ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32e15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK121561.1| Oryza sativa (japonica cultivar-group) cDNA clon... 462 e-127
2dbj|AK064873.1| Oryza sativa (japonica cultivar-group) cDNA clon... 462 e-127
3dbj|AK062113.1| Oryza sativa (japonica cultivar-group) cDNA clon... 448 e-123
4gb|AY104067.1| Zea mays PCO067553 mRNA sequence 329 6e-87
5gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 geno... 224 2e-55
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 224 2e-55
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 224 2e-55
8gb|DQ364231.1| Ginkgo biloba 1-hydroxy-2-methyl-2-(E)-butenyl 4-... 100 1e-17
9gb|AY433790.1| Pyrus communis LYTB-like protein mRNA, complete s... 72 2e-09
10gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 56 1e-04
11emb|BX572090.1| Prochlorococcus marinus MED4 complete genome; se... 52 0.002
12gb|DQ366744.1| Uncultured Prochlorococcus marinus clone HOT0M-8G... 50 0.008
13gb|DQ269451.2| Stevia rebaudiana IPP/DMAPP synthase (ispH) mRNA,... 48 0.031
14gb|AF270978.1|AF270978 Adonis palaestina LYTB-like protein precu... 48 0.031
15gb|AY347830.1| Malus x domestica clone 30-6 LYTB-like protein mR... 46 0.12
16gb|AY518540.1| Homo sapiens CDC5 cell division cycle 5-like (S. ... 44 0.49
17emb|AL353588.25| Human DNA sequence from clone RP11-444E17 on ch... 44 0.49
18ref|XM_632282.1| Dictyostelium discoideum hypothetical protein (... 40 7.7
19gb|AY497304.1| Nicotiana benthamiana isopentenyl/dimethylallyl d... 40 7.7
20gb|AF514843.1| Forsythia x intermedia LYTB-like protein (LYTB) m... 40 7.7
21gb|AC018680.4|AC018680 Homo sapiens BAC clone RP11-384E2 from 4,... 40 7.7
22emb|BX950457.1| Gallus gallus finished cDNA, clone ChEST992n21 40 7.7
23gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
24gb|AF159699.1|AF159699 Nicotiana tabacum putative host factor mR... 40 7.7

>dbj|AK121561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034C23, full
            insert sequence
          Length = 1865

 Score =  462 bits (233), Expect = e-127
 Identities = 374/421 (88%)
 Strand = Plus / Minus

                                                                        
Query: 139  cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 198
            ||||||||||||| || |||||||||||||| ||||| |||| || |||||| |||||||
Sbjct: 1483 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 1424

                                                                        
Query: 199  tgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagccagt 258
            |||||||||||||||| || ||||||||||| ||||||||||| |||||||||| |||||
Sbjct: 1423 tgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaaccagt 1364

                                                                        
Query: 259  tttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctgtttcctggtccaa 318
            | ||   ||| | ||||||||| ||||||| |||||||   ||| ||||||| |||||||
Sbjct: 1363 tctctttctcgacaagctcgccatgatttaacttgtagctgatcttgtttccaggtccaa 1304

                                                                        
Query: 319  tcctttgttcactgtcaatccagtaggacggaataccactgagttctccaatttcttgca 378
            ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 1303 tcctttgttcactgtcaatccagtaagacggaattccactgagttctccaatttcttgca 1244

                                                                        
Query: 379  aatgagaagtattactggaattccaccctccaatgaccagaataaggtcaaccttttcct 438
            ||||||| || |||||||| ||||| |||||||  ||||||||||| ||||| || ||||
Sbjct: 1243 aatgagaggtgttactggagttccatcctccaacaaccagaataagatcaactttctcct 1184

                                                                        
Query: 439  tcactaggtgatacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaagg 498
            ||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1183 tcactagctggtacattgcatcttgtctttcctgtgtggcatcacagatagtgttgaagg 1124

                                                                        
Query: 499  caacaaagtgttcattggcattctcgactccaaacttacgcatcatagtcttctcaacaa 558
            |||  ||||| |||||| ||||||| ||||||||| |||||||||| |||||||||||||
Sbjct: 1123 caatgaagtggtcattgacattctcaactccaaacctacgcatcattgtcttctcaacaa 1064

             
Query: 559  g 559
            |
Sbjct: 1063 g 1063



to top

>dbj|AK064873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J09, full
            insert sequence
          Length = 1738

 Score =  462 bits (233), Expect = e-127
 Identities = 374/421 (88%)
 Strand = Plus / Minus

                                                                        
Query: 139  cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 198
            ||||||||||||| || |||||||||||||| ||||| |||| || |||||| |||||||
Sbjct: 1467 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 1408

                                                                        
Query: 199  tgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagccagt 258
            |||||||||||||||| || ||||||||||| ||||||||||| |||||||||| |||||
Sbjct: 1407 tgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaaccagt 1348

                                                                        
Query: 259  tttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctgtttcctggtccaa 318
            | ||   ||| | ||||||||| ||||||| |||||||   ||| ||||||| |||||||
Sbjct: 1347 tctctttctcgacaagctcgccatgatttaacttgtagctgatcttgtttccaggtccaa 1288

                                                                        
Query: 319  tcctttgttcactgtcaatccagtaggacggaataccactgagttctccaatttcttgca 378
            ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 1287 tcctttgttcactgtcaatccagtaagacggaattccactgagttctccaatttcttgca 1228

                                                                        
Query: 379  aatgagaagtattactggaattccaccctccaatgaccagaataaggtcaaccttttcct 438
            ||||||| || |||||||| ||||| |||||||  ||||||||||| ||||| || ||||
Sbjct: 1227 aatgagaggtgttactggagttccatcctccaacaaccagaataagatcaactttctcct 1168

                                                                        
Query: 439  tcactaggtgatacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaagg 498
            ||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1167 tcactagctggtacattgcatcttgtctttcctgtgtggcatcacagatagtgttgaagg 1108

                                                                        
Query: 499  caacaaagtgttcattggcattctcgactccaaacttacgcatcatagtcttctcaacaa 558
            |||  ||||| |||||| ||||||| ||||||||| |||||||||| |||||||||||||
Sbjct: 1107 caatgaagtggtcattgacattctcaactccaaacctacgcatcattgtcttctcaacaa 1048

             
Query: 559  g 559
            |
Sbjct: 1047 g 1047



to top

>dbj|AK062113.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B12, full
            insert sequence
          Length = 1852

 Score =  448 bits (226), Expect = e-123
 Identities = 373/421 (88%), Gaps = 2/421 (0%)
 Strand = Plus / Minus

                                                                        
Query: 139  cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 198
            ||||||||||||| || |||||||||||||| ||||| |||| || |||||| |||||||
Sbjct: 1442 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 1383

                                                                        
Query: 199  tgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagccagt 258
            |||||||||||||||| || |||||||||||  |||||||||| |||||||||| |||||
Sbjct: 1382 tgtccggagttgaggcgccagaagtaactcc--ttgtgatagggccttctggtaaccagt 1325

                                                                        
Query: 259  tttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctgtttcctggtccaa 318
            | ||   ||| | ||||||||| ||||||| |||||||   ||| ||||||| |||||||
Sbjct: 1324 tctctttctcgacaagctcgccatgatttaacttgtagctgatcttgtttccaggtccaa 1265

                                                                        
Query: 319  tcctttgttcactgtcaatccagtaggacggaataccactgagttctccaatttcttgca 378
            ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 1264 tcctttgttcactgtcaatccagtaagacggaattccactgagttctccaatttcttgca 1205

                                                                        
Query: 379  aatgagaagtattactggaattccaccctccaatgaccagaataaggtcaaccttttcct 438
            ||||||| || |||||||| ||||| |||||||  ||||||||||| ||||| || ||||
Sbjct: 1204 aatgagaggtgttactggagttccatcctccaacaaccagaataagatcaactttctcct 1145

                                                                        
Query: 439  tcactaggtgatacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaagg 498
            ||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1144 tcactagctggtacattgcatcttgtctttcctgtgtggcatcacagatagtgttgaagg 1085

                                                                        
Query: 499  caacaaagtgttcattggcattctcgactccaaacttacgcatcatagtcttctcaacaa 558
            |||  ||||| |||||| ||||||| ||||||||| |||||||||| |||||||||||||
Sbjct: 1084 caatgaagtggtcattgacattctcaactccaaacctacgcatcattgtcttctcaacaa 1025

             
Query: 559  g 559
            |
Sbjct: 1024 g 1024



to top

>gb|AY104067.1| Zea mays PCO067553 mRNA sequence
          Length = 839

 Score =  329 bits (166), Expect = 6e-87
 Identities = 322/374 (86%)
 Strand = Plus / Minus

                                                                       
Query: 126 aaaatctatgcaacctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgta 185
           ||||| |||||||||||||||| ||| ||||||||||||||||||||||| || || | |
Sbjct: 838 aaaatttatgcaacctgcaaaatttcctgacgcttgatctcaaataccttctgaagagca 779

                                                                       
Query: 186 tcctcgacaaccttgtccggagttgaggcaccggaagtaactccaattgtgataggccct 245
           ||||| |||||||| || |||||||||||||| |||||||| ||||| || |||||||| 
Sbjct: 778 tcctcaacaaccttatctggagttgaggcacctgaagtaacaccaatggtaataggcccc 719

                                                                       
Query: 246 tctggtagccagttttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctg 305
           || |||| |||||| |    |||||  || || || ||||||| |||||||   ||||||
Sbjct: 718 tcgggtaaccagttatttttctcaaccagttcaccatgatttaacttgtagctgatcctg 659

                                                                       
Query: 306 tttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagttct 365
           |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 658 tttcctggtccaatcctttgttcactgtcaatccagtatgatggaattccactgagttct 599

                                                                       
Query: 366 ccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataagg 425
           || |||||||||| |||||| || ||||| |||||||| |||||||  || |||||||||
Sbjct: 598 ccgatttcttgcagatgagaggtgttacttgaattccatcctccaacaacaagaataagg 539

                                                                       
Query: 426 tcaaccttttccttcactaggtgatacattgcatcttgtctttcctgtgtagcatcacaa 485
           ||||| || || ||||| || |||||||| ||||||||||||||||| || |||||||||
Sbjct: 538 tcaactttctctttcaccagctgatacatagcatcttgtctttcctgagtggcatcacaa 479

                         
Query: 486 atagtgttgaaggc 499
           ||||| ||||||||
Sbjct: 478 atagtattgaaggc 465



to top

>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete
              sequence
          Length = 163712

 Score =  224 bits (113), Expect = 2e-55
 Identities = 155/169 (91%)
 Strand = Plus / Minus

                                                                          
Query: 304    tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 363
              ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 112165 tgtttccaggtccaatcctttgttcactgtcaatccagtaagacggaattccactgagtt 112106

                                                                          
Query: 364    ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 423
              |||||||||||||||||||||| || |||||||| ||||| |||||||  ||||||||||
Sbjct: 112105 ctccaatttcttgcaaatgagaggtgttactggagttccatcctccaacaaccagaataa 112046

                                                               
Query: 424    ggtcaaccttttccttcactaggtgatacattgcatcttgtctttcctg 472
              | ||||| || ||||||||||| || |||||||||||||||||||||||
Sbjct: 112045 gatcaactttctccttcactagctggtacattgcatcttgtctttcctg 111997



 Score =  109 bits (55), Expect = 1e-20
 Identities = 82/91 (90%)
 Strand = Plus / Minus

                                                                          
Query: 469    cctgtgtagcatcacaaatagtgttgaaggcaacaaagtgttcattggcattctcgactc 528
              ||||||| |||||||| ||||||||||||||||  ||||| |||||| ||||||| ||||
Sbjct: 111835 cctgtgtggcatcacagatagtgttgaaggcaatgaagtggtcattgacattctcaactc 111776

                                             
Query: 529    caaacttacgcatcatagtcttctcaacaag 559
              ||||| |||||||||| ||||||||||||||
Sbjct: 111775 caaacctacgcatcattgtcttctcaacaag 111745



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 107/127 (84%)
 Strand = Plus / Minus

                                                                          
Query: 304    tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 363
              |||| ||||| |||||||| || ||||  || | ||||||||| ||||| ||||||||||
Sbjct: 105996 tgttccctggcccaatcctctgctcaccatcgacccagtaggaaggaatgccactgagtt 105937

                                                                          
Query: 364    ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 423
              ||||||||||||||||||| || || |||||||| ||||| ||||| | ||| || || |
Sbjct: 105936 ctccaatttcttgcaaatgggaggtgttactggagttccatcctccgacgacaagtatga 105877

                     
Query: 424    ggtcaac 430
              |||||||
Sbjct: 105876 ggtcaac 105870



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                          
Query: 195    accttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagc 254
              |||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||| |
Sbjct: 112459 accttgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaac 112400

                   
Query: 255    cagtt 259
              |||||
Sbjct: 112399 cagtt 112395



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                          
Query: 139    cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 198
              ||||||||||||| || |||||||||||||| ||||| |||| || |||||| |||||||
Sbjct: 112636 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 112577



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                          
Query: 195    accttgtccggagttgaggcaccggaagtaactccaattgtgat 238
              |||||||| ||||| ||||| || || || ||||||||||||||
Sbjct: 106466 accttgtctggagtagaggctccagaggtgactccaattgtgat 106423



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  224 bits (113), Expect = 2e-55
 Identities = 155/169 (91%)
 Strand = Plus / Plus

                                                                            
Query: 304      tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 363
                ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 29659212 tgtttccaggtccaatcctttgttcactgtcaatccagtaagacggaattccactgagtt 29659271

                                                                            
Query: 364      ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 423
                |||||||||||||||||||||| || |||||||| ||||| |||||||  ||||||||||
Sbjct: 29659272 ctccaatttcttgcaaatgagaggtgttactggagttccatcctccaacaaccagaataa 29659331

                                                                 
Query: 424      ggtcaaccttttccttcactaggtgatacattgcatcttgtctttcctg 472
                | ||||| || ||||||||||| || |||||||||||||||||||||||
Sbjct: 29659332 gatcaactttctccttcactagctggtacattgcatcttgtctttcctg 29659380



 Score =  109 bits (55), Expect = 1e-20
 Identities = 82/91 (90%)
 Strand = Plus / Plus

                                                                            
Query: 469      cctgtgtagcatcacaaatagtgttgaaggcaacaaagtgttcattggcattctcgactc 528
                ||||||| |||||||| ||||||||||||||||  ||||| |||||| ||||||| ||||
Sbjct: 29659542 cctgtgtggcatcacagatagtgttgaaggcaatgaagtggtcattgacattctcaactc 29659601

                                               
Query: 529      caaacttacgcatcatagtcttctcaacaag 559
                ||||| |||||||||| ||||||||||||||
Sbjct: 29659602 caaacctacgcatcattgtcttctcaacaag 29659632



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 107/127 (84%)
 Strand = Plus / Plus

                                                                            
Query: 304      tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 363
                |||| ||||| |||||||| || ||||  || | ||||||||| ||||| ||||||||||
Sbjct: 29665381 tgttccctggcccaatcctctgctcaccatcgacccagtaggaaggaatgccactgagtt 29665440

                                                                            
Query: 364      ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 423
                ||||||||||||||||||| || || |||||||| ||||| ||||| | ||| || || |
Sbjct: 29665441 ctccaatttcttgcaaatgggaggtgttactggagttccatcctccgacgacaagtatga 29665500

                       
Query: 424      ggtcaac 430
                |||||||
Sbjct: 29665501 ggtcaac 29665507



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                            
Query: 195      accttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagc 254
                |||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||| |
Sbjct: 29658918 accttgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaac 29658977

                     
Query: 255      cagtt 259
                |||||
Sbjct: 29658978 cagtt 29658982



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 139      cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 198
                ||||||||||||| || |||||||||||||| ||||| |||| || |||||| |||||||
Sbjct: 29658741 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 29658800



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                            
Query: 195      accttgtccggagttgaggcaccggaagtaactccaattgtgat 238
                |||||||| ||||| ||||| || || || ||||||||||||||
Sbjct: 29664911 accttgtctggagtagaggctccagaggtgactccaattgtgat 29664954



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 132     tatgcaacctgcaaaacttc 151
               ||||||||||||||||||||
Sbjct: 2679604 tatgcaacctgcaaaacttc 2679623



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  224 bits (113), Expect = 2e-55
 Identities = 155/169 (91%)
 Strand = Plus / Plus

                                                                            
Query: 304      tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 363
                ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 29750634 tgtttccaggtccaatcctttgttcactgtcaatccagtaagacggaattccactgagtt 29750693

                                                                            
Query: 364      ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 423
                |||||||||||||||||||||| || |||||||| ||||| |||||||  ||||||||||
Sbjct: 29750694 ctccaatttcttgcaaatgagaggtgttactggagttccatcctccaacaaccagaataa 29750753

                                                                 
Query: 424      ggtcaaccttttccttcactaggtgatacattgcatcttgtctttcctg 472
                | ||||| || ||||||||||| || |||||||||||||||||||||||
Sbjct: 29750754 gatcaactttctccttcactagctggtacattgcatcttgtctttcctg 29750802



 Score =  109 bits (55), Expect = 1e-20
 Identities = 82/91 (90%)
 Strand = Plus / Plus

                                                                            
Query: 469      cctgtgtagcatcacaaatagtgttgaaggcaacaaagtgttcattggcattctcgactc 528
                ||||||| |||||||| ||||||||||||||||  ||||| |||||| ||||||| ||||
Sbjct: 29750964 cctgtgtggcatcacagatagtgttgaaggcaatgaagtggtcattgacattctcaactc 29751023

                                               
Query: 529      caaacttacgcatcatagtcttctcaacaag 559
                ||||| |||||||||| ||||||||||||||
Sbjct: 29751024 caaacctacgcatcattgtcttctcaacaag 29751054



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 107/127 (84%)
 Strand = Plus / Plus

                                                                            
Query: 304      tgtttcctggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagtt 363
                |||| ||||| |||||||| || ||||  || | ||||||||| ||||| ||||||||||
Sbjct: 29756803 tgttccctggcccaatcctctgctcaccatcgacccagtaggaaggaatgccactgagtt 29756862

                                                                            
Query: 364      ctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataa 423
                ||||||||||||||||||| || || |||||||| ||||| ||||| | ||| || || |
Sbjct: 29756863 ctccaatttcttgcaaatgggaggtgttactggagttccatcctccgacgacaagtatga 29756922

                       
Query: 424      ggtcaac 430
                |||||||
Sbjct: 29756923 ggtcaac 29756929



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                            
Query: 195      accttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggtagc 254
                |||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||| |
Sbjct: 29750340 accttgtccggagttgaggcgccagaagtaactccgattgtgatagggccttctggtaac 29750399

                     
Query: 255      cagtt 259
                |||||
Sbjct: 29750400 cagtt 29750404



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 139      cctgcaaaacttcttgacgcttgatctcaaataccttgtgtagcgtatcctcgacaacct 198
                ||||||||||||| || |||||||||||||| ||||| |||| || |||||| |||||||
Sbjct: 29750163 cctgcaaaacttcctggcgcttgatctcaaacaccttctgtaacgcatcctcaacaacct 29750222



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                            
Query: 195      accttgtccggagttgaggcaccggaagtaactccaattgtgat 238
                |||||||| ||||| ||||| || || || ||||||||||||||
Sbjct: 29756333 accttgtctggagtagaggctccagaggtgactccaattgtgat 29756376



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 132     tatgcaacctgcaaaacttc 151
               ||||||||||||||||||||
Sbjct: 2679714 tatgcaacctgcaaaacttc 2679733



to top

>gb|DQ364231.1| Ginkgo biloba 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
            reductase (HDR) mRNA, complete cds
          Length = 1827

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 242/306 (79%)
 Strand = Plus / Minus

                                                                        
Query: 192  acaaccttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggt 251
            ||||| ||||| || ||||| ||||| || || || |||||||| |||||||||||||| 
Sbjct: 1392 acaactttgtctggggttgaagcaccagatgtgaccccaattgtaataggcccttctggc 1333

                                                                        
Query: 252  agccagttttccgcctcaataagctcgccgtgatttagcttgtaggcaatcctgtttcct 311
            | |||||| ||   ||| |  ||||| || ||||| | |||||| |||||| | || || 
Sbjct: 1332 aaccagttctctttctccaccagctccccatgattcaacttgtatgcaatcatattccca 1273

                                                                        
Query: 312  ggtccaatcctttgttcactgtcaatccagtaggacggaataccactgagttctccaatt 371
            |||||||| |  |  |||  |||||||||||| || || || ||| | | |||  | || 
Sbjct: 1272 ggtccaatacgctcctcagagtcaatccagtatgaagggattccattcaattcagctatc 1213

                                                                        
Query: 372  tcttgcaaatgagaagtattactggaattccaccctccaatgaccagaataaggtcaacc 431
            |||||||| || || ||||| || || ||||| ||||||||||||| ||| || || | |
Sbjct: 1212 tcttgcaagtgtgatgtattgctagagttccatcctccaatgaccaaaatgagatcgagc 1153

                                                                        
Query: 432  ttttccttcactaggtgatacattgcatcttgtctttcctgtgtagcatcacaaatagtg 491
            || ||||| ||||| |||| ||||||||||||||||||||| ||||||||||| || |||
Sbjct: 1152 ttatcctttactagctgatgcattgcatcttgtctttcctgagtagcatcacatattgtg 1093

                  
Query: 492  ttgaag 497
            ||||||
Sbjct: 1092 ttgaag 1087



to top

>gb|AY433790.1| Pyrus communis LYTB-like protein mRNA, complete sequence
          Length = 246

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                       
Query: 362 ttctccaatttcttgcaaatgagaagtattactggaattccaccctccaatgaccagaat 421
           |||| |||||||||| |  ||||| || ||||| || |||||||| |||||||| |  | 
Sbjct: 239 ttctgcaatttcttgtaggtgagaggtgttactcgagttccacccaccaatgactaacaa 180

                                                                       
Query: 422 aaggtcaaccttttccttcactaggtgatacattgcatcttgtctttcctgtgtagcatc 481
           ||| |||| ||||||||  || || |  ||||||||||||||||  ||||| || |||||
Sbjct: 179 aagatcaagcttttcctcaacaagcttgtacattgcatcttgtcgctcctgagttgcatc 120

                                                                       
Query: 482 acaaatagtgttgaaggcaacaaagtgttcattggcattctcgactccaaacttacgcat 541
           ||| || |||||||||   |||||||| |||||| |||| || |||||   |||||||||
Sbjct: 119 acatattgtgttgaagctcacaaagtggtcattgacattttccactccgtgcttacgcat 60

                       
Query: 542 catagtcttctc 553
           ||| ||| ||||
Sbjct: 59  catggtcctctc 48



to top

>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                      
Query: 451    acattgcatcttgtctttcctgtgtagcatcacaaatagt 490
              ||||||||||||||||||| | ||||||||| ||||||||
Sbjct: 288757 acattgcatcttgtctttcttctgtagcatcgcaaatagt 288718



to top

>emb|BX572090.1| Prochlorococcus marinus MED4 complete genome; segment 1/5
          Length = 349742

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                            
Query: 451    acattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaa 496
              |||| |||||||||||||| | |||||||||||| ||||| |||||
Sbjct: 255076 acatcgcatcttgtctttcttctgtagcatcacagatagtattgaa 255031



to top

>gb|DQ366744.1| Uncultured Prochlorococcus marinus clone HOT0M-8G12 genomic sequence
          Length = 20915

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 451  acattgcatcttgtctttcctgtgtagcatcacaaat 487
            ||||||||||||||||||| | ||| |||||||||||
Sbjct: 3928 acattgcatcttgtctttcttctgttgcatcacaaat 3892



to top

>gb|DQ269451.2| Stevia rebaudiana IPP/DMAPP synthase (ispH) mRNA, complete cds
          Length = 1637

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 449  atacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaa 496
            |||||| |||||||||| ||| || ||||||||||| || ||||||||
Sbjct: 1125 atacatagcatcttgtcgttcttgagtagcatcacagatggtgttgaa 1078



to top

>gb|AF270978.1|AF270978 Adonis palaestina LYTB-like protein precursor (lytB) mRNA, complete
            cds
          Length = 1599

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                        
Query: 459  tcttgtctttcctgtgtagcatcacaaatagtgttgaaggcaacaaagtgttcattggca 518
            |||||||| || |||||||||||||| || ||||| |||   |  ||||| |||||   |
Sbjct: 1093 tcttgtctctcttgtgtagcatcacatattgtgttaaagcttatgaagtggtcattaata 1034

                                            
Query: 519  ttctcgactccaaacttacgcatcatagtctt 550
            ||||| |||||| |||| ||||||||||||||
Sbjct: 1033 ttctcaactccatacttgcgcatcatagtctt 1002



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 103/130 (79%)
 Strand = Plus / Minus

                                                                        
Query: 228  ccaattgtgataggcccttctggtagccagttttccgcctcaataagctcgccgtgattt 287
            |||||||| | ||| || ||||| ||||||||||| | |||||  ||||| || ||||| 
Sbjct: 1324 ccaattgtaacaggaccctctgggagccagttttcggtctcaactagctcaccatgattc 1265

                                                                        
Query: 288  agcttgtaggcaatcctgtttcctggtccaatcctttgttcactgtcaatccagtaggac 347
            |  |||| |  |||| ||||||||||||| || ||    ||||||||||||||||| || 
Sbjct: 1264 aatttgtggctaatcttgtttcctggtcctattctcgtctcactgtcaatccagtaagaa 1205

                      
Query: 348  ggaataccac 357
            ||||| ||||
Sbjct: 1204 ggaatgccac 1195



to top

>gb|AY347830.1| Malus x domestica clone 30-6 LYTB-like protein mRNA, partial cds
          Length = 393

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                       
Query: 192 acaaccttgtccggagttgaggcaccggaagtaactccaattgtgataggcccttctggt 251
           |||||||| || ||||| || || || || || |||||||| |||| ||| |||||||| 
Sbjct: 155 acaaccttatctggagtagatgccccagatgtcactccaatagtgacaggaccttctggc 96

                      
Query: 252 agccagttttc 262
           |||||||||||
Sbjct: 95  agccagttttc 85



to top

>gb|AY518540.1| Homo sapiens CDC5 cell division cycle 5-like (S. pombe) (CDC5L) gene,
             complete cds
          Length = 63393

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 394   tggaattccaccctccaatgac 415
             ||||||||||||||||||||||
Sbjct: 17026 tggaattccaccctccaatgac 17047



to top

>emb|AL353588.25| Human DNA sequence from clone RP11-444E17 on chromosome 6 Contains the
              gene for a novel protein (possible ortholog of mouse
              TCTE1), the gene for novel protein (KIAA1270), a novel
              gene, the 5' end of a novel gene (possible ortholog of
              rodent CDC5-like protein), the 3' part of a novel gene and
              three CpG islands, complete sequence
          Length = 145947

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 394    tggaattccaccctccaatgac 415
              ||||||||||||||||||||||
Sbjct: 126006 tggaattccaccctccaatgac 126027



to top

>ref|XM_632282.1| Dictyostelium discoideum hypothetical protein (DDB0187318), partial
           mRNA
          Length = 4314

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 452 cattgcatcttgtctttcct 471
           ||||||||||||||||||||
Sbjct: 876 cattgcatcttgtctttcct 895



to top

>gb|AY497304.1| Nicotiana benthamiana isopentenyl/dimethylallyl diphosphate
           synthase mRNA, partial cds
          Length = 500

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 449 atacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaa 496
           ||||||||||||||| |  || || || |||||||| |||||||||||
Sbjct: 316 atacattgcatcttgccgctcttgagttgcatcacatatagtgttgaa 269



to top

>gb|AF514843.1| Forsythia x intermedia LYTB-like protein (LYTB) mRNA, partial cds
          Length = 389

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 449 atacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaa 496
           |||||| |||||||| | ||| || || ||||| ||||||||||||||
Sbjct: 156 atacatggcatcttgccgttcttgagtggcatcgcaaatagtgttgaa 109



to top

>gb|AC018680.4|AC018680 Homo sapiens BAC clone RP11-384E2 from 4, complete sequence
          Length = 181850

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 378   aaatgagaagtattactgga 397
             ||||||||||||||||||||
Sbjct: 97056 aaatgagaagtattactgga 97075



to top

>emb|BX950457.1| Gallus gallus finished cDNA, clone ChEST992n21
          Length = 1065

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 124  tgaaaatctatgcaacctgc 143
            ||||||||||||||||||||
Sbjct: 1005 tgaaaatctatgcaacctgc 1024



to top

>gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0050N02, complete sequence
          Length = 133373

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   tatgcaacctgcaaaacttc 151
             ||||||||||||||||||||
Sbjct: 24523 tatgcaacctgcaaaacttc 24542



to top

>gb|AF159699.1|AF159699 Nicotiana tabacum putative host factor mRNA, partial cds
          Length = 747

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 449 atacattgcatcttgtctttcctgtgtagcatcacaaatagtgttgaa 496
           ||||||||||||||| |  || || || |||||||| |||||||||||
Sbjct: 186 atacattgcatcttgccgctcttgagttgcatcacatatagtgttgaa 139


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,320,885
Number of Sequences: 3902068
Number of extensions: 4320885
Number of successful extensions: 78985
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78836
Number of HSP's gapped (non-prelim): 144
length of query: 564
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 541
effective length of database: 17,143,297,704
effective search space: 9274524057864
effective search space used: 9274524057864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top