ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31o13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC125156.3| Mus musculus BAC clone RP24-386H5 from chromosome... 42 2.7
2gb|AC101833.14| Mus musculus chromosome 1, clone RP24-496H15, co... 42 2.7
3emb|CT025614.7| Mouse DNA sequence from clone RP23-418B18 on chr... 42 2.7

>gb|AC125156.3| Mus musculus BAC clone RP24-386H5 from chromosome 18, complete sequence
          Length = 189554

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 611    ctgcttcatttggtttctcct 631
              |||||||||||||||||||||
Sbjct: 163518 ctgcttcatttggtttctcct 163498



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>gb|AC101833.14| Mus musculus chromosome 1, clone RP24-496H15, complete sequence
          Length = 167684

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 727   ttctggtctttggagatgcta 747
             |||||||||||||||||||||
Sbjct: 58475 ttctggtctttggagatgcta 58495



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>emb|CT025614.7| Mouse DNA sequence from clone RP23-418B18 on chromosome 13, complete
             sequence
          Length = 183907

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 151   tgctaaactgagtagtgtaat 171
             |||||||||||||||||||||
Sbjct: 73552 tgctaaactgagtagtgtaat 73532


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,984,012
Number of Sequences: 3902068
Number of extensions: 7984012
Number of successful extensions: 163734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 163730
Number of HSP's gapped (non-prelim): 4
length of query: 787
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 764
effective length of database: 17,143,297,704
effective search space: 13097479445856
effective search space used: 13097479445856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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