>YAQ5_SCHPO (Q10105) Putative translational activator C18G6.05c (GCN1 homolog)|
          Length = 2670

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 24/62 (38%), Positives = 38/62 (61%)
 Frame = -3

Query: 544  SSTEVRRRSLSCIKAAAKINHSALATHISILGPAIGDTLKDSSSPVRIAAERCAVHVFQL 365
            +S + RR +L  I+  +K N+S +  HISIL PAI   ++    PV++AAE   + +FQL
Sbjct: 2538 TSQDSRRLALLIIRVVSKENYSLIKPHISILAPAIFGCVRAIVIPVKLAAEAAFLALFQL 2597

Query: 364  TK 359
             +
Sbjct: 2598 VE 2599

>GCN1_YEAST (P33892) Translational activator GCN1|
          Length = 2672

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = -3

Query: 544  SSTEVRRRSLSCIKAAAKINHS-ALATHISILGPAIGDTLKDSSSPVRIAAERCAVHVFQ 368
            +ST+VRR +L  I+  A+      +  +  ++GP++   L+D   P+++AAE+  + +F+
Sbjct: 2525 NSTDVRRLALVVIRTLARFKFDECIKQYFDVVGPSVFSCLRDPVIPIKLAAEKAYLALFK 2584

Query: 367  LTKGAD 350
            L +  D
Sbjct: 2585 LVEEDD 2590

>HEATR_CAEEL (Q23495) Hypothetical protein ZK430.1 in chromosome II|
          Length = 1650

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -3

Query: 550  RDSSTEVRRRSLSCIKAAAKINHSALATHISILGPAIGDTLKDSSSPVRIAAER 389
            RDS  ++R R+L  ++   K     +  H+SIL P + + ++D +  V    ++
Sbjct: 1577 RDSRAKIRYRALIVLELLIKEIGDGVQPHLSILLPFLNELIEDENKQVEAQCQK 1630

>Y5738_STRCO (O86835) Hypothetical zinc protease SCO5738 (EC 3.4.99.-)|
          Length = 459

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -1

Query: 666 MTSSLFVKPLRKLWGGYSVTSYNSGAAPCNLF 571
           M+S LF +   K    YSV SY SG A C LF
Sbjct: 307 MSSRLFQEVREKRGLAYSVYSYTSGFADCGLF 338

>NUP93_MOUSE (Q8BJ71) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93|
           kDa nucleoporin) (CBP-interacting protein 4)
          Length = 819

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 22/66 (33%), Positives = 36/66 (54%)
 Frame = +2

Query: 314 HVGEMLLRSGNIICPFGQLENMDGTALCSYTYW*TTILQSITNCRAQYRDMCSKSGMIYL 493
           ++ E+LL + NI+  F Q + + GT+  S T     I    +  R+Q R + + +GMI  
Sbjct: 744 NLSEVLLATMNIL--FTQFKRLKGTSPSSATRPQRVIEDRDSQLRSQARALITFAGMIPY 801

Query: 494 RSSFDT 511
           R+S DT
Sbjct: 802 RTSGDT 807


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,711,718
Number of Sequences: 219361
Number of extensions: 1875097
Number of successful extensions: 4273
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4273
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)