgaggggatgactgta 371
            |||| |||||||  ||||||| ||||||||||||| | |||||||||| ||||||||| |
Sbjct: 1741 ccttggcaaccaattcctctacctttggccatatctggtaagactgagaggatgactgca 1682

                                                                        
Query: 372  cagataacaacagtggcttcaactcttttgctaattccttaaactgtgcatcagcggctt 431
              |||  ||||| |||||||||||||||||||||||||||||||||||||||||| |  |
Sbjct: 1681 gggatgtcaacaatggcttcaactcttttgctaattccttaaactgtgcatcagctgtct 1622

                                  
Query: 432  tacgagttgctttgcatgattt 453
            ||||||   |||||||||||||
Sbjct: 1621 tacgagccactttgcatgattt 1600
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>dbj|AK059501.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A03, full
           insert sequence
          Length = 886

 Score =  274 bits (138), Expect = 3e-70
 Identities = 276/322 (85%)
 Strand = Plus / Minus

                                                                       
Query: 132 ccggactcgctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcg 191
           ||||| ||||||| ||||| || | |||||||| |||||||||||||||||||||||| |
Sbjct: 645 ccggattcgctcagatctcactgatgtactctaaaagagattcgacctcttgcctcaggg 586

                                                                       
Query: 192 cagcgatcttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttct 251
           |||| |  ||||||||||||| |||||||| ||| || |  |||||||| |||  |||||
Sbjct: 585 cagcaactttctgctgctgggcagcaatcctgttctccacatcttgccctcgcaacttct 526

                                                                       
Query: 252 tctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctct 311
           | || |||||||||||||| |||| |||||| | ||||||||| ||||||| ||||||||
Sbjct: 525 tttcaaagctgtcaaccacagtggaatgccttgtcatgagcttatcctgcaactctctct 466

                                                                       
Query: 312 ccttcgcaaccaggtcctctagctttggccatatcagataagactgaggggatgactgta 371
           |||| |||||||  ||||||| ||||||||||||| | |||||||||| ||||||||| |
Sbjct: 465 ccttggcaaccaattcctctacctttggccatatctggtaagactgagaggatgactgca 406

                                                                       
Query: 372 cagataacaacagtggcttcaactcttttgctaattccttaaactgtgcatcagcggctt 431
             |||  ||||| |||||||||||||||||||||||||||||||||||||||||| |  |
Sbjct: 405 gggatgtcaacaatggcttcaactcttttgctaattccttaaactgtgcatcagctgtct 346

                                 
Query: 432 tacgagttgctttgcatgattt 453
           ||||||   |||||||||||||
Sbjct: 345 tacgagccactttgcatgattt 324
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>gb|AY109358.1| Zea mays CL2088_1 mRNA sequence
          Length = 1615

 Score =  272 bits (137), Expect = 1e-69
 Identities = 347/417 (83%)
 Strand = Plus / Plus

                                                                       
Query: 140 gctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcgcagcgatc 199
           ||||| ||||| |||| |||||||| ||||||||| ||||| |||||||| ||||| || 
Sbjct: 283 gctcaaatctcactaatgtactctaaaagagattcaacctcctgcctcagggcagcaatt 342

                                                                       
Query: 200 ttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttcttctcgaag 259
           |||||||||||  ||||||||| ||| ||||  |||||||||||| |||||||||| |||
Sbjct: 343 ttctgctgctgcaaagcaatcctgttctctacatcttgcccgcgcagcttcttctcaaag 402

                                                                       
Query: 260 ctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctctccttcgca 319
           ||||| || || |||| |||||| | ||||||||||||||||||||||||||||||  | 
Sbjct: 403 ctgtcgacaacggtggaatgccttgtcatgagcttctcctgcatctctctctcctttacg 462

                                                                       
Query: 320 accaggtcctctagctttggccatatcagataagactgaggggatgactgtacagataac 379
           | || |||||||| ||||||| ||||| |||||||||| || |||||||||| ||    |
Sbjct: 463 atcaagtcctctacctttggcaatatctgataagactggggagatgactgtagagtcgcc 522

                                                                       
Query: 380 aacagtggcttcaactcttttgctaattccttaaactgtgcatcagcggctttacgagtt 439
           |||||||||||||  ||||| | ||  ||||||||||| |  ||||| |||||||||| |
Sbjct: 523 aacagtggcttcagatctttcgatagctccttaaactgcgtgtcagcagctttacgagct 582

                                                                       
Query: 440 gctttgcatgattttgtgtctccagtcctagacaaatcgtgcaatgatatctctagctta 499
           || ||||| || |   ||||||| ||||||||||||||  |||| ||   ||| || |||
Sbjct: 583 gccttgcaagactgaatgtctcctgtcctagacaaatcccgcaacgaggcctccagttta 642

                                                                    
Query: 500 tcatgaacagctaagcactgctcaaagataccctggatctgctggacagtggcttgc 556
           |||||||| |||||||| |||||||||||||||||||| | ||| ||||| ||||||
Sbjct: 643 tcatgaactgctaagcattgctcaaagataccctggattttctgaacagttgcttgc 699
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>gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OJ1057_C01, complete sequence
          Length = 142752

 Score =  161 bits (81), Expect = 3e-36
 Identities = 171/201 (85%)
 Strand = Plus / Minus

                                                                         
Query: 132   ccggactcgctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcg 191
             ||||| ||||||| ||||| || | |||||||| |||||||||||||||||||||||| |
Sbjct: 84058 ccggattcgctcagatctcactgatgtactctaaaagagattcgacctcttgcctcaggg 83999

                                                                         
Query: 192   cagcgatcttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttct 251
             |||| |  ||||||||||||| |||||||| ||| || |  |||||||| |||  |||||
Sbjct: 83998 cagcaactttctgctgctgggcagcaatcctgttctccacatcttgccctcgcaacttct 83939

                                                                         
Query: 252   tctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctct 311
             | || |||||||||||||| |||| |||||| | ||||||||| ||||||| ||||||||
Sbjct: 83938 tttcaaagctgtcaaccacagtggaatgccttgtcatgagcttatcctgcaactctctct 83879

                                  
Query: 312   ccttcgcaaccaggtcctcta 332
             |||| |||||||  |||||||
Sbjct: 83878 ccttggcaaccaattcctcta 83858



 Score =  119 bits (60), Expect = 1e-23
 Identities = 105/120 (87%)
 Strand = Plus / Minus

                                                                         
Query: 334   ctttggccatatcagataagactgaggggatgactgtacagataacaacagtggcttcaa 393
             ||||||||||||| | |||||||||| ||||||||| |  |||  ||||| |||||||||
Sbjct: 83696 ctttggccatatctggtaagactgagaggatgactgcagggatgtcaacaatggcttcaa 83637

                                                                         
Query: 394   ctcttttgctaattccttaaactgtgcatcagcggctttacgagttgctttgcatgattt 453
             ||||||||||||||||||||||||||||||||| |  |||||||   |||||||||||||
Sbjct: 83636 ctcttttgctaattccttaaactgtgcatcagctgtcttacgagccactttgcatgattt 83577
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  161 bits (81), Expect = 3e-36
 Identities = 171/201 (85%)
 Strand = Plus / Minus

                                                                            
Query: 132      ccggactcgctcatatctcgctaaggtactctagaagagattcgacctcttgcctcagcg 191
                ||||| ||||||| ||||| || | |||||||| |||||||||||||||||||||||| |
Sbjct: 13400595 ccggattcgctcagatctcactgatgtactctaaaagagattcgacctcttgcctcaggg 13400536

                                                                            
Query: 192      cagcgatcttctgctgctgggaagcaatccggttttctatgtcttgcccgcgctgcttct 251
                |||| |  ||||||||||||| |||||||| ||| || |  |||||||| |||  |||||
Sbjct: 13400535 cagcaactttctgctgctgggcagcaatcctgttctccacatcttgccctcgcaacttct 13400476

                                                                            
Query: 252      tctcgaagctgtcaaccaccgtggcatgcctcgccatgagcttctcctgcatctctctct 311
                | || |||||||||||||| |||| |||||| | ||||||||| ||||||| ||||||||
Sbjct: 13400475 tttcaaagctgtcaaccacagtggaatgccttgtcatgagcttatcctgcaactctctct 13400416

                                     
Query: 312      ccttcgcaaccaggtcctcta 332
                |||| |||||||  |||||||
Sbjct: 13400415 ccttggcaaccaattcctcta 13400395



 Score =  119 bits (60), Expect = 1e-23
 Identities = 105/120 (87%)
 Strand = Plus / Minus

                                                                            
Query: 334      ctttggccatatcagataagactgaggggatgactgtacagataacaacagtggcttcaa 393
                ||||||||||||| | |||||||||| ||||||||| |  |||  ||||| |||||||||
Sbjct: 13400233 ctttggccatatctggtaagactgagaggatgactgcagggatgtcaacaatggcttcaa 13400174

                                                                            
Query: 394      ctcttttgctaattccttaaactgtgcatcagcggctttacgagttgctttgcatgattt 453
                ||||||||||||||||||||||||||||||||| |  |||||||   |||||||||||||
Sbjct: 13400173 ctcttttgctaattccttaaactgtgcatcagctgtcttacgagccactttgcatgattt 13400114
to top
>ref|NM_106289.3| Arabidopsis thaliana dolichyl-diphosphooligosaccharide-protein
            glycotransferase/ oligosaccharyl transferase AT1G76400
            mRNA, complete cds
          Length = 2364

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 196  gatcttctgctgctgggaagcaatccggttttc 228
            |||||| |||||||| ||||| |||||||||||
Sbjct: 1829 gatcttttgctgctgagaagcgatccggttttc 1797
to top
>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone OSJNBb0003F09,
              complete sequence
          Length = 159600

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 282    tcgccatgagcttctcctgca 302
              |||||||||||||||||||||
Sbjct: 114963 tcgccatgagcttctcctgca 114943



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 282    tcgccatgagcttctcctgca 302
              |||||||||||||||||||||
Sbjct: 105752 tcgccatgagcttctcctgca 105732



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 282   tcgccatgagcttctcctgca 302
             |||||||||||||||||||||
Sbjct: 71929 tcgccatgagcttctcctgca 71909
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>gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome
          Length = 1044459

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 348    gataagactgaggggatgact 368
              |||||||||||||||||||||
Sbjct: 977549 gataagactgaggggatgact 977569
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>gb|AF083780.1| Arabidopsis thaliana clone sps806 unknown mRNA
          Length = 1026

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 196 gatcttctgctgctgggaagcaatccggttttc 228
           |||||| |||||||| ||||| |||||||||||
Sbjct: 853 gatcttttgctgctgagaagcgatccggttttc 821
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>gb|AC126786.22| Medicago truncatula clone mth2-8c2, complete sequence
          Length = 115134

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 284   gccatgagcttctcctgcatctctctctccttcgcaa 320
             ||||| |||||||||||||  ||||||||||| ||||
Sbjct: 39099 gccataagcttctcctgcaaatctctctccttagcaa 39135
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>emb|X68197.1|OSTHLP O.sativa mRNA for thaumatin-like protein
          Length = 681

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 282 tcgccatgagcttctcctgca 302
           |||||||||||||||||||||
Sbjct: 417 tcgccatgagcttctcctgca 437
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>emb|AL645626.10| Mouse DNA sequence from clone RP23-397J5 on chromosome 11 Contains part
             of the Accn1 gene for neuronal amiloride-sensitive cation
             channel 1 (degenerin), a CpG island and a novel gene,
             complete sequence
          Length = 170821

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 292   cttctcctgcatctctctctc 312
             |||||||||||||||||||||
Sbjct: 83271 cttctcctgcatctctctctc 83291
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>gb|AY139776.1| Arabidopsis thaliana At1g76400/F15M4_10 mRNA, complete cds
          Length = 1963

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 196  gatcttctgctgctgggaagcaatccggttttc 228
            |||||| |||||||| ||||| |||||||||||
Sbjct: 1829 gatcttttgctgctgagaagcgatccggttttc 1797
to top
>gb|AY128779.1| Arabidopsis thaliana putative
            dolichyl-diphosphooligosaccharide-protein
            glycosyltransferase mRNA, complete cds
          Length = 1935

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 196  gatcttctgctgctgggaagcaatccggttttc 228
            |||||| |||||||| ||||| |||||||||||
Sbjct: 1791 gatcttttgctgctgagaagcgatccggttttc 1759
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>gb|AC144482.11| Medicago truncatula clone mth2-10p1, complete sequence
          Length = 121112

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 284   gccatgagcttctcctgcatctctctctccttcgcaa 320
             ||||| |||||||||||||  ||||||||||| ||||
Sbjct: 47539 gccataagcttctcctgcaaatctctctccttagcaa 47575
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>gb|AY081297.1| Arabidopsis thaliana putative
            dolichyl-diphosphooligosaccharide-protein
            glycosyltransferase mRNA, complete cds
          Length = 2031

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 196  gatcttctgctgctgggaagcaatccggttttc 228
            |||||| |||||||| ||||| |||||||||||
Sbjct: 1824 gatcttttgctgctgagaagcgatccggttttc 1792
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 282      tcgccatgagcttctcctgca 302
                |||||||||||||||||||||
Sbjct: 26991769 tcgccatgagcttctcctgca 26991749



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 282      tcgccatgagcttctcctgca 302
                |||||||||||||||||||||
Sbjct: 26982308 tcgccatgagcttctcctgca 26982288



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 282      tcgccatgagcttctcctgca 302
                |||||||||||||||||||||
Sbjct: 26946962 tcgccatgagcttctcctgca 26946942
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 282     tcgccatgagcttctcctgca 302
               |||||||||||||||||||||
Sbjct: 9868913 tcgccatgagcttctcctgca 9868893
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>emb|BX814207.1|CNS0AE1U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB60ZG11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1986

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 196  gatcttctgctgctgggaagcaatccggttttc 228
            |||||| |||||||| ||||| |||||||||||
Sbjct: 1805 gatcttttgctgctgagaagcgatccggttttc 1773
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>gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete
             sequence
          Length = 94487

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 196   gatcttctgctgctgggaagcaatccggttttc 228
             |||||| |||||||| ||||| |||||||||||
Sbjct: 46694 gatcttttgctgctgagaagcgatccggttttc 46662
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>gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome
          Length = 1042519

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 348    gataagactgaggggatgact 368
              |||||||||||||||||||||
Sbjct: 974813 gataagactgaggggatgact 974833
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>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0456E06
          Length = 164353

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 282    tcgccatgagcttctcctgca 302
              |||||||||||||||||||||
Sbjct: 159155 tcgccatgagcttctcctgca 159135
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>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0063H02
          Length = 152326

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 282   tcgccatgagcttctcctgca 302
             |||||||||||||||||||||
Sbjct: 65548 tcgccatgagcttctcctgca 65528
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>dbj|AK099946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123C17, full
           insert sequence
          Length = 796

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 282 tcgccatgagcttctcctgca 302
           |||||||||||||||||||||
Sbjct: 471 tcgccatgagcttctcctgca 491
to top
>dbj|AK069182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009L15, full
           insert sequence
          Length = 693

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 282 tcgccatgagcttctcctgca 302
           |||||||||||||||||||||
Sbjct: 456 tcgccatgagcttctcctgca 476
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 282      tcgccatgagcttctcctgca 302
                |||||||||||||||||||||
Sbjct: 26918166 tcgccatgagcttctcctgca 26918146



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 282      tcgccatgagcttctcctgca 302
                |||||||||||||||||||||
Sbjct: 26908955 tcgccatgagcttctcctgca 26908935



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 282      tcgccatgagcttctcctgca 302
                |||||||||||||||||||||
Sbjct: 26875132 tcgccatgagcttctcctgca 26875112
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 374    gataacaacagtggcttcaac 394
              |||||||||||||||||||||
Sbjct: 658695 gataacaacagtggcttcaac 658675
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>gb|DQ238866.1| Halophage AAJ-2005 isolate HalPHG1, partial genome
          Length = 35372

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 247  cttcttctcgaagctgtcaaccacc 271
            |||||||||||||| ||||||||||
Sbjct: 8012 cttcttctcgaagcggtcaaccacc 8036
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>gb|AC150558.1| Drosophila melanogaster clone BACR01N08, complete sequence
          Length = 174139

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    ttctgctgctgggaagcaat 219
              ||||||||||||||||||||
Sbjct: 101555 ttctgctgctgggaagcaat 101536
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 294     tctcctgcatctctctctcc 313
               ||||||||||||||||||||
Sbjct: 6401758 tctcctgcatctctctctcc 6401777
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>gb|AC122901.4| Mus musculus BAC clone RP23-40D21 from chromosome 10, complete sequence
          Length = 207598

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    ctcctgcatctctctctcct 314
              ||||||||||||||||||||
Sbjct: 168154 ctcctgcatctctctctcct 168173
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>emb|AL136991.26| Human DNA sequence from clone RP11-189J1 on chromosome 20 Contains the 3'
              end of the gene for a novel protein (LOC284776), complete
              sequence
          Length = 169342

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    gttgctttgcatgattttgt 456
              ||||||||||||||||||||
Sbjct: 143946 gttgctttgcatgattttgt 143927
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>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09,
             complete sequence
          Length = 146568

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   tctcctgcatctctctctcc 313
             ||||||||||||||||||||
Sbjct: 81884 tctcctgcatctctctctcc 81903
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>gb|AC093177.1| Drosophila melanogaster, chromosome 2L, region 36A-36B, BAC clone
              BACR33A07, complete sequence
          Length = 174726

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    ttctgctgctgggaagcaat 219
              ||||||||||||||||||||
Sbjct: 130997 ttctgctgctgggaagcaat 131016
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>gb|AC092398.1|AC092398 Drosophila melanogaster, chromosome 2L, region 36X-36X, BAC clone
              BACR03G19, complete sequence
          Length = 165839

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    ttctgctgctgggaagcaat 219
              ||||||||||||||||||||
Sbjct: 101555 ttctgctgctgggaagcaat 101536
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 294     tctcctgcatctctctctcc 313
               ||||||||||||||||||||
Sbjct: 6400971 tctcctgcatctctctctcc 6400990
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>gb|AC018685.12| Homo sapiens BAC clone RP11-455M16 from 2, complete sequence
          Length = 173381

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 445   gcatgattttgtgtctccagtcct 468
             |||| |||||||||||||||||||
Sbjct: 15438 gcattattttgtgtctccagtcct 15415
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>gb|AE003651.2| Drosophila melanogaster chromosome 2L, section 60 of 83 of the complete
             sequence
          Length = 254646

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   ttctgctgctgggaagcaat 219
             ||||||||||||||||||||
Sbjct: 28395 ttctgctgctgggaagcaat 28376
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>dbj|AP002800.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-832A4, complete
              sequence
          Length = 215441

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     gcctaccaacacaacatcta 79
              ||||||||||||||||||||
Sbjct: 208554 gcctaccaacacaacatcta 208573
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>gb|U13988.1|PCU13988 Peanut chlorotic streak caulimovirus, complete genome
          Length = 8174

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 395  tcttttgctaattccttaaa 414
            ||||||||||||||||||||
Sbjct: 3891 tcttttgctaattccttaaa 3872
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>gb|M33824.1|TRBWRATATB T.brucei WRATat B variant surface glycoprotein mRNA, complete cds
          Length = 1585

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 295  ctcctgcatctctctctcct 314
            ||||||||||||||||||||
Sbjct: 1424 ctcctgcatctctctctcct 1405


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,679,557
Number of Sequences: 3902068
Number of extensions: 4679557
Number of successful extensions: 96384
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96160
Number of HSP's gapped (non-prelim): 219
length of query: 556
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 533
effective length of database: 17,143,297,704
effective search space: 9137377676232
effective search space used: 9137377676232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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