ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2b16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRCA_MOUSE (Q7TQ48) Sarcalumenin precursor 30 4.6
2NODI1_RHIME (O52618) Nod factor export ATP-binding protein I (No... 30 6.0

>SRCA_MOUSE (Q7TQ48) Sarcalumenin precursor|
          Length = 910

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 399 APGANGLRLHYHGAATLTVLDQAPHGAXASANSRYPAWRRHLSHEGXKPSS 551
           APG   L LHY        L+Q P GA ++AN +       LS+     S+
Sbjct: 60  APGDKNLLLHYPDGREAESLEQTPAGAPSTANGQGSETEASLSNTSAAESA 110



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>NODI1_RHIME (O52618) Nod factor export ATP-binding protein I (Nodulation|
           ATP-binding protein I)
          Length = 355

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 297 DWLAWSMAASPSLYTGXSPTLAVQLASIL**WGEAPGANGLRLHYHGAATLTVLDQAPHG 476
           +W   +  A  +   G  PT+A+ +AS+   +G+ P  NGL           +L   P+G
Sbjct: 35  EWKDQTGLAVKTAIPGAKPTVAIDVASVTKSYGDKPVINGLSFTVAAGECFGLL--GPNG 92

Query: 477 AXASANSR 500
           A  S  +R
Sbjct: 93  AGKSTITR 100


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,176,723
Number of Sequences: 219361
Number of extensions: 1114336
Number of successful extensions: 2889
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2884
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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