ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32d19 |
|---|---|
| Clone Library Name | barley_pub |
>BXDC1_ORYSA (Q9AWM9) Brix domain-containing protein 1 homolog| Length = 310 Score = 190 bits (482), Expect = 2e-48 Identities = 87/118 (73%), Positives = 108/118 (91%) Frame = -2 Query: 503 CTAISPTTVYMMHCALRLKRSGTSIPRMELVEVGPSMDLVLRRHRQAADSLQKEAMKAPG 324 CTAISPTTVYMMHCALRLKRSGTSIPR+ELVEVGPSMDLV+RRHR +SL+KEAMK Sbjct: 190 CTAISPTTVYMMHCALRLKRSGTSIPRIELVEVGPSMDLVVRRHRYPVESLKKEAMKTAD 249 Query: 323 HAKKVKNVTDHPIEGKRGRIYIPDQEVSKLTVTSNIKGLKRERRDAKKNKEHSKKQKV 150 HAKK+KNVT P+ GK G++YIPDQ+++K+++++++KGLKRERR+AKKNK+HSKKQK+ Sbjct: 250 HAKKMKNVTKDPVHGKLGKVYIPDQQIAKMSLSNDVKGLKRERREAKKNKDHSKKQKI 307
>BXDC1_ARATH (Q9LUG5) Brix domain-containing protein 1 homolog| Length = 314 Score = 129 bits (324), Expect = 4e-30 Identities = 68/126 (53%), Positives = 91/126 (72%), Gaps = 3/126 (2%) Frame = -2 Query: 503 CTAISPTTVYMMHCALRLKRSGTSIPRMELVEVGPSMDLVLRRHRQAADSLQKEAMKAPG 324 C+AISPT V++ HCAL+LK+SG+ +PRMELVEVGPSMDLV+RR+R DSL KEAM+ Sbjct: 189 CSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLMKEAMRTSK 248 Query: 323 H--AKKVKNVTDHPIEGKRGRIYIPDQEVSKLTVTSNIKGLKRERRDAK-KNKEHSKKQK 153 KK KNV + GK G+IY+PDQ++ ++ + KG KRER+DAK K+KE + +K Sbjct: 249 DKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKDAKLKHKEETVAKK 308 Query: 152 VGESPE 135 + S E Sbjct: 309 MKVSSE 314
>BXDC1_HUMAN (Q9H7B2) Brix domain-containing protein 1| Length = 306 Score = 76.6 bits (187), Expect = 3e-14 Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 2/111 (1%) Frame = -2 Query: 479 VYMMHCALRLKRSGTSIPRMELVEVGPSMDLVLRRHRQAADSLQKEAMKAPG--HAKKVK 306 +Y L LK+SG PR+EL E+GPS+DLVLRR A+D L K +MK P KK K Sbjct: 193 IYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKLSMKMPKALKPKKKK 252 Query: 305 NVTDHPIEGKRGRIYIPDQEVSKLTVTSNIKGLKRERRDAKKNKEHSKKQK 153 N++ GRI++ Q++SKL T +KGLK+ R + ++H KK K Sbjct: 253 NISHDTFGTTYGRIHMQKQDLSKLQ-TRKMKGLKK-RPAERITEDHEKKSK 301
>BXDC1_MOUSE (Q9JJ80) Brix domain-containing protein 1| Length = 306 Score = 72.8 bits (177), Expect = 5e-13 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 2/112 (1%) Frame = -2 Query: 479 VYMMHCALRLKRSGTSIPRMELVEVGPSMDLVLRRHRQAADSLQKEAMKAPG--HAKKVK 306 VY L LK+SG PR+EL E+GPS+DLV+RR A+D L K +MK P KK K Sbjct: 193 VYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLASDDLYKLSMKVPKALKPKKRK 252 Query: 305 NVTDHPIEGKRGRIYIPDQEVSKLTVTSNIKGLKRERRDAKKNKEHSKKQKV 150 N++ GRI++ Q++SKL T +KGLK+ + + + K +++ Sbjct: 253 NISQDTFGTTFGRIHMQKQDLSKLQ-TRKMKGLKKRPAENGVDDQGKKSKRI 303
>BXDC1_DROME (Q9VEB3) Brix domain-containing protein 1 homolog| Length = 320 Score = 68.2 bits (165), Expect = 1e-11 Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Frame = -2 Query: 500 TAISPTTVYMMHCALRLKRSGTSIPRMELVEVGPSMDLVLRRHRQAADSLQKEAMKAPGH 321 T + M + LK+SG PR+EL E+GPS D +RR + A++ L K+A K P Sbjct: 186 TVTDDMNILMRSYRILLKKSGQRTPRIELEEIGPSADFSIRRTKIASEDLYKQARKQPKQ 245 Query: 320 AK--KVKNVTDHPIEGKRGRIYIPDQEVSKLTVTSNIKGLKRERRDAKKNKEHSK 162 K K KN++ + +GR+++ Q+ + T +K L++ + K+N++ K Sbjct: 246 LKVGKKKNISTDALGNTKGRVHLGKQQTGSIQ-TRRVKALRKTPEEKKENRQRKK 299
>BXDC1_SCHPO (Q9UUG1) Brix domain-containing protein 1 homolog| Length = 317 Score = 60.5 bits (145), Expect = 3e-09 Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 5/112 (4%) Frame = -2 Query: 455 RLKRSGTSIPRMELVEVGPSMDLVLRRHRQAADSLQKEAMKAP--GHAKKVKNVTDHPIE 282 +L ++ T++PR+EL E+GP +D +RR + A + +EA+K P K KNV I Sbjct: 207 KLLKTKTNLPRVELEEMGPRIDFNIRRVQPAESDVLEEALKKPKTQEPKPKKNVDVDIIG 266 Query: 281 GKRGRIYIPDQEVSKLTVTSNIKGLKR---ERRDAKKNKEHSKKQKVGESPE 135 K GRI++ Q++ L T +KGLKR ER D++ + ++ + ++ E Sbjct: 267 NKVGRIHVDQQDLGNLQ-TRKMKGLKRSVEEREDSENEEVEIEEDVISDASE 317
>BXDC1_CAEEL (Q9N3F0) Brix domain-containing protein 1 homolog| Length = 297 Score = 49.7 bits (117), Expect = 4e-06 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Frame = -2 Query: 500 TAISPTTVYMMHCALRLKRSGTSIPRMELVEVGPSMDLVLRRHRQAADSLQKEAMKAPG- 324 TA+ T + + LK+S T+ PR+EL E+GPS+ + R + A D+L K A K P Sbjct: 184 TALDETNLALRVYRPMLKKSATATPRVELAEMGPSISFEVMRKKLADDALFKLACKKPKA 243 Query: 323 -HAKKVKNVTDHPIEGKRGRIYIPDQEVSKLTVTSNIKGLKR 201 K+ KN+++ + R+++ Q + T +K L++ Sbjct: 244 LMKKRRKNLSEDVFGNQLARVHVGKQRTDDIQ-TRKVKALRK 284
>RPF2_YEAST (P36160) Ribosome biogenesis protein RPF2| Length = 344 Score = 48.1 bits (113), Expect = 1e-05 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Frame = -2 Query: 446 RSGTSIPRMELVEVGPSMDLVLRRHRQAADSLQKEAMKAPG--HAKKVKNVTDHPIEGKR 273 + G +PR+ELVE+GP +D + R + + EA K P K KNV + K Sbjct: 213 QGGKRLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGDKL 272 Query: 272 GRIYIPDQEVSKLTVTSNIKGLK 204 GRI++ Q++ KL T +KGLK Sbjct: 273 GRIHMGKQDLGKLQ-TRKMKGLK 294
>CTGE5_HUMAN (O15320) Cutaneous T-cell lymphoma-associated antigen 5 (cTAGE-5| protein) (cTAGE family member 5) (Meningioma-expressed antigen 6/11) (MEA6/MEA11) Length = 804 Score = 34.3 bits (77), Expect = 0.20 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Frame = -2 Query: 359 DSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIYIPDQEVSKL--TVTSNIKGLKRERRDA 186 D+ K A+K HA K+ N + +EG+R +IYI EV K +T +IK L+ E+ Sbjct: 306 DNPPKGALKKLIHAAKL-NASLKTLEGERNQIYIQLSEVDKTKEELTEHIKNLQTEQASL 364 Query: 185 KKNKEHSKKQ 156 + H + + Sbjct: 365 QSENTHFENE 374
>Y111_ENCCU (Q8STB5) Hypothetical protein ECU01_0110/ECU01_1500/ECU08_0040| Length = 592 Score = 32.7 bits (73), Expect = 0.57 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%) Frame = -2 Query: 389 LVLRRHRQAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIYIPDQEVSKLTVTSNIKG 210 L+L H++ + KE + KK KN+ I K + Q + + N+K Sbjct: 262 LLLDAHKEHGGDVTKELVMQMLLGKKGKNIDKRYIN-KVANVVKERQRRREREIEKNMKE 320 Query: 209 LKRERRDAK-----KNKEHSKKQKVGES 141 L R+ AK K+KE +K +K GES Sbjct: 321 LMRDEEKAKSKEKAKSKEKAKSKKKGES 348
>IWS1_HUMAN (Q96ST2) IWS1-like protein| Length = 819 Score = 32.3 bits (72), Expect = 0.74 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Frame = -2 Query: 368 QAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIY----IPDQEVSKLTVTSNIKGLKR 201 Q S+ +E +K G + V + HP E + + I + +TSN KG+ R Sbjct: 642 QELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 701 Query: 200 ERRDAKKNKEHSKKQKV----GESPE*PLEK 120 E R+ + ++ +++++ G++P LEK Sbjct: 702 EEREQRDLEQMPQRRRMNSTGGQTPRRDLEK 732
>IWS1_RAT (Q3SWT4) IWS1-like protein| Length = 764 Score = 32.3 bits (72), Expect = 0.74 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Frame = -2 Query: 368 QAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIY----IPDQEVSKLTVTSNIKGLKR 201 Q S+ +E +K G + V + HP E + + I + +TSN KG+ R Sbjct: 588 QELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 647 Query: 200 ERRDAKKNKEHSKKQKV----GESPE*PLEK 120 E R+ + ++ +++++ G++P LEK Sbjct: 648 EEREQRDLEQMPQRRRMSSTGGQTPRRDLEK 678
>IWS1_MOUSE (Q8C1D8) IWS1-like protein| Length = 766 Score = 32.3 bits (72), Expect = 0.74 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Frame = -2 Query: 368 QAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIY----IPDQEVSKLTVTSNIKGLKR 201 Q S+ +E +K G + V + HP E + + I + +TSN KG+ R Sbjct: 589 QELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 648 Query: 200 ERRDAKKNKEHSKKQKV----GESPE*PLEK 120 E R+ + ++ +++++ G++P LEK Sbjct: 649 EEREQRDLEQMPQRRRLSSTGGQTPRRDLEK 679
>IWS1_XENTR (Q505H7) IWS1-like protein| Length = 909 Score = 32.0 bits (71), Expect = 0.97 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Frame = -2 Query: 368 QAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIY----IPDQEVSKLTVTSNIKGLKR 201 Q S+ +E +K G + V + HP E + + I + +TSN KG+ R Sbjct: 732 QELPSVSQETLKHSGIGRAVMYLYKHPKESRPNKDIAGKLINEWSRPIFGLTSNYKGMTR 791 Query: 200 ERRDAKKNKEHSKKQKV----GESPE*PLEK 120 E R+ + ++ +++++ G++P LEK Sbjct: 792 EEREQRDLEQMPQRRRMSSSGGQTPRRDLEK 822
>OPTN_PIG (Q7YS99) Optineurin| Length = 574 Score = 30.8 bits (68), Expect = 2.2 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 26/139 (18%) Frame = -2 Query: 425 RMELVEVGPSMD--LVLRRHRQAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIYIPD 252 +++L GPS D + +R AD+ KE +PG + T EG R + + Sbjct: 165 QLKLNSGGPSEDSFVEIRMAEGEADAAMKEIKTSPGPIRTDSIDTSKSAEGTRNYLEFEE 224 Query: 251 QEVSKLTVTSNIKGLKRER-----RDAKKN------------------KEHSKKQKVGE- 144 VS+L + K ER ++AK+ +EH +++K E Sbjct: 225 LTVSQLLLCLREGNQKVERLEIALKEAKERILDFEKKAKDRSETETQTEEHKEQEKEEEK 284 Query: 143 SPE*PLEKASICNGQLTTL 87 SPE + + N Q+TTL Sbjct: 285 SPETVGSEVEMLNLQVTTL 303
>IWS1A_XENLA (Q6DE96) IWS1-like protein A| Length = 836 Score = 30.4 bits (67), Expect = 2.8 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Frame = -2 Query: 368 QAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIY----IPDQEVSKLTVTSNIKGLKR 201 Q S+ +E +K G + + + HP E + + I + +TSN KG+ R Sbjct: 659 QELPSVSQETLKHSGIGRAIMYLYKHPKESRPNKDIAGKLINEWSRPIFGLTSNYKGMTR 718 Query: 200 ERRDAKKNKEHSKKQKV----GESPE*PLEK 120 E R+ + ++ +++++ G++P L+K Sbjct: 719 EEREQRDIEQMPQRRRMSSSGGQTPRRDLDK 749
>SYV_STRAW (Q82CA3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 874 Score = 30.0 bits (66), Expect = 3.7 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Frame = -2 Query: 413 VEVGPSMDLVLRRHRQAADSLQKEAMKAPGHAKK-----VKNVTDHPIEGKRGRIYIPDQ 249 +++ ++D+V R R A D E KA AK + DH ++ RGR+ D+ Sbjct: 800 LDLSGTIDIVAERKRLAKDLAAAEKEKAQAGAKLGNEAFLAKAPDHVVDKIRGRLAKADE 859 Query: 248 EVSKL 234 +++++ Sbjct: 860 DIARI 864
>SEPA_STAEP (P0C0Q3) Extracellular elastase precursor (EC 3.4.24.-) (SEPP1)| Length = 507 Score = 28.9 bits (63), Expect = 8.2 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 11/103 (10%) Frame = -2 Query: 437 TSIPRMELVEVGPSMDLVLRRHRQAADSLQK-----------EAMKAPGHAKKVKNVTDH 291 T + + V ++D + + QA D+L++ + K K K T + Sbjct: 24 TEVDAKDKVSATQNIDAKVTQESQATDALKELPKSENIKKHYKDYKVTDTEKDNKGFTHY 83 Query: 290 PIEGKRGRIYIPDQEVSKLTVTSNIKGLKRERRDAKKNKEHSK 162 ++ K G Y PD+EV T L DAKK + +K Sbjct: 84 TLQPKVGNTYAPDKEVKVHTNKEGKVVLVNGDTDAKKVQPTNK 126
>KI21B_MOUSE (Q9QXL1) Kinesin family member 21B (Kinesin-like protein KIF6)| Length = 1668 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Frame = -2 Query: 380 RRHRQAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIYIPDQEVSKLTVTSNIKGLKR 201 +R R+ LQK HA+ +KN + + E K+ + + + + +K+ + ++ ++ Sbjct: 713 KRLREMNRDLQKLQAAQKEHARLLKNQSRYERELKKLQAEVAEMKKAKVALMKQMREEQQ 772 Query: 200 ERR--DAKKNKEHSKKQK 153 RR + K+N+E ++ +K Sbjct: 773 RRRLVETKRNREIAQLKK 790
>KI21B_HUMAN (O75037) Kinesin family member 21B| Length = 1637 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Frame = -2 Query: 380 RRHRQAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIYIPDQEVSKLTVTSNIKGLKR 201 +R R+ LQK HA+ +KN + + E K+ + + + + +K+ + ++ ++ Sbjct: 712 KRLREMNRDLQKLQAAQKEHARLLKNQSRYERELKKLQAEVAEMKKAKVALMKQMREEQQ 771 Query: 200 ERR--DAKKNKEHSKKQK 153 RR + K+N+E ++ +K Sbjct: 772 RRRLVETKRNREIAQLKK 789
>SCRB_STAXY (Q05936) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) (Sucrase)| (Invertase) Length = 494 Score = 28.9 bits (63), Expect = 8.2 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Frame = -2 Query: 434 SIPRMELVEVGPSMDLVLRRHRQAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIYIP 255 +IPR+ +E G + +R +A + L+ A G+A K HP EGK+ + I Sbjct: 322 TIPRVLTIESGN----LKQRPIKALEKLRTNEETALGYANKFTRQL-HPYEGKQFELIID 376 Query: 254 DQEVSKLTVTSNIKGLKRERRDAKKNKEHSK----KQKVGESPE*PLE 123 E V ++ K E NK K + + G+ PE P+E Sbjct: 377 ILENEATEVYFEVRTSKTESTLITYNKREQKLTLDRSESGQLPE-PVE 423 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,664,601 Number of Sequences: 219361 Number of extensions: 1392745 Number of successful extensions: 3498 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3418 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3489 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
