ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32e14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB079636.1| Oryza sativa (japonica cultivar-group) OsHMGB2 m... 141 3e-30
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
5gb|AF440222.1| Zea mays cultivar B73 HMG-like nucleosome/chromat... 76 1e-10
6emb|Y08297.1|ZMHMGC1 Z.mays mRNA for HMGc1 protein 76 1e-10
7emb|AJ131374.1|ZMA131374 Zea mays hmgc1 gene, exons 1-7 64 5e-07
8emb|Y08298.1|ZMHMGC2 Z.mays mRNA for HMGc2 protein 60 8e-06
9gb|BT016444.1| Zea mays clone Contig277 mRNA sequence 58 3e-05
10emb|AJ006708.1|ZMA6708 Zea mays HMGe gene 46 0.12
11gb|AY105190.1| Zea mays PCO097256 mRNA sequence 46 0.12
12ref|XM_460929.1| Debaryomyces hansenii CBS767 hypothetical prote... 44 0.47
13emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 44 0.47
14dbj|AP002832.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 44 0.47
15gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome... 42 1.8
16gb|AC122833.2| Mus musculus BAC clone RP23-181J12 from 15, compl... 42 1.8
17dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 42 1.8
18gb|AF312033.1|AF312033 Mus musculus acetylcholinesterase (Ache) ... 42 1.8
19emb|AL592214.14| Mouse DNA sequence from clone RP23-212I24 on ch... 42 1.8
20gb|AC150682.2| Mus musculus BAC clone RP24-210N1 from 5, complet... 42 1.8
21ref|XM_637534.1| Dictyostelium discoideum hypothetical protein (... 40 7.3
22ref|XM_506587.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 7.3
23ref|XM_365427.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 7.3
24gb|AC159708.13| Mus musculus 10 BAC RP23-110M21 (Roswell Park Ca... 40 7.3
25gb|AY282923.1| Strongylocentrotus purpuratus polycystic kidney d... 40 7.3
26gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124... 40 7.3
27ref|XR_003508.1| PREDICTED: Mus musculus similar to Alpha-enolas... 40 7.3
28ref|XR_001977.1| PREDICTED: Mus musculus similar to Alpha-enolas... 40 7.3
29gb|AC121353.2| Rattus norvegicus chromosome 1 clone RP32-274I11 ... 40 7.3
30ref|XM_751756.1| Ustilago maydis 521 hypothetical protein (UM007... 40 7.3
31gb|AC115117.5| Mus musculus BAC clone RP23-76J12 from chromosome... 40 7.3
32emb|AJ890015.1| Triticum aestivum partial mRNA for putative high... 40 7.3
33gb|AC161825.13| Mus musculus 10 BAC RP23-35O24 (Roswell Park Can... 40 7.3
34gb|U70480.1|LEU70480 Lycopersicon esculentum abscission polygala... 40 7.3
35ref|XM_785429.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.3
36ref|XM_781060.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.3
37gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 7.3
38gb|AY082396.1| Zea mays knotted1-interacting protein (kip) mRNA,... 40 7.3
39ref|NM_135461.2| Drosophila melanogaster CG4364-RA (CG4364), mRNA 40 7.3
40gb|AY069545.1| Drosophila melanogaster LD27336 full length cDNA 40 7.3
41gb|AC182755.1| Gasterosteus aculeatus clone VMRC28-49K03, comple... 40 7.3
42gb|AC018608.9|AC018608 Homo sapiens chromosome 8, clone RP11-403... 40 7.3
43dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
44dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
45gb|AC007291.24|AC007291 Drosophila melanogaster, chromosome 2L, ... 40 7.3
46ref|NM_214662.1| Strongylocentrotus purpuratus polycystic kidney... 40 7.3
47ref|XM_214456.3| PREDICTED: Rattus norvegicus similar to Alpha e... 40 7.3
48dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
49dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
50dbj|AK108661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
51gb|AE003626.4| Drosophila melanogaster chromosome 2L, section 35... 40 7.3
52gb|AC167686.2| Daphnia pulex clone JGIAZSN-5K3, complete sequence 40 7.3
53gb|AF001001.1|AF001001 Lycopersicon esculentum polygalacturonase... 40 7.3
54emb|BX004791.6| Mouse DNA sequence from clone RP24-233L10 on chr... 40 7.3 
>dbj|AB079636.1| Oryza sativa (japonica cultivar-group) OsHMGB2 mRNA for high
           mobility group box protein 2, complete cds
          Length = 634

 Score =  141 bits (71), Expect = 3e-30
 Identities = 128/147 (87%)
 Strand = Plus / Minus

                                                                       
Query: 364 ctctccttgttctcgaagctggctttggtcttctcatagtcctgcttcttctgtccagcc 423
           |||||||| || |||||| |||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 439 ctctccttcttatcgaagttggccttggtcttctcgtagtcctgcttcttttggccagcc 380

                                                                       
Query: 424 ttctccacataaggtgctttgtcctcatcagacatagatctccacttctcacctgcagcc 483
           || |||||||||||||| || || |  |||||||||| || ||||||||| |||||||||
Sbjct: 379 ttgtccacataaggtgccttctcttgctcagacatagctcgccacttctcccctgcagcc 320

                                      
Query: 484 ttgctcacgttggcgacattcttgttg 510
           |||||||||  ||||||| ||||||||
Sbjct: 319 ttgctcacggcggcgacactcttgttg 293



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 244 ggatacactatttactcatcgtcgtcttcattatcctcatcgctacc 290
           ||||||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct: 571 ggatacactatttactcttcatcgtcctcattttcctcatcgctacc 525
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                            
Query: 376      tcgaagctggctttggtcttctcatagtcctgcttcttctgtccagccttctccacataa 435
                |||||| |||| ||||||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 27244848 tcgaagttggccttggtcttctcgtagtcctgcttcttttggccagccttgtccacataa 27244789

                     
Query: 436      ggtgc 440
                |||||
Sbjct: 27244788 ggtgc 27244784



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 451      tcagacatagatctccacttctcacctgcagccttgctcac 491
                |||||||||| || ||||||||| |||||||||||||||||
Sbjct: 27244481 tcagacatagctcgccacttctcccctgcagccttgctcac 27244441



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 244      ggatacactatttactcatcgtcgtcttcattatcct 280
                ||||||||||||||||| || ||||| ||||| ||||
Sbjct: 27245184 ggatacactatttactcttcatcgtcctcattttcct 27245148
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>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1725_H08
          Length = 155431

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                          
Query: 376    tcgaagctggctttggtcttctcatagtcctgcttcttctgtccagccttctccacataa 435
              |||||| |||| ||||||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 141297 tcgaagttggccttggtcttctcgtagtcctgcttcttttggccagccttgtccacataa 141238

                   
Query: 436    ggtgc 440
              |||||
Sbjct: 141237 ggtgc 141233



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 451    tcagacatagatctccacttctcacctgcagccttgctcac 491
              |||||||||| || ||||||||| |||||||||||||||||
Sbjct: 140930 tcagacatagctcgccacttctcccctgcagccttgctcac 140890



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 244    ggatacactatttactcatcgtcgtcttcattatcct 280
              ||||||||||||||||| || ||||| ||||| ||||
Sbjct: 141633 ggatacactatttactcttcatcgtcctcattttcct 141597
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>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684A08
          Length = 137841

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                         
Query: 376   tcgaagctggctttggtcttctcatagtcctgcttcttctgtccagccttctccacataa 435
             |||||| |||| ||||||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 95519 tcgaagttggccttggtcttctcgtagtcctgcttcttttggccagccttgtccacataa 95460

                  
Query: 436   ggtgc 440
             |||||
Sbjct: 95459 ggtgc 95455



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 451   tcagacatagatctccacttctcacctgcagccttgctcac 491
             |||||||||| || ||||||||| |||||||||||||||||
Sbjct: 95152 tcagacatagctcgccacttctcccctgcagccttgctcac 95112



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 244   ggatacactatttactcatcgtcgtcttcattatcct 280
             ||||||||||||||||| || ||||| ||||| ||||
Sbjct: 95855 ggatacactatttactcttcatcgtcctcattttcct 95819
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>gb|AF440222.1| Zea mays cultivar B73 HMG-like nucleosome/chromatin assembly factor
           D (nfd104) mRNA, complete cds
          Length = 795

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 131/162 (80%)
 Strand = Plus / Minus

                                                                       
Query: 331 tcatcctgagtcttggccttcttggagctcacactctccttgttctcgaagctggctttg 390
           ||||||| |||||| |||||||| |||||    |||||||| || || ||| | || || 
Sbjct: 441 tcatcctcagtcttagccttctttgagcttgtgctctccttcttatcaaagtttgcctta 382

                                                                       
Query: 391 gtcttctcatagtcctgcttcttctgtccagccttctccacataaggtgctttgtcctca 450
           |||||||||||||||||||||||||||||||| |  |||||||| |||   || || | |
Sbjct: 381 gtcttctcatagtcctgcttcttctgtccagcttggtccacatatggttgcttctcttga 322

                                                     
Query: 451 tcagacatagatctccacttctcacctgcagccttgctcacg 492
           || |||||||  | |||||| || ||||| ||||||||||||
Sbjct: 321 tctgacatagcacgccacttttcccctgctgccttgctcacg 280
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>emb|Y08297.1|ZMHMGC1 Z.mays mRNA for HMGc1 protein
          Length = 784

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 131/162 (80%)
 Strand = Plus / Minus

                                                                       
Query: 331 tcatcctgagtcttggccttcttggagctcacactctccttgttctcgaagctggctttg 390
           ||||||| |||||| |||||||| |||||    |||||||| || || ||| | || || 
Sbjct: 438 tcatcctcagtcttagccttctttgagcttgtgctctccttcttatcaaagtttgcctta 379

                                                                       
Query: 391 gtcttctcatagtcctgcttcttctgtccagccttctccacataaggtgctttgtcctca 450
           |||||||||||||||||||||||||||||||| |  |||||||| |||   || || | |
Sbjct: 378 gtcttctcatagtcctgcttcttctgtccagcttggtccacatatggttgcttctcttga 319

                                                     
Query: 451 tcagacatagatctccacttctcacctgcagccttgctcacg 492
           || |||||||  | |||||| || ||||| ||||||||||||
Sbjct: 318 tctgacatagcacgccacttttcccctgctgccttgctcacg 277
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>emb|AJ131374.1|ZMA131374 Zea mays hmgc1 gene, exons 1-7
          Length = 2929

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                            
Query: 391  gtcttctcatagtcctgcttcttctgtccagc 422
            ||||||||||||||||||||||||||||||||
Sbjct: 2102 gtcttctcatagtcctgcttcttctgtccagc 2071



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 38/43 (88%), Gaps = 2/43 (4%)
 Strand = Plus / Minus

                                                       
Query: 226  atttgctacctcgtg--cttggatacactatttactcatcgtc 266
            |||||||||||||||  |||||| ||| | |||||||||||||
Sbjct: 2455 atttgctacctcgtgaccttggagacagtgtttactcatcgtc 2413
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>emb|Y08298.1|ZMHMGC2 Z.mays mRNA for HMGc2 protein
          Length = 828

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                       
Query: 391 gtcttctcatagtcctgcttcttctgtccagccttctccacataaggtgctttgtcctca 450
           |||||||||||||||||||||||||| ||||| |  |||||||| |||   || || |  
Sbjct: 293 gtcttctcatagtcctgcttcttctgcccagcttggtccacatagggttgcttctcttgc 234

                                                     
Query: 451 tcagacatagatctccacttctcacctgcagccttgctcacg 492
           || |||||||| | |||||| || ||||| ||||||||||||
Sbjct: 233 tctgacatagagcgccacttttcccctgctgccttgctcacg 192
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>gb|BT016444.1| Zea mays clone Contig277 mRNA sequence
          Length = 1158

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                       
Query: 391 gtcttctcatagtcctgcttcttctgtccagccttctccacataaggtgctttgtcctca 450
           |||||||||||||||||||||||||| ||||| |  |||||||| |||   || || |  
Sbjct: 366 gtcttctcatagtcctgcttcttctgcccagcttggtccacatagggttgcttctcttgc 307

                                                    
Query: 451 tcagacatagatctccacttctcacctgcagccttgctcac 491
           || |||||||| | |||||| || ||||| |||||||||||
Sbjct: 306 tctgacatagagcgccacttttcccctgctgccttgctcac 266
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>emb|AJ006708.1|ZMA6708 Zea mays HMGe gene
          Length = 684

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 445 tcctcatcagacatagatctccacttctcacctgcagccttgctcac 491
           |||||||| |||||||| | ||||||||| || || |||||||||||
Sbjct: 252 tcctcatccgacatagagcgccacttctccccagccgccttgctcac 206
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>gb|AY105190.1| Zea mays PCO097256 mRNA sequence
          Length = 879

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 445 tcctcatcagacatagatctccacttctcacctgcagccttgctcac 491
           |||||||| |||||||| | ||||||||| || || |||||||||||
Sbjct: 323 tcctcatccgacatagagcgccacttctccccagccgccttgctcac 277
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>ref|XM_460929.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F14135g)
           partial mRNA
          Length = 1953

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 259 tcatcgtcgtcttcattatcctcatc 284
           ||||||||||||||||||| ||||||
Sbjct: 167 tcatcgtcgtcttcattattctcatc 142
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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
               hansenii
          Length = 2336804

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 259     tcatcgtcgtcttcattatcctcatc 284
               ||||||||||||||||||| ||||||
Sbjct: 1131943 tcatcgtcgtcttcattattctcatc 1131918
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>dbj|AP002832.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-651F18, complete
             sequence
          Length = 117898

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 215   cccaactcccaatttgctacct 236
             ||||||||||||||||||||||
Sbjct: 29673 cccaactcccaatttgctacct 29694
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>gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome 15, complete sequence
          Length = 209081

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 387   tttggtcttctcatagtcctg 407
             |||||||||||||||||||||
Sbjct: 52318 tttggtcttctcatagtcctg 52298
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>gb|AC122833.2| Mus musculus BAC clone RP23-181J12 from 15, complete sequence
          Length = 200339

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 387   tttggtcttctcatagtcctg 407
             |||||||||||||||||||||
Sbjct: 95345 tttggtcttctcatagtcctg 95325
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 323     cctcctcatcatcctgagtct 343
               |||||||||||||||||||||
Sbjct: 2969609 cctcctcatcatcctgagtct 2969629
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>gb|AF312033.1|AF312033 Mus musculus acetylcholinesterase (Ache) and D5Ertd655e genes, complete
             cds; ASR2 (Asr2) gene, complete cds, alternatively
             spliced; TRIP6 (Trip6), CIP1 (Cip1), EPHB4 (Ephb4), ZAN
             (Zan), EPO (Epo), RPP20 (Rpp20), PERQ1 (Perq1), GNB2
             (Gnb2), and BAF53B (Baf53b) genes, complete cds; and TFR2
             (Tfr2) gene, partial cds
          Length = 296820

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 461   atctccacttctcacctgcag 481
             |||||||||||||||||||||
Sbjct: 32836 atctccacttctcacctgcag 32856
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>emb|AL592214.14| Mouse DNA sequence from clone RP23-212I24 on chromosome 1, complete
              sequence
          Length = 194720

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 330    atcatcctgagtcttggccttcttg 354
              ||||||||||||||||| |||||||
Sbjct: 187116 atcatcctgagtcttggtcttcttg 187140
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>gb|AC150682.2| Mus musculus BAC clone RP24-210N1 from 5, complete sequence
          Length = 164951

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 461   atctccacttctcacctgcag 481
             |||||||||||||||||||||
Sbjct: 41489 atctccacttctcacctgcag 41509
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>ref|XM_637534.1| Dictyostelium discoideum hypothetical protein (DDB0169229), partial
           mRNA
          Length = 2085

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 501 attcttgttgttggggttct 520
           ||||||||||||||||||||
Sbjct: 283 attcttgttgttggggttct 264
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>ref|XM_506587.1| PREDICTED Oryza sativa (japonica cultivar-group), P0597G07.108
            patrial mRNA
          Length = 1493

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 40   cagctcgtggcattctcggctctc 63
            |||||| |||||||||||||||||
Sbjct: 1048 cagctcctggcattctcggctctc 1071
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>ref|XM_365427.1| Magnaporthe grisea 70-15 hypothetical protein (MG02129.4) partial
            mRNA
          Length = 2598

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 261  atcgtcgtcttcattatcctcatc 284
            |||||||||||||| |||||||||
Sbjct: 1293 atcgtcgtcttcatcatcctcatc 1270
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>gb|AC159708.13| Mus musculus 10 BAC RP23-110M21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 238622

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   acttctcacctgcagccttg 486
             ||||||||||||||||||||
Sbjct: 65984 acttctcacctgcagccttg 65965
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>gb|AY282923.1| Strongylocentrotus purpuratus polycystic kidney disease protein 2
            (PKD2) mRNA, complete cds
          Length = 3539

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 258  ctcatcgtcgtcttcattatcctcatcg 285
            |||||||||||| |||| ||||||||||
Sbjct: 2495 ctcatcgtcgtcatcatcatcctcatcg 2468
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>gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4,
             complete sequence
          Length = 183648

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 501   attcttgttgttggggttct 520
             ||||||||||||||||||||
Sbjct: 94231 attcttgttgttggggttct 94212
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>ref|XR_003508.1| PREDICTED: Mus musculus similar to Alpha-enolase
            (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase)
            (NNE) (Enolase 1) (LOC637620), mRNA
          Length = 1184

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 467  acttctcacctgcagccttg 486
            ||||||||||||||||||||
Sbjct: 1116 acttctcacctgcagccttg 1097
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>ref|XR_001977.1| PREDICTED: Mus musculus similar to Alpha-enolase
            (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase)
            (NNE) (Enolase 1) (LOC637620), mRNA
          Length = 1184

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 467  acttctcacctgcagccttg 486
            ||||||||||||||||||||
Sbjct: 1116 acttctcacctgcagccttg 1097
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>gb|AC121353.2| Rattus norvegicus chromosome 1 clone RP32-274I11 map q34, complete
           sequence
          Length = 142440

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 467 acttctcacctgcagccttg 486
           ||||||||||||||||||||
Sbjct: 525 acttctcacctgcagccttg 544
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>ref|XM_751756.1| Ustilago maydis 521 hypothetical protein (UM00702.1) partial mRNA
          Length = 5868

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 259  tcatcgtcgtcttcattatcctcatcgc 286
            |||||||||||||||| ||| |||||||
Sbjct: 1544 tcatcgtcgtcttcatcatcatcatcgc 1517
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>gb|AC115117.5| Mus musculus BAC clone RP23-76J12 from chromosome 18, complete sequence
          Length = 197626

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     gcaacttctcaaaccatgag 104
              ||||||||||||||||||||
Sbjct: 122483 gcaacttctcaaaccatgag 122502
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>emb|AJ890015.1| Triticum aestivum partial mRNA for putative high mobility group
           protein (hmg1 gene), cultivar Wyuna, from endosperm
           tissue
          Length = 638

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 340 gtcttggccttcttggagct 359
           ||||||||||||||||||||
Sbjct: 296 gtcttggccttcttggagct 277
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>gb|AC161825.13| Mus musculus 10 BAC RP23-35O24 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 199841

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 467   acttctcacctgcagccttg 486
             ||||||||||||||||||||
Sbjct: 72957 acttctcacctgcagccttg 72976
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>gb|U70480.1|LEU70480 Lycopersicon esculentum abscission polygalacturonase (TAPG2) mRNA
           complete cds
          Length = 1277

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 501 attcttgttgttggggttct 520
           ||||||||||||||||||||
Sbjct: 478 attcttgttgttggggttct 459
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>ref|XM_785429.1| PREDICTED: Strongylocentrotus purpuratus similar to CG2839-PA
           (LOC585610), mRNA
          Length = 3282

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 tcgtcttcattatcctcatc 284
           ||||||||||||||||||||
Sbjct: 827 tcgtcttcattatcctcatc 808
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>ref|XM_781060.1| PREDICTED: Strongylocentrotus purpuratus similar to neuralized,
           possibly N-myristoylated (XR998) (LOC581036), mRNA
          Length = 897

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 ctcatcgtcgtcttcattat 277
           ||||||||||||||||||||
Sbjct: 654 ctcatcgtcgtcttcattat 673
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   ttggcgacattcttgttgtt 512
             ||||||||||||||||||||
Sbjct: 62426 ttggcgacattcttgttgtt 62407
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>gb|AY082396.1| Zea mays knotted1-interacting protein (kip) mRNA, complete cds
          Length = 1401

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 322  gcctcctcatcatcctgagtcttg 345
            ||||||||||| ||||||||||||
Sbjct: 1193 gcctcctcatcctcctgagtcttg 1216
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>ref|NM_135461.2| Drosophila melanogaster CG4364-RA (CG4364), mRNA
          Length = 2123

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  tcatcgtcgtcttcattatc 278
            ||||||||||||||||||||
Sbjct: 1676 tcatcgtcgtcttcattatc 1657
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>gb|AY069545.1| Drosophila melanogaster LD27336 full length cDNA
          Length = 2141

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  tcatcgtcgtcttcattatc 278
            ||||||||||||||||||||
Sbjct: 1676 tcatcgtcgtcttcattatc 1657
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>gb|AC182755.1| Gasterosteus aculeatus clone VMRC28-49K03, complete sequence
          Length = 136793

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    agatagcaggatagcaaact 197
              ||||||||||||||||||||
Sbjct: 118683 agatagcaggatagcaaact 118664
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>gb|AC018608.9|AC018608 Homo sapiens chromosome 8, clone RP11-403P13, complete sequence
          Length = 200863

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 260   catcgtcgtcttcattatcctcat 283
             ||||||| ||||||||||||||||
Sbjct: 85923 catcgtcatcttcattatcctcat 85946
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 40       cagctcgtggcattctcggctctc 63
                |||||| |||||||||||||||||
Sbjct: 29313890 cagctcctggcattctcggctctc 29313913
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 257      actcatcgtcgtcttcattatcctcatc 284
                ||||||||||||| |||| |||||||||
Sbjct: 26739413 actcatcgtcgtcgtcatcatcctcatc 26739440
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>gb|AC007291.24|AC007291 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR02I05,
              complete sequence
          Length = 176075

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    tcatcgtcgtcttcattatc 278
              ||||||||||||||||||||
Sbjct: 110897 tcatcgtcgtcttcattatc 110878
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>ref|NM_214662.1| Strongylocentrotus purpuratus polycystic kidney disease protein 2
            (pkd2), mRNA
          Length = 3539

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 258  ctcatcgtcgtcttcattatcctcatcg 285
            |||||||||||| |||| ||||||||||
Sbjct: 2495 ctcatcgtcgtcatcatcatcctcatcg 2468
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>ref|XM_214456.3| PREDICTED: Rattus norvegicus similar to Alpha enolase
           (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase)
           (NNE) (Enolase 1) (LOC291065), mRNA
          Length = 938

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 467 acttctcacctgcagccttg 486
           ||||||||||||||||||||
Sbjct: 643 acttctcacctgcagccttg 624
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>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0597G07
          Length = 152928

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 40     cagctcgtggcattctcggctctc 63
              |||||| |||||||||||||||||
Sbjct: 102579 cagctcctggcattctcggctctc 102602
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>dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0694A04
          Length = 141476

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 257   actcatcgtcgtcttcattatcctcatc 284
             ||||||||||||| |||| |||||||||
Sbjct: 86505 actcatcgtcgtcgtcatcatcctcatc 86532
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>dbj|AK108661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F02, full
            insert sequence
          Length = 1493

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 40   cagctcgtggcattctcggctctc 63
            |||||| |||||||||||||||||
Sbjct: 1048 cagctcctggcattctcggctctc 1071
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>gb|AE003626.4| Drosophila melanogaster chromosome 2L, section 35 of 83 of the
           complete sequence
          Length = 264919

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 259 tcatcgtcgtcttcattatc 278
           ||||||||||||||||||||
Sbjct: 506 tcatcgtcgtcttcattatc 525
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>gb|AC167686.2| Daphnia pulex clone JGIAZSN-5K3, complete sequence
          Length = 36132

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   tcttcgacctcagatttgga 314
             ||||||||||||||||||||
Sbjct: 12661 tcttcgacctcagatttgga 12642
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>gb|AF001001.1|AF001001 Lycopersicon esculentum polygalacturonase 2 (TAPG2) gene, complete
            cds
          Length = 7991

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 501  attcttgttgttggggttct 520
            ||||||||||||||||||||
Sbjct: 2682 attcttgttgttggggttct 2663
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>emb|BX004791.6| Mouse DNA sequence from clone RP24-233L10 on chromosome 4, complete
             sequence
          Length = 123244

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    gctctctctctgctaataca 77
             ||||||||||||||||||||
Sbjct: 78063 gctctctctctgctaataca 78082


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,329,829
Number of Sequences: 3902068
Number of extensions: 6329829
Number of successful extensions: 123988
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123747
Number of HSP's gapped (non-prelim): 238
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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