| Clone Name | rbags32e15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034C23, full insert sequence Length = 1865 Score = 462 bits (233), Expect = e-127 Identities = 374/421 (88%) Strand = Plus / Minus Query: 139 cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 198 ||||||||||||| || |||||||||||||| ||||| |||| || |||||| ||||||| Sbjct: 1483 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 1424 Query: 199 tgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagccagt 258 |||||||||||||||| || ||||||||||| ||||||||||| |||||||||| ||||| Sbjct: 1423 tgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaaccagt 1364 Query: 259 tttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctgtttcctggtccaa 318 | || ||| | ||||||||| ||||||| ||||||| ||| ||||||| ||||||| Sbjct: 1363 tctctttctcgacaagctcgccatgatttaacttgtagctgatcttgtttccaggtccaa 1304 Query: 319 tcctttgttcactgtcaatccagtaggacggaataccactgagttctccaatttcttgca 378 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 1303 tcctttgttcactgtcaatccagtaagacggaattccactgagttctccaatttcttgca 1244 Query: 379 aatgagaagtattactggaattccaccctccaatgaccagaataaggtcaaccttttcct 438 ||||||| || |||||||| ||||| ||||||| ||||||||||| ||||| || |||| Sbjct: 1243 aatgagaggtgttactggagttccatcctccaacaaccagaataagatcaactttctcct 1184 Query: 439 tcactaggtgatacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaagg 498 ||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 1183 tcactagctggtacattgcatcttgtctttcctgtgtggcatcacagatagtgttgaagg 1124 Query: 499 caacaaagtgttcattggcattctcgactccaaacttacgcatcatagtcttctcaacaa 558 ||| ||||| |||||| ||||||| ||||||||| |||||||||| ||||||||||||| Sbjct: 1123 caatgaagtggtcattgacattctcaactccaaacctacgcatcattgtcttctcaacaa 1064 Query: 559 g 559 | Sbjct: 1063 g 1063
>dbj|AK064873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J09, full insert sequence Length = 1738 Score = 462 bits (233), Expect = e-127 Identities = 374/421 (88%) Strand = Plus / Minus Query: 139 cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 198 ||||||||||||| || |||||||||||||| ||||| |||| || |||||| ||||||| Sbjct: 1467 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 1408 Query: 199 tgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagccagt 258 |||||||||||||||| || ||||||||||| ||||||||||| |||||||||| ||||| Sbjct: 1407 tgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaaccagt 1348 Query: 259 tttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctgtttcctggtccaa 318 | || ||| | ||||||||| ||||||| ||||||| ||| ||||||| ||||||| Sbjct: 1347 tctctttctcgacaagctcgccatgatttaacttgtagctgatcttgtttccaggtccaa 1288 Query: 319 tcctttgttcactgtcaatccagtaggacggaataccactgagttctccaatttcttgca 378 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 1287 tcctttgttcactgtcaatccagtaagacggaattccactgagttctccaatttcttgca 1228 Query: 379 aatgagaagtattactggaattccaccctccaatgaccagaataaggtcaaccttttcct 438 ||||||| || |||||||| ||||| ||||||| ||||||||||| ||||| || |||| Sbjct: 1227 aatgagaggtgttactggagttccatcctccaacaaccagaataagatcaactttctcct 1168 Query: 439 tcactaggtgatacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaagg 498 ||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 1167 tcactagctggtacattgcatcttgtctttcctgtgtggcatcacagatagtgttgaagg 1108 Query: 499 caacaaagtgttcattggcattctcgactccaaacttacgcatcatagtcttctcaacaa 558 ||| ||||| |||||| ||||||| ||||||||| |||||||||| ||||||||||||| Sbjct: 1107 caatgaagtggtcattgacattctcaactccaaacctacgcatcattgtcttctcaacaa 1048 Query: 559 g 559 | Sbjct: 1047 g 1047
>dbj|AK062113.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B12, full insert sequence Length = 1852 Score = 448 bits (226), Expect = e-123 Identities = 373/421 (88%), Gaps = 2/421 (0%) Strand = Plus / Minus Query: 139 cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 198 ||||||||||||| || |||||||||||||| ||||| |||| || |||||| ||||||| Sbjct: 1442 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 1383 Query: 199 tgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagccagt 258 |||||||||||||||| || ||||||||||| |||||||||| |||||||||| ||||| Sbjct: 1382 tgtccggagttgaggcgccagaagtaactcc--ttgtgatagggccttctggtaaccagt 1325 Query: 259 tttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctgtttcctggtccaa 318 | || ||| | ||||||||| ||||||| ||||||| ||| ||||||| ||||||| Sbjct: 1324 tctctttctcgacaagctcgccatgatttaacttgtagctgatcttgtttccaggtccaa 1265 Query: 319 tcctttgttcactgtcaatccagtaggacggaataccactgagttctccaatttcttgca 378 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 1264 tcctttgttcactgtcaatccagtaagacggaattccactgagttctccaatttcttgca 1205 Query: 379 aatgagaagtattactggaattccaccctccaatgaccagaataaggtcaaccttttcct 438 ||||||| || |||||||| ||||| ||||||| ||||||||||| ||||| || |||| Sbjct: 1204 aatgagaggtgttactggagttccatcctccaacaaccagaataagatcaactttctcct 1145 Query: 439 tcactaggtgatacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaagg 498 ||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 1144 tcactagctggtacattgcatcttgtctttcctgtgtggcatcacagatagtgttgaagg 1085 Query: 499 caacaaagtgttcattggcattctcgactccaaacttacgcatcatagtcttctcaacaa 558 ||| ||||| |||||| ||||||| ||||||||| |||||||||| ||||||||||||| Sbjct: 1084 caatgaagtggtcattgacattctcaactccaaacctacgcatcattgtcttctcaacaa 1025 Query: 559 g 559 | Sbjct: 1024 g 1024
>gb|AY104067.1| Zea mays PCO067553 mRNA sequence Length = 839 Score = 329 bits (166), Expect = 6e-87 Identities = 322/374 (86%) Strand = Plus / Minus Query: 126 aaaatctatgcaacctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgta 185 ||||| |||||||||||||||| ||| ||||||||||||||||||||||| || || | | Sbjct: 838 aaaatttatgcaacctgcaaaatttcctgacgcttgatctcaaataccttctgaagagca 779 Query: 186 tcctcgacaaccttgtccggagttgaggcaccggaagtaactccaattgtgataggccct 245 ||||| |||||||| || |||||||||||||| |||||||| ||||| || |||||||| Sbjct: 778 tcctcaacaaccttatctggagttgaggcacctgaagtaacaccaatggtaataggcccc 719 Query: 246 tctggtagccagttttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctg 305 || |||| |||||| | ||||| || || || ||||||| ||||||| |||||| Sbjct: 718 tcgggtaaccagttatttttctcaaccagttcaccatgatttaacttgtagctgatcctg 659 Query: 306 tttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagttct 365 |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct: 658 tttcctggtccaatcctttgttcactgtcaatccagtatgatggaattccactgagttct 599 Query: 366 ccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataagg 425 || |||||||||| |||||| || ||||| |||||||| ||||||| || ||||||||| Sbjct: 598 ccgatttcttgcagatgagaggtgttacttgaattccatcctccaacaacaagaataagg 539 Query: 426 tcaaccttttccttcactaggtgatacattgcatcttgtctttcctgtgtagcatcacaa 485 ||||| || || ||||| || |||||||| ||||||||||||||||| || ||||||||| Sbjct: 538 tcaactttctctttcaccagctgatacatagcatcttgtctttcctgagtggcatcacaa 479 Query: 486 atagtgttgaaggc 499 ||||| |||||||| Sbjct: 478 atagtattgaaggc 465
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence Length = 163712 Score = 224 bits (113), Expect = 2e-55 Identities = 155/169 (91%) Strand = Plus / Minus Query: 304 tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 363 ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 112165 tgtttccaggtccaatcctttgttcactgtcaatccagtaagacggaattccactgagtt 112106 Query: 364 ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 423 |||||||||||||||||||||| || |||||||| ||||| ||||||| |||||||||| Sbjct: 112105 ctccaatttcttgcaaatgagaggtgttactggagttccatcctccaacaaccagaataa 112046 Query: 424 ggtcaaccttttccttcactaggtgatacattgcatcttgtctttcctg 472 | ||||| || ||||||||||| || ||||||||||||||||||||||| Sbjct: 112045 gatcaactttctccttcactagctggtacattgcatcttgtctttcctg 111997 Score = 109 bits (55), Expect = 1e-20 Identities = 82/91 (90%) Strand = Plus / Minus Query: 469 cctgtgtagcatcacaaatagtgttgaaggcaacaaagtgttcattggcattctcgactc 528 ||||||| |||||||| |||||||||||||||| ||||| |||||| ||||||| |||| Sbjct: 111835 cctgtgtggcatcacagatagtgttgaaggcaatgaagtggtcattgacattctcaactc 111776 Query: 529 caaacttacgcatcatagtcttctcaacaag 559 ||||| |||||||||| |||||||||||||| Sbjct: 111775 caaacctacgcatcattgtcttctcaacaag 111745 Score = 93.7 bits (47), Expect = 6e-16 Identities = 107/127 (84%) Strand = Plus / Minus Query: 304 tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 363 |||| ||||| |||||||| || |||| || | ||||||||| ||||| |||||||||| Sbjct: 105996 tgttccctggcccaatcctctgctcaccatcgacccagtaggaaggaatgccactgagtt 105937 Query: 364 ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 423 ||||||||||||||||||| || || |||||||| ||||| ||||| | ||| || || | Sbjct: 105936 ctccaatttcttgcaaatgggaggtgttactggagttccatcctccgacgacaagtatga 105877 Query: 424 ggtcaac 430 ||||||| Sbjct: 105876 ggtcaac 105870 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 195 accttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagc 254 |||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||| | Sbjct: 112459 accttgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaac 112400 Query: 255 cagtt 259 ||||| Sbjct: 112399 cagtt 112395 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 139 cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 198 ||||||||||||| || |||||||||||||| ||||| |||| || |||||| ||||||| Sbjct: 112636 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 112577 Score = 40.1 bits (20), Expect = 7.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 195 accttgtccggagttgaggcaccggaagtaactccaattgtgat 238 |||||||| ||||| ||||| || || || |||||||||||||| Sbjct: 106466 accttgtctggagtagaggctccagaggtgactccaattgtgat 106423
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 224 bits (113), Expect = 2e-55 Identities = 155/169 (91%) Strand = Plus / Plus Query: 304 tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 363 ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 29659212 tgtttccaggtccaatcctttgttcactgtcaatccagtaagacggaattccactgagtt 29659271 Query: 364 ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 423 |||||||||||||||||||||| || |||||||| ||||| ||||||| |||||||||| Sbjct: 29659272 ctccaatttcttgcaaatgagaggtgttactggagttccatcctccaacaaccagaataa 29659331 Query: 424 ggtcaaccttttccttcactaggtgatacattgcatcttgtctttcctg 472 | ||||| || ||||||||||| || ||||||||||||||||||||||| Sbjct: 29659332 gatcaactttctccttcactagctggtacattgcatcttgtctttcctg 29659380 Score = 109 bits (55), Expect = 1e-20 Identities = 82/91 (90%) Strand = Plus / Plus Query: 469 cctgtgtagcatcacaaatagtgttgaaggcaacaaagtgttcattggcattctcgactc 528 ||||||| |||||||| |||||||||||||||| ||||| |||||| ||||||| |||| Sbjct: 29659542 cctgtgtggcatcacagatagtgttgaaggcaatgaagtggtcattgacattctcaactc 29659601 Query: 529 caaacttacgcatcatagtcttctcaacaag 559 ||||| |||||||||| |||||||||||||| Sbjct: 29659602 caaacctacgcatcattgtcttctcaacaag 29659632 Score = 93.7 bits (47), Expect = 6e-16 Identities = 107/127 (84%) Strand = Plus / Plus Query: 304 tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 363 |||| ||||| |||||||| || |||| || | ||||||||| ||||| |||||||||| Sbjct: 29665381 tgttccctggcccaatcctctgctcaccatcgacccagtaggaaggaatgccactgagtt 29665440 Query: 364 ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 423 ||||||||||||||||||| || || |||||||| ||||| ||||| | ||| || || | Sbjct: 29665441 ctccaatttcttgcaaatgggaggtgttactggagttccatcctccgacgacaagtatga 29665500 Query: 424 ggtcaac 430 ||||||| Sbjct: 29665501 ggtcaac 29665507 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 195 accttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagc 254 |||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||| | Sbjct: 29658918 accttgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaac 29658977 Query: 255 cagtt 259 ||||| Sbjct: 29658978 cagtt 29658982 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 139 cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 198 ||||||||||||| || |||||||||||||| ||||| |||| || |||||| ||||||| Sbjct: 29658741 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 29658800 Score = 40.1 bits (20), Expect = 7.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 195 accttgtccggagttgaggcaccggaagtaactccaattgtgat 238 |||||||| ||||| ||||| || || || |||||||||||||| Sbjct: 29664911 accttgtctggagtagaggctccagaggtgactccaattgtgat 29664954 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tatgcaacctgcaaaacttc 151 |||||||||||||||||||| Sbjct: 2679604 tatgcaacctgcaaaacttc 2679623
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 224 bits (113), Expect = 2e-55 Identities = 155/169 (91%) Strand = Plus / Plus Query: 304 tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 363 ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 29750634 tgtttccaggtccaatcctttgttcactgtcaatccagtaagacggaattccactgagtt 29750693 Query: 364 ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 423 |||||||||||||||||||||| || |||||||| ||||| ||||||| |||||||||| Sbjct: 29750694 ctccaatttcttgcaaatgagaggtgttactggagttccatcctccaacaaccagaataa 29750753 Query: 424 ggtcaaccttttccttcactaggtgatacattgcatcttgtctttcctg 472 | ||||| || ||||||||||| || ||||||||||||||||||||||| Sbjct: 29750754 gatcaactttctccttcactagctggtacattgcatcttgtctttcctg 29750802 Score = 109 bits (55), Expect = 1e-20 Identities = 82/91 (90%) Strand = Plus / Plus Query: 469 cctgtgtagcatcacaaatagtgttgaaggcaacaaagtgttcattggcattctcgactc 528 ||||||| |||||||| |||||||||||||||| ||||| |||||| ||||||| |||| Sbjct: 29750964 cctgtgtggcatcacagatagtgttgaaggcaatgaagtggtcattgacattctcaactc 29751023 Query: 529 caaacttacgcatcatagtcttctcaacaag 559 ||||| |||||||||| |||||||||||||| Sbjct: 29751024 caaacctacgcatcattgtcttctcaacaag 29751054 Score = 93.7 bits (47), Expect = 6e-16 Identities = 107/127 (84%) Strand = Plus / Plus Query: 304 tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 363 |||| ||||| |||||||| || |||| || | ||||||||| ||||| |||||||||| Sbjct: 29756803 tgttccctggcccaatcctctgctcaccatcgacccagtaggaaggaatgccactgagtt 29756862 Query: 364 ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 423 ||||||||||||||||||| || || |||||||| ||||| ||||| | ||| || || | Sbjct: 29756863 ctccaatttcttgcaaatgggaggtgttactggagttccatcctccgacgacaagtatga 29756922 Query: 424 ggtcaac 430 ||||||| Sbjct: 29756923 ggtcaac 29756929 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 195 accttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagc 254 |||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||| | Sbjct: 29750340 accttgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaac 29750399 Query: 255 cagtt 259 ||||| Sbjct: 29750400 cagtt 29750404 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 139 cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 198 ||||||||||||| || |||||||||||||| ||||| |||| || |||||| ||||||| Sbjct: 29750163 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 29750222 Score = 40.1 bits (20), Expect = 7.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 195 accttgtccggagttgaggcaccggaagtaactccaattgtgat 238 |||||||| ||||| ||||| || || || |||||||||||||| Sbjct: 29756333 accttgtctggagtagaggctccagaggtgactccaattgtgat 29756376 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tatgcaacctgcaaaacttc 151 |||||||||||||||||||| Sbjct: 2679714 tatgcaacctgcaaaacttc 2679733
>gb|DQ364231.1| Ginkgo biloba 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (HDR) mRNA, complete cds Length = 1827 Score = 99.6 bits (50), Expect = 1e-17 Identities = 242/306 (79%) Strand = Plus / Minus Query: 192 acaaccttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggt 251 ||||| ||||| || ||||| ||||| || || || |||||||| |||||||||||||| Sbjct: 1392 acaactttgtctggggttgaagcaccagatgtgaccccaattgtaataggcccttctggc 1333 Query: 252 agccagttttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctgtttcct 311 | |||||| || ||| | ||||| || ||||| | |||||| |||||| | || || Sbjct: 1332 aaccagttctctttctccaccagctccccatgattcaacttgtatgcaatcatattccca 1273 Query: 312 ggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagttctccaatt 371 |||||||| | | ||| |||||||||||| || || || ||| | | ||| | || Sbjct: 1272 ggtccaatacgctcctcagagtcaatccagtatgaagggattccattcaattcagctatc 1213 Query: 372 tcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataaggtcaacc 431 |||||||| || || ||||| || || ||||| ||||||||||||| ||| || || | | Sbjct: 1212 tcttgcaagtgtgatgtattgctagagttccatcctccaatgaccaaaatgagatcgagc 1153 Query: 432 ttttccttcactaggtgatacattgcatcttgtctttcctgtgtagcatcacaaatagtg 491 || ||||| ||||| |||| ||||||||||||||||||||| ||||||||||| || ||| Sbjct: 1152 ttatcctttactagctgatgcattgcatcttgtctttcctgagtagcatcacatattgtg 1093 Query: 492 ttgaag 497 |||||| Sbjct: 1092 ttgaag 1087
>gb|AY433790.1| Pyrus communis LYTB-like protein mRNA, complete sequence Length = 246 Score = 71.9 bits (36), Expect = 2e-09 Identities = 153/192 (79%) Strand = Plus / Minus Query: 362 ttctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaat 421 |||| |||||||||| | ||||| || ||||| || |||||||| |||||||| | | Sbjct: 239 ttctgcaatttcttgtaggtgagaggtgttactcgagttccacccaccaatgactaacaa 180 Query: 422 aaggtcaaccttttccttcactaggtgatacattgcatcttgtctttcctgtgtagcatc 481 ||| |||| |||||||| || || | |||||||||||||||| ||||| || ||||| Sbjct: 179 aagatcaagcttttcctcaacaagcttgtacattgcatcttgtcgctcctgagttgcatc 120 Query: 482 acaaatagtgttgaaggcaacaaagtgttcattggcattctcgactccaaacttacgcat 541 ||| || ||||||||| |||||||| |||||| |||| || ||||| ||||||||| Sbjct: 119 acatattgtgttgaagctcacaaagtggtcattgacattttccactccgtgcttacgcat 60 Query: 542 catagtcttctc 553 ||| ||| |||| Sbjct: 59 catggtcctctc 48
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 451 acattgcatcttgtctttcctgtgtagcatcacaaatagt 490 ||||||||||||||||||| | ||||||||| |||||||| Sbjct: 288757 acattgcatcttgtctttcttctgtagcatcgcaaatagt 288718
>emb|BX572090.1| Prochlorococcus marinus MED4 complete genome; segment 1/5 Length = 349742 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 451 acattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaa 496 |||| |||||||||||||| | |||||||||||| ||||| ||||| Sbjct: 255076 acatcgcatcttgtctttcttctgtagcatcacagatagtattgaa 255031
>gb|DQ366744.1| Uncultured Prochlorococcus marinus clone HOT0M-8G12 genomic sequence Length = 20915 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 451 acattgcatcttgtctttcctgtgtagcatcacaaat 487 ||||||||||||||||||| | ||| ||||||||||| Sbjct: 3928 acattgcatcttgtctttcttctgttgcatcacaaat 3892
>gb|DQ269451.2| Stevia rebaudiana IPP/DMAPP synthase (ispH) mRNA, complete cds Length = 1637 Score = 48.1 bits (24), Expect = 0.031 Identities = 42/48 (87%) Strand = Plus / Minus Query: 449 atacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaa 496 |||||| |||||||||| ||| || ||||||||||| || |||||||| Sbjct: 1125 atacatagcatcttgtcgttcttgagtagcatcacagatggtgttgaa 1078
>gb|AF270978.1|AF270978 Adonis palaestina LYTB-like protein precursor (lytB) mRNA, complete cds Length = 1599 Score = 48.1 bits (24), Expect = 0.031 Identities = 75/92 (81%) Strand = Plus / Minus Query: 459 tcttgtctttcctgtgtagcatcacaaatagtgttgaaggcaacaaagtgttcattggca 518 |||||||| || |||||||||||||| || ||||| ||| | ||||| ||||| | Sbjct: 1093 tcttgtctctcttgtgtagcatcacatattgtgttaaagcttatgaagtggtcattaata 1034 Query: 519 ttctcgactccaaacttacgcatcatagtctt 550 ||||| |||||| |||| |||||||||||||| Sbjct: 1033 ttctcaactccatacttgcgcatcatagtctt 1002 Score = 44.1 bits (22), Expect = 0.49 Identities = 103/130 (79%) Strand = Plus / Minus Query: 228 ccaattgtgataggcccttctggtagccagttttccgcctcaataagctcgccgtgattt 287 |||||||| | ||| || ||||| ||||||||||| | ||||| ||||| || ||||| Sbjct: 1324 ccaattgtaacaggaccctctgggagccagttttcggtctcaactagctcaccatgattc 1265 Query: 288 agcttgtaggcaatcctgtttcctggtccaatcctttgttcactgtcaatccagtaggac 347 | |||| | |||| ||||||||||||| || || ||||||||||||||||| || Sbjct: 1264 aatttgtggctaatcttgtttcctggtcctattctcgtctcactgtcaatccagtaagaa 1205 Query: 348 ggaataccac 357 ||||| |||| Sbjct: 1204 ggaatgccac 1195
>gb|AY347830.1| Malus x domestica clone 30-6 LYTB-like protein mRNA, partial cds Length = 393 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Minus Query: 192 acaaccttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggt 251 |||||||| || ||||| || || || || || |||||||| |||| ||| |||||||| Sbjct: 155 acaaccttatctggagtagatgccccagatgtcactccaatagtgacaggaccttctggc 96 Query: 252 agccagttttc 262 ||||||||||| Sbjct: 95 agccagttttc 85
>gb|AY518540.1| Homo sapiens CDC5 cell division cycle 5-like (S. pombe) (CDC5L) gene, complete cds Length = 63393 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 394 tggaattccaccctccaatgac 415 |||||||||||||||||||||| Sbjct: 17026 tggaattccaccctccaatgac 17047
>emb|AL353588.25| Human DNA sequence from clone RP11-444E17 on chromosome 6 Contains the gene for a novel protein (possible ortholog of mouse TCTE1), the gene for novel protein (KIAA1270), a novel gene, the 5' end of a novel gene (possible ortholog of rodent CDC5-like protein), the 3' part of a novel gene and three CpG islands, complete sequence Length = 145947 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 394 tggaattccaccctccaatgac 415 |||||||||||||||||||||| Sbjct: 126006 tggaattccaccctccaatgac 126027
>ref|XM_632282.1| Dictyostelium discoideum hypothetical protein (DDB0187318), partial mRNA Length = 4314 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 cattgcatcttgtctttcct 471 |||||||||||||||||||| Sbjct: 876 cattgcatcttgtctttcct 895
>gb|AY497304.1| Nicotiana benthamiana isopentenyl/dimethylallyl diphosphate synthase mRNA, partial cds Length = 500 Score = 40.1 bits (20), Expect = 7.7 Identities = 41/48 (85%) Strand = Plus / Minus Query: 449 atacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaa 496 ||||||||||||||| | || || || |||||||| ||||||||||| Sbjct: 316 atacattgcatcttgccgctcttgagttgcatcacatatagtgttgaa 269
>gb|AF514843.1| Forsythia x intermedia LYTB-like protein (LYTB) mRNA, partial cds Length = 389 Score = 40.1 bits (20), Expect = 7.7 Identities = 41/48 (85%) Strand = Plus / Minus Query: 449 atacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaa 496 |||||| |||||||| | ||| || || ||||| |||||||||||||| Sbjct: 156 atacatggcatcttgccgttcttgagtggcatcgcaaatagtgttgaa 109
>gb|AC018680.4|AC018680 Homo sapiens BAC clone RP11-384E2 from 4, complete sequence Length = 181850 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 aaatgagaagtattactgga 397 |||||||||||||||||||| Sbjct: 97056 aaatgagaagtattactgga 97075
>emb|BX950457.1| Gallus gallus finished cDNA, clone ChEST992n21 Length = 1065 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 tgaaaatctatgcaacctgc 143 |||||||||||||||||||| Sbjct: 1005 tgaaaatctatgcaacctgc 1024
>gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0050N02, complete sequence Length = 133373 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tatgcaacctgcaaaacttc 151 |||||||||||||||||||| Sbjct: 24523 tatgcaacctgcaaaacttc 24542
>gb|AF159699.1|AF159699 Nicotiana tabacum putative host factor mRNA, partial cds Length = 747 Score = 40.1 bits (20), Expect = 7.7 Identities = 41/48 (85%) Strand = Plus / Minus Query: 449 atacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaa 496 ||||||||||||||| | || || || |||||||| ||||||||||| Sbjct: 186 atacattgcatcttgccgctcttgagttgcatcacatatagtgttgaa 139 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,320,885 Number of Sequences: 3902068 Number of extensions: 4320885 Number of successful extensions: 78985 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78836 Number of HSP's gapped (non-prelim): 144 length of query: 564 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 541 effective length of database: 17,143,297,704 effective search space: 9274524057864 effective search space used: 9274524057864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)