ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32d22 |
|---|---|
| Clone Library Name | barley_pub |
>APMAP_MOUSE (Q9D7N9) Adipocyte plasma membrane-associated protein (Protein| DD16) Length = 415 Score = 70.5 bits (171), Expect = 4e-12 Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 5/151 (3%) Frame = -2 Query: 677 VSLSKDGSFFVFCEGSRGRLSRYWLKGEKAGTVDLFAI-LPGFPDNVRTNDKGEFWVAIH 501 V LS + F + E + R+ R ++ G G D+F +PGFPDN+R + G +WVA Sbjct: 261 VQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAA 320 Query: 500 CRRS----AYARLLSHRVQLRKFLLSLPIPAKYHYLMQIGGNLHALIIKYSPEGEVLDIL 333 R+ + LS + +++ + + +M+ ++L+++ S G L Sbjct: 321 TIRANPGFSMLDFLSDKPFIKRMIFKM---FSQETVMKFVPR-YSLVLEVSDSGAFRRSL 376 Query: 332 EDTKGQVVRAVSEVEEKDGKLWIGSVLMPFI 240 D GQVV VSE E DG L++GS PFI Sbjct: 377 HDPDGQVVTYVSEAHEHDGYLYLGSFRSPFI 407
>APMAP_HUMAN (Q9HDC9) Adipocyte plasma membrane-associated protein (BSCv| protein) Length = 416 Score = 67.8 bits (164), Expect = 3e-11 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 5/151 (3%) Frame = -2 Query: 677 VSLSKDGSFFVFCEGSRGRLSRYWLKGEKAGTVDLFAI-LPGFPDNVRTNDKGEFWVAIH 501 V LS F + E + R+ R ++ G G DLF +PGFPDN+R + G +WV + Sbjct: 262 VQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMS 321 Query: 500 CRRS----AYARLLSHRVQLRKFLLSLPIPAKYHYLMQIGGNLHALIIKYSPEGEVLDIL 333 R + LS R +++ + L +M+ ++L+++ S G L Sbjct: 322 TIRPNPGFSMLDFLSERPWIKRMIFKL---FSQETVMKFVPR-YSLVLELSDSGAFRRSL 377 Query: 332 EDTKGQVVRAVSEVEEKDGKLWIGSVLMPFI 240 D G V +SEV E DG L++GS PF+ Sbjct: 378 HDPDGLVATYISEVHEHDGHLYLGSFRSPFL 408
>STS3_ARATH (P92976) Strictosidine synthase 3 precursor (EC 4.3.3.2) (SS-3)| Length = 329 Score = 58.2 bits (139), Expect = 2e-08 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 3/150 (2%) Frame = -2 Query: 674 SLSKDGSFFVFCEGSRGRLSRYWLKGEKAGTVDLFAILPGFPDNV-RTNDKGEFWVAIHC 498 ++S DGSF + + ++ + RYW+KG KAGT + F PDN+ R G FWVA Sbjct: 210 AVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSNPDNIKRIGSTGNFWVA--- 266 Query: 497 RRSAYARLLSHRVQLRKFLLSLPIPAKYHYLMQIGGNLHALIIKYSPEGEVLDI--LEDT 324 + G + +K S G+VL L+D Sbjct: 267 ----------------------------SVVNSATGPTNPSAVKVSSAGKVLQTIPLKDK 298 Query: 323 KGQVVRAVSEVEEKDGKLWIGSVLMPFIAV 234 G + VSEV E G+L+IG++ PF + Sbjct: 299 FGDTL--VSEVNEYKGQLYIGALFGPFAGI 326
>STS1_ARATH (P94111) Strictosidine synthase 1 precursor (EC 4.3.3.2) (SS-1)| Length = 335 Score = 57.4 bits (137), Expect = 4e-08 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 3/157 (1%) Frame = -2 Query: 674 SLSKDGSFFVFCEGSRGRLSRYWLKGEKAGTVDLFAILPGFPDNV-RTNDKGEFWVAIHC 498 ++S DGSF + + ++ + RYW+KG KAG+ + F PDN+ R G FWVA Sbjct: 208 AVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSNPDNIKRIGSTGNFWVA--- 264 Query: 497 RRSAYARLLSHRVQLRKFLLSLPIPAKYHYLMQIGGNLHALIIKYSPEGEVLDI--LEDT 324 + + +P + +K + GEVL L+D Sbjct: 265 ----------------SVVNKIIVPT------------NPSAVKVNSNGEVLQTIPLKDK 296 Query: 323 KGQVVRAVSEVEEKDGKLWIGSVLMPFIAVFDYAKES 213 G + +SEV E +G L+IG++ PF + K S Sbjct: 297 FGDTL--LSEVNEFEGNLYIGTLTGPFAGILKLEKGS 331
>STSY_CATRO (P18417) Strictosidine synthase precursor (EC 4.3.3.2)| Length = 352 Score = 55.8 bits (133), Expect = 1e-07 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 5/154 (3%) Frame = -2 Query: 671 LSKDGSFFVFCEGSRGRLSRYWLKGEKAGTVDLFAILPGFPDNVRTNDKGEFWVAI--HC 498 +S DGSF V E R+ +YWL+G K G+ + +P P N++ N G FWV+ Sbjct: 220 ISADGSFVVVAEFLSNRIVKYWLEGPKKGSAEFLVTIPN-PGNIKRNSDGHFWVSSSEEL 278 Query: 497 RRSAYARLLSHRVQLRKF---LLSLPIPAKYHYLMQIGGNLHALIIKYSPEGEVLDILED 327 + R++S ++ F L +P+P Y EGE + Sbjct: 279 DGGQHGRVVSRGIKFDGFGNILQVIPLPPPY-------------------EGEHFE---- 315 Query: 326 TKGQVVRAVSEVEEKDGKLWIGSVLMPFIAVFDY 225 +++E DG L+IGS+ + + Y Sbjct: 316 ----------QIQEHDGLLYIGSLFHSSVGILVY 339
>STSY_RAUSE (P68175) Strictosidine synthase precursor (EC 4.3.3.2)| Length = 344 Score = 53.1 bits (126), Expect = 7e-07 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 4/156 (2%) Frame = -2 Query: 671 LSKDGSFFVFCEGSRGRLSRYWLKGEKAGTVDLFAILPGFPDNVRTNDKGEFWVAIHCRR 492 +S D SF + E ++ +YWL+G K GT ++ +P P N++ N G FWV+ Sbjct: 214 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS--- 269 Query: 491 SAYARLLSHRVQLRKFLLSLPIPAKYHYLMQIGGNLHALI----IKYSPEGEVLDILEDT 324 ++ GN+H + IK+ G +L+++ Sbjct: 270 -----------------------------EELDGNMHGRVDPKGIKFDEFGNILEVIPLP 300 Query: 323 KGQVVRAVSEVEEKDGKLWIGSVLMPFIAVFDYAKE 216 +++E DG L+IG++ + + Y K+ Sbjct: 301 PPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKK 336
>STSY_RAUMA (P68174) Strictosidine synthase precursor (EC 4.3.3.2) (Fragment)| Length = 342 Score = 53.1 bits (126), Expect = 7e-07 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 4/156 (2%) Frame = -2 Query: 671 LSKDGSFFVFCEGSRGRLSRYWLKGEKAGTVDLFAILPGFPDNVRTNDKGEFWVAIHCRR 492 +S D SF + E ++ +YWL+G K GT ++ +P P N++ N G FWV+ Sbjct: 212 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS--- 267 Query: 491 SAYARLLSHRVQLRKFLLSLPIPAKYHYLMQIGGNLHALI----IKYSPEGEVLDILEDT 324 ++ GN+H + IK+ G +L+++ Sbjct: 268 -----------------------------EELDGNMHGRVDPKGIKFDEFGNILEVIPLP 298 Query: 323 KGQVVRAVSEVEEKDGKLWIGSVLMPFIAVFDYAKE 216 +++E DG L+IG++ + + Y K+ Sbjct: 299 PPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKK 334
>APBA3_HUMAN (O96018) Amyloid beta A4 precursor protein-binding family A member| 3 (Neuron-specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma) Length = 575 Score = 32.0 bits (71), Expect = 1.8 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Frame = -1 Query: 564 PAWVPGQREDQRQGRILGSNPLPAQRIRPAL---ESPRAAE--EVLAQPPDPRQVPLP 406 P WV G +Q R S+P P P + E P A+ E LA P P++VP P Sbjct: 152 PEWVEGASAEQEGSRSSSSSPEPWLETVPLVTPEEPPAGAQSPETLASYPAPQEVPGP 209
>MURE_COREF (Q8FNT5) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 526 Score = 30.8 bits (68), Expect = 4.0 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +3 Query: 321 FSVLQDVEH--LALGAVLDDQRVQVAADLHQVVVLGGDREAEQELP 452 F + D H A+ AVLD R Q+ L V+ GGDR+A + P Sbjct: 370 FLAVVDYAHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDATKRAP 415
>NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplast precursor| Length = 1385 Score = 30.4 bits (67), Expect = 5.2 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -1 Query: 525 GRILGSNPLPAQRIRPALESPRAAEEVLAQPP-DPRQVPLPDAD 397 G LGS PLP +R+ E +A PP D + P+PDAD Sbjct: 1340 GADLGSGPLPRRRLEDQDADYYEEPESMALPPLDAVRRPMPDAD 1383
>FOXQ1_HUMAN (Q9C009) Forkhead box protein Q1 (Hepatocyte nuclear factor 3| forkhead homolog 1) (HNF-3/forkhead-like protein 1) (HFH-1) Length = 403 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/47 (36%), Positives = 20/47 (42%) Frame = -1 Query: 588 RNRRSLRHPAWVPGQREDQRQGRILGSNPLPAQRIRPALESPRAAEE 448 R R S R P PG R ++ G P PA P + SP EE Sbjct: 213 RKRLSHRAPVPAPGLRPEEAPGLPAAPPPAPAAPASPRMRSPARQEE 259
>CYL1_BOVIN (P35662) Cylicin-1 (Cylicin I) (Multiple-band polypeptide I)| Length = 667 Score = 30.0 bits (66), Expect = 6.7 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 11/56 (19%) Frame = -1 Query: 534 QRQGRILGSNPLPAQRIRPALE-------SPRAAEEVLAQ----PPDPRQVPLPDA 400 + +G+ +G+ +P R RP L SPR Q PP PR PLP+A Sbjct: 605 KEKGKKIGTGRVPPSRERPPLPPCEPILPSPRVKRLCRCQMPPPPPKPRYAPLPEA 660
>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel| [Contains: Glutamic acid-rich protein (GARP); Cyclic-nucleotide-gated cation channel 4 (CNG channel 4) (CNG-4) (Cyclic nucleotide-gated cation channel modulatory subunit)] Length = 1394 Score = 30.0 bits (66), Expect = 6.7 Identities = 13/49 (26%), Positives = 24/49 (48%) Frame = -1 Query: 549 GQREDQRQGRILGSNPLPAQRIRPALESPRAAEEVLAQPPDPRQVPLPD 403 G R++ + P PA I+P L++ + PP+P + P+P+ Sbjct: 188 GWRDEPTDAALGPEPPGPALEIKPMLQAQESPSLPAPGPPEPEEEPIPE 236
>ATG4_YARLI (Q6CH28) Probable cysteine protease ATG4 (EC 3.4.22.-)| (Autophagy-related protein 4) Length = 545 Score = 30.0 bits (66), Expect = 6.7 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 3/80 (3%) Frame = +3 Query: 243 EGHENGSYPKLAILLLHLAYGSHHLPFSVLQDVEHLALGAVLDDQRVQVAADLHQVVVLG 422 +G S K + ++H+ H++P S ++ E++++G DD V V +V + Sbjct: 374 KGSLTASKEKTSSQIVHIHPSRHNIP-SFDEEDEYVSIGGASDDDFVDVTKRARKVAAMT 432 Query: 423 GDREAEQELPQL---HAVTQ 473 G+ + + P + H VT+ Sbjct: 433 GNTGSGRSSPSILDSHLVTE 452
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.6 bits (65), Expect = 8.8 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 5/75 (6%) Frame = -1 Query: 591 GRNRRSLRHPAWVPGQREDQRQGRILGS-----NPLPAQRIRPALESPRAAEEVLAQPPD 427 GR RR + P R+ Q++ G +P P +R R +P PP Sbjct: 518 GRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPP 577 Query: 426 PRQVPLPDADRRQPA 382 R+ P P RR P+ Sbjct: 578 RRRTPSPPPRRRSPS 592
>ISY1_USTMA (Q4PEZ0) Pre-mRNA-splicing factor ISY1| Length = 351 Score = 29.6 bits (65), Expect = 8.8 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = -1 Query: 594 EGRNRRSLRHPAWVPGQREDQRQGR-ILGSNPLPAQRIRPALESPRAAEEVLAQPPDPRQ 418 E ++R+ + P +R QG I ++ A+ R LE P A+ + P D + Sbjct: 264 ESTSKRAPQDELQTPAKRHKNEQGHPIPPTHHADAEPSRTTLEPPSVADYSIFSPEDLQP 323 Query: 417 VPLPD 403 P+PD Sbjct: 324 PPIPD 328 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,111,840 Number of Sequences: 219361 Number of extensions: 1852729 Number of successful extensions: 6427 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 6032 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6410 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
