ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31o06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009259.1| Triticum aestivum clone wlk4.pk0015.a10:fis, full insert mRNA sequence Length = 788 Score = 396 bits (200), Expect = e-107 Identities = 217/223 (97%) Strand = Plus / Minus Query: 94 acctcagacgccgggcgggagggggatggaggcgacggtcttggcccaggcggggcgggc 153 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 707 acctcagacggcgggcgggagggggatggaggcgacggtcttggcccaggcggggcgggc 648 Query: 154 ggagatctcgtcccaccaagccttgacgtgggggcgggaggccaccaggtccgccttggg 213 ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 647 ggagatctcctcccaccaggccttgacgtgcgggcgggaggccaccaggtccgccttggg 588 Query: 214 gctcttggtgagcatgaagaggtaggacatgtggttggcgtcggcgagcgtgaaggcgtc 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 587 gctcttggtgagcatgaagaggtaggacatgtggttggcgtcggcgagcgtgaaggcgtc 528 Query: 274 gccggcgaggtacttgttcccggcggcgaggtgggcctngtag 316 |||||| ||||||||||||||||||||||||||||||| |||| Sbjct: 527 gccggccaggtacttgttcccggcggcgaggtgggcctcgtag 485
>emb|AJ440794.1|TAE440794 Triticum aestivum mRNA for glutathione transferase F5 (gstf5 gene) Length = 866 Score = 389 bits (196), Expect = e-105 Identities = 216/223 (96%) Strand = Plus / Minus Query: 94 acctcagacgccgggcgggagggggatggaggcgacggtcttggcccaggcggggcgggc 153 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 689 acctcagacggcgggcgggagggggatggaggcgacggtcttggcccaggcggggcgggc 630 Query: 154 ggagatctcgtcccaccaagccttgacgtgggggcgggaggccaccaggtccgccttggg 213 ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 629 ggagatctcctcccaccaggccttgacgtgcgggcgggaggccaccaggtccgccttggg 570 Query: 214 gctcttggtgagcatgaagaggtaggacatgtggttggcgtcggcgagcgtgaaggcgtc 273 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 569 gctcttggtgagcatgaagaggtaggacatgtggttggcgtcggcgagcgggaaggcgtc 510 Query: 274 gccggcgaggtacttgttcccggcggcgaggtgggcctngtag 316 |||||| ||||||||||||||||||||||||||||||| |||| Sbjct: 509 gccggccaggtacttgttcccggcggcgaggtgggcctcgtag 467
>gb|BT009137.1| Triticum aestivum clone wl1n.pk0040.b1:fis, full insert mRNA sequence Length = 920 Score = 113 bits (57), Expect = 3e-22 Identities = 126/149 (84%) Strand = Plus / Minus Query: 143 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggggcgggaggccaccagg 202 ||||||||||||| ||| | |||||||| ||||||||||||||||||| ||| || || Sbjct: 669 gcggggcgggcggcgatggcctcccaccaggccttgacgtgggggcgggcggcgacgagc 610 Query: 203 tccgccttggggctcttggtgagcatgaagaggtaggacatgtggttggcgtcggcgagc 262 | ||||||||| ||||| |||| || ||||||||| ||||||||||||||||||| Sbjct: 609 ccggccttgggggtcttgctgaggtagagcaggtaggacgcgtggttggcgtcggcgagc 550 Query: 263 gtgaaggcgtcgccggcgaggtacttgtt 291 ||||| |||| ||||||||||||||||| Sbjct: 549 gtgaactcgtccccggcgaggtacttgtt 521
>emb|AJ010296.1|ZMA010296 Zea mays mRNA for glutathione transferase III(b) Length = 944 Score = 113 bits (57), Expect = 3e-22 Identities = 126/149 (84%) Strand = Plus / Minus Query: 143 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggggcgggaggccaccagg 202 ||||||||||||| ||| | |||||||| ||||||||||||||||||| ||| || || Sbjct: 673 gcggggcgggcggcgatggcctcccaccaggccttgacgtgggggcgggcggcgacgagc 614 Query: 203 tccgccttggggctcttggtgagcatgaagaggtaggacatgtggttggcgtcggcgagc 262 | ||||||||| ||||| |||| || ||||||||| ||||||||||||||||||| Sbjct: 613 ccggccttgggggtcttgctgaggtagagcaggtaggacgcgtggttggcgtcggcgagc 554 Query: 263 gtgaaggcgtcgccggcgaggtacttgtt 291 ||||| |||| ||||||||||||||||| Sbjct: 553 gtgaactcgtccccggcgaggtacttgtt 525
>gb|AY105647.1| Zea mays PCO132886 mRNA sequence Length = 1003 Score = 113 bits (57), Expect = 3e-22 Identities = 126/149 (84%) Strand = Plus / Minus Query: 143 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggggcgggaggccaccagg 202 ||||||||||||| ||| | |||||||| ||||||||||||||||||| ||| || || Sbjct: 752 gcggggcgggcggcgatggcctcccaccaggccttgacgtgggggcgggcggcgacgagc 693 Query: 203 tccgccttggggctcttggtgagcatgaagaggtaggacatgtggttggcgtcggcgagc 262 | ||||||||| ||||| |||| || ||||||||| ||||||||||||||||||| Sbjct: 692 ccggccttgggggtcttgctgaggtagagcaggtaggacgcgtggttggcgtcggcgagc 633 Query: 263 gtgaaggcgtcgccggcgaggtacttgtt 291 ||||| |||| ||||||||||||||||| Sbjct: 632 gtgaactcgtccccggcgaggtacttgtt 604
>emb|AJ010295.1|ZMA010295 Zea mays mRNA for glutathione transferase III(a) Length = 906 Score = 105 bits (53), Expect = 8e-20 Identities = 125/149 (83%) Strand = Plus / Minus Query: 143 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggggcgggaggccaccagg 202 |||||||||||| ||| | |||||||| ||||||||||||||||||| ||| || || Sbjct: 684 gcggggcgggcgacgatggcctcccaccaggccttgacgtgggggcgggcggcgacgagc 625 Query: 203 tccgccttggggctcttggtgagcatgaagaggtaggacatgtggttggcgtcggcgagc 262 | ||||||||| ||||| |||| || ||||||||| ||||||||||||||||||| Sbjct: 624 ccggccttgggggtcttgctgaggtagagcaggtaggacgcgtggttggcgtcggcgagc 565 Query: 263 gtgaaggcgtcgccggcgaggtacttgtt 291 ||||| |||| ||||||||||||||||| Sbjct: 564 gtgaactcgtccccggcgaggtacttgtt 536
>ref|NM_190039.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 666 Score = 93.7 bits (47), Expect = 3e-16 Identities = 146/179 (81%) Strand = Plus / Minus Query: 107 ggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagatctcgtcc 166 ||||||| |||||||| |||| ||||||| ||| || ||||| | |||||| |||||| Sbjct: 656 ggcgggaaggggatggcggcggcggtcttcttccacgccgggcgcgaggagatgtcgtcc 597 Query: 167 caccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctcttggtgagc 226 ||||| ||||||||||| || | ||| || || || |||||| |||| |||||| ||| Sbjct: 596 caccacgccttgacgtgcggcctggacgcgacgagctccgccatgggcgtcttggagagg 537 Query: 227 atgaagaggtaggacatgtggttggcgtcggcgagcgtgaaggcgtcgccggcgaggta 285 | | ||||||||||||||||||||||||||||||| ||| || |||||||||||| Sbjct: 536 aacagcaggtaggacatgtggttggcgtcggcgagcgagaatcggttgccggcgaggta 478
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 93.7 bits (47), Expect = 3e-16 Identities = 146/179 (81%) Strand = Plus / Plus Query: 107 ggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagatctcgtcc 166 ||||||| |||||||| |||| ||||||| ||| || ||||| | |||||| |||||| Sbjct: 40955232 ggcgggaaggggatggcggcggcggtcttcttccacgccgggcgcgaggagatgtcgtcc 40955291 Query: 167 caccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctcttggtgagc 226 ||||| ||||||||||| || | ||| || || || |||||| |||| |||||| ||| Sbjct: 40955292 caccacgccttgacgtgcggcctggacgcgacgagctccgccatgggcgtcttggagagg 40955351 Query: 227 atgaagaggtaggacatgtggttggcgtcggcgagcgtgaaggcgtcgccggcgaggta 285 | | ||||||||||||||||||||||||||||||| ||| || |||||||||||| Sbjct: 40955352 aacagcaggtaggacatgtggttggcgtcggcgagcgagaatcggttgccggcgaggta 40955410 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 agcgtgaaggcgtcgccggc 279 |||||||||||||||||||| Sbjct: 15780032 agcgtgaaggcgtcgccggc 15780013
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 93.7 bits (47), Expect = 3e-16 Identities = 146/179 (81%) Strand = Plus / Plus Query: 107 ggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagatctcgtcc 166 ||||||| |||||||| |||| ||||||| ||| || ||||| | |||||| |||||| Sbjct: 83657 ggcgggaaggggatggcggcggcggtcttcttccacgccgggcgcgaggagatgtcgtcc 83716 Query: 167 caccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctcttggtgagc 226 ||||| ||||||||||| || | ||| || || || |||||| |||| |||||| ||| Sbjct: 83717 caccacgccttgacgtgcggcctggacgcgacgagctccgccatgggcgtcttggagagg 83776 Query: 227 atgaagaggtaggacatgtggttggcgtcggcgagcgtgaaggcgtcgccggcgaggta 285 | | ||||||||||||||||||||||||||||||| ||| || |||||||||||| Sbjct: 83777 aacagcaggtaggacatgtggttggcgtcggcgagcgagaatcggttgccggcgaggta 83835
>dbj|AK103927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D04, full insert sequence Length = 871 Score = 93.7 bits (47), Expect = 3e-16 Identities = 146/179 (81%) Strand = Plus / Minus Query: 107 ggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagatctcgtcc 166 ||||||| |||||||| |||| ||||||| ||| || ||||| | |||||| |||||| Sbjct: 737 ggcgggaaggggatggcggcggcggtcttcttccacgccgggcgcgaggagatgtcgtcc 678 Query: 167 caccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctcttggtgagc 226 ||||| ||||||||||| || | ||| || || || |||||| |||| |||||| ||| Sbjct: 677 caccacgccttgacgtgcggcctggacgcgacgagctccgccatgggcgtcttggagagg 618 Query: 227 atgaagaggtaggacatgtggttggcgtcggcgagcgtgaaggcgtcgccggcgaggta 285 | | ||||||||||||||||||||||||||||||| ||| || |||||||||||| Sbjct: 617 aacagcaggtaggacatgtggttggcgtcggcgagcgagaatcggttgccggcgaggta 559
>dbj|AK059985.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-G06, full insert sequence Length = 963 Score = 93.7 bits (47), Expect = 3e-16 Identities = 146/179 (81%) Strand = Plus / Minus Query: 107 ggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagatctcgtcc 166 ||||||| |||||||| |||| ||||||| ||| || ||||| | |||||| |||||| Sbjct: 812 ggcgggaaggggatggcggcggcggtcttcttccacgccgggcgcgaggagatgtcgtcc 753 Query: 167 caccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctcttggtgagc 226 ||||| ||||||||||| || | ||| || || || |||||| |||| |||||| ||| Sbjct: 752 caccacgccttgacgtgcggcctggacgcgacgagctccgccatgggcgtcttggagagg 693 Query: 227 atgaagaggtaggacatgtggttggcgtcggcgagcgtgaaggcgtcgccggcgaggta 285 | | ||||||||||||||||||||||||||||||| ||| || |||||||||||| Sbjct: 692 aacagcaggtaggacatgtggttggcgtcggcgagcgagaatcggttgccggcgaggta 634
>gb|AF309383.1| Oryza sativa (japonica cultivar-group) clone S10202_1A putative glutathione S-transferase OsGSTF4 mRNA, complete cds Length = 1032 Score = 85.7 bits (43), Expect = 8e-14 Identities = 145/179 (81%) Strand = Plus / Minus Query: 107 ggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagatctcgtcc 166 ||||||| |||||||| |||| ||||||| ||| || ||||| | |||||| |||||| Sbjct: 736 ggcgggaaggggatggcggcggcggtcttcttccacgccgggcgcgaggagatgtcgtcc 677 Query: 167 caccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctcttggtgagc 226 ||||| ||||||||||| || | | | || || || |||||| |||| |||||| ||| Sbjct: 676 caccacgccttgacgtgcggcctgaacgcgacgagctccgccatgggcgtcttggagagg 617 Query: 227 atgaagaggtaggacatgtggttggcgtcggcgagcgtgaaggcgtcgccggcgaggta 285 | | ||||||||||||||||||||||||||||||| ||| || |||||||||||| Sbjct: 616 aacagcaggtaggacatgtggttggcgtcggcgagcgagaatcggttgccggcgaggta 558
>emb|X06755.1|ZMGST3 Maize mRNA for GSH gluthathione S-transferase III (GST;EC 2.5.1.18) Length = 913 Score = 81.8 bits (41), Expect = 1e-12 Identities = 130/153 (84%), Gaps = 5/153 (3%) Strand = Plus / Minus Query: 143 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggggcgggaggccac-cag 201 ||||||||||||| ||| | |||||||| ||||||||||||||||||| ||| || ||| Sbjct: 685 gcggggcgggcggcgatggcctcccaccaggccttgacgtgggggcgggcggcgacgcag 626 Query: 202 gtccgccttggggctcttggtgagcatga-ag-aggtagga-catgtggttggcgtcggc 258 | ||||||||| ||||| |||| ||| || |||||||| | ||||||||||||||| Sbjct: 625 cccggccttgggggtcttgctgagg-tgagagcaggtaggagcgcgtggttggcgtcggc 567 Query: 259 gagcgtgaaggcgtcgccggcgaggtacttgtt 291 ||||||||| |||| ||||||||||||||||| Sbjct: 566 gagcgtgaactcgtccccggcgaggtacttgtt 534
>emb|X04455.1|ZMGGST3B Maize mRNA for glutathione-S-transferase GSTIII (clone GSTIIIB) Length = 859 Score = 71.9 bits (36), Expect = 1e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 244 gtggttggcgtcggcgagcgtgaaggcgtcgccggcgaggtacttgtt 291 |||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct: 533 gtggttggcgtcggcgagcgtgaactcgtccccggcgaggtacttgtt 486 Score = 40.1 bits (20), Expect = 4.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 143 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggg 186 |||||||||||| ||| | |||||||| |||||||||||||| Sbjct: 632 gcggggcgggcgacgatggcctcccaccaggccttgacgtgggg 589
>emb|X04375.1|ZMGST3A Maize mRNA for glutathione-S-transferase GSTIII (clone GSTIIIA) Length = 840 Score = 71.9 bits (36), Expect = 1e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 244 gtggttggcgtcggcgagcgtgaaggcgtcgccggcgaggtacttgtt 291 |||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct: 514 gtggttggcgtcggcgagcgtgaactcgtccccggcgaggtacttgtt 467 Score = 40.1 bits (20), Expect = 4.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 143 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggg 186 |||||||||||| ||| | |||||||| |||||||||||||| Sbjct: 613 gcggggcgggcgacgatggcctcccaccaggccttgacgtgggg 570
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Plus Query: 255 cggcgagcgtgaaggcgtcgccggc 279 ||||||||||||||||||||||||| Sbjct: 28948955 cggcgagcgtgaaggcgtcgccggc 28948979
>dbj|AP004052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1218_D07 Length = 114511 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Plus Query: 255 cggcgagcgtgaaggcgtcgccggc 279 ||||||||||||||||||||||||| Sbjct: 32013 cggcgagcgtgaaggcgtcgccggc 32037
>dbj|AK100068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163B17, full insert sequence Length = 3301 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Minus Query: 255 cggcgagcgtgaaggcgtcgccggc 279 ||||||||||||||||||||||||| Sbjct: 1545 cggcgagcgtgaaggcgtcgccggc 1521
>ref|XM_470191.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 678 Score = 48.1 bits (24), Expect = 0.017 Identities = 36/40 (90%) Strand = Plus / Minus Query: 253 gtcggcgagcgtgaaggcgtcgccggcgaggtacttgttc 292 |||||| || ||||| ||||||||||||||||||||||| Sbjct: 507 gtcggccagggtgaactcgtcgccggcgaggtacttgttc 468
>gb|AY533123.1| Oryza sativa (japonica cultivar-group) glutathione S-transferase GSTF15 mRNA, complete cds Length = 678 Score = 48.1 bits (24), Expect = 0.017 Identities = 36/40 (90%) Strand = Plus / Minus Query: 253 gtcggcgagcgtgaaggcgtcgccggcgaggtacttgttc 292 |||||| || ||||| ||||||||||||||||||||||| Sbjct: 507 gtcggccagggtgaactcgtcgccggcgaggtacttgttc 468
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.017 Identities = 36/40 (90%) Strand = Plus / Plus Query: 253 gtcggcgagcgtgaaggcgtcgccggcgaggtacttgttc 292 |||||| || ||||| ||||||||||||||||||||||| Sbjct: 1929173 gtcggccagggtgaactcgtcgccggcgaggtacttgttc 1929212
>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06, complete sequence Length = 122218 Score = 48.1 bits (24), Expect = 0.017 Identities = 36/40 (90%) Strand = Plus / Minus Query: 253 gtcggcgagcgtgaaggcgtcgccggcgaggtacttgttc 292 |||||| || ||||| ||||||||||||||||||||||| Sbjct: 46238 gtcggccagggtgaactcgtcgccggcgaggtacttgttc 46199
>gb|AF244677.1|AF244677 Zea mays glutathione S-transferase GST 12 mRNA, complete cds Length = 1198 Score = 48.1 bits (24), Expect = 0.017 Identities = 36/40 (90%) Strand = Plus / Minus Query: 253 gtcggcgagcgtgaaggcgtcgccggcgaggtacttgttc 292 |||||| || |||||| |||||||||||||||||| |||| Sbjct: 613 gtcggccagtgtgaagtcgtcgccggcgaggtactcgttc 574
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.017 Identities = 36/40 (90%) Strand = Plus / Plus Query: 253 gtcggcgagcgtgaaggcgtcgccggcgaggtacttgttc 292 |||||| || ||||| ||||||||||||||||||||||| Sbjct: 1929171 gtcggccagggtgaactcgtcgccggcgaggtacttgttc 1929210
>gb|AF244678.1|AF244678 Zea mays glutathione S-transferase GST 13 mRNA, complete cds Length = 1134 Score = 48.1 bits (24), Expect = 0.017 Identities = 36/40 (90%) Strand = Plus / Minus Query: 253 gtcggcgagcgtgaaggcgtcgccggcgaggtacttgttc 292 |||||| || |||||| |||||||||||||||||| |||| Sbjct: 570 gtcggccagggtgaagtcgtcgccggcgaggtactcgttc 531
>dbj|AK059955.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-D02, full insert sequence Length = 951 Score = 48.1 bits (24), Expect = 0.017 Identities = 36/40 (90%) Strand = Plus / Minus Query: 253 gtcggcgagcgtgaaggcgtcgccggcgaggtacttgttc 292 |||||| || ||||| ||||||||||||||||||||||| Sbjct: 615 gtcggccagggtgaactcgtcgccggcgaggtacttgttc 576
>gb|AY103863.1| Zea mays PCO132785 mRNA sequence Length = 959 Score = 48.1 bits (24), Expect = 0.017 Identities = 36/40 (90%) Strand = Plus / Minus Query: 253 gtcggcgagcgtgaaggcgtcgccggcgaggtacttgttc 292 |||||| || |||||| |||||||||||||||||| |||| Sbjct: 636 gtcggccagtgtgaagtcgtcgccggcgaggtactcgttc 597
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 258 cgagcgtgaaggcgtcgccggc 279 |||||||||||||||||||||| Sbjct: 535638 cgagcgtgaaggcgtcgccggc 535617
>dbj|AP005634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0584D02 Length = 147234 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 258 cgagcgtgaaggcgtcgccggc 279 |||||||||||||||||||||| Sbjct: 114409 cgagcgtgaaggcgtcgccggc 114388
>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 Length = 223670 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 250 ggcgtcggcgagcgtgaaggcgtcg 274 |||||||||||||||| |||||||| Sbjct: 79705 ggcgtcggcgagcgtgtaggcgtcg 79729 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 250 ggcgtcggcgagcgtgaaggcgtcg 274 |||||||||||||||| |||||||| Sbjct: 69578 ggcgtcggcgagcgtgtaggcgtcg 69602
>gb|U59552.1|HGU59552 Hepatitis GB virus C, isolate 36, 5'-untranslated region Length = 590 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 gccgggcgggagggggatgga 123 ||||||||||||||||||||| Sbjct: 351 gccgggcgggagggggatgga 371
>gb|U59551.1|HGU59551 Hepatitis GB virus C, isolate 35, 5'-untranslated region Length = 591 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 gccgggcgggagggggatgga 123 ||||||||||||||||||||| Sbjct: 351 gccgggcgggagggggatgga 371
>gb|U59550.1|HGU59550 Hepatitis GB virus C, isolate 34, 5'-untranslated region Length = 590 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 gccgggcgggagggggatgga 123 ||||||||||||||||||||| Sbjct: 351 gccgggcgggagggggatgga 371
>gb|U59549.1|HGU59549 Hepatitis GB virus C, isolate 33, 5'-untranslated region Length = 591 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 gccgggcgggagggggatgga 123 ||||||||||||||||||||| Sbjct: 351 gccgggcgggagggggatgga 371
>gb|U59548.1|HGU59548 Hepatitis GB virus C, isolate 32, 5'-untranslated region Length = 591 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 gccgggcgggagggggatgga 123 ||||||||||||||||||||| Sbjct: 351 gccgggcgggagggggatgga 371
>ref|NM_193898.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2760 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 agcgtgaaggcgtcgccggc 279 |||||||||||||||||||| Sbjct: 311 agcgtgaaggcgtcgccggc 292
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gacgccgggcgggaggggga 119 |||||||||||||||||||| Sbjct: 674243 gacgccgggcgggaggggga 674262
>gb|AC101738.16| Mus musculus chromosome 1, clone RP23-472N5, complete sequence Length = 183026 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 ctcttggtgagcatgaagag 234 |||||||||||||||||||| Sbjct: 32888 ctcttggtgagcatgaagag 32907
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 cggggcgggcggagatctcg 163 |||||||||||||||||||| Sbjct: 1453948 cggggcgggcggagatctcg 1453967
>ref|XM_957202.1| Neurospora crassa OR74A hypothetical protein (NCU07709.1) partial mRNA Length = 687 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 ggatggaggcgacggtcttg 136 |||||||||||||||||||| Sbjct: 477 ggatggaggcgacggtcttg 496
>ref|XM_328414.1| Neurospora crassa OR74A hypothetical protein (NCU07709.1) partial mRNA Length = 687 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 ggatggaggcgacggtcttg 136 |||||||||||||||||||| Sbjct: 477 ggatggaggcgacggtcttg 496
>ref|XM_780527.1| PREDICTED: Strongylocentrotus purpuratus similar to Rab40b, member RAS oncogene family (LOC580472), mRNA Length = 678 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 catgtggttggcgtcggcga 260 |||||||||||||||||||| Sbjct: 570 catgtggttggcgtcggcga 551
>gb|BT009600.1| Triticum aestivum clone wre1n.pk0078.d7:fis, full insert mRNA sequence Length = 583 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tcccaccaagccttgacgtg 183 |||||||||||||||||||| Sbjct: 358 tcccaccaagccttgacgtg 339
>ref|XM_779903.1| PREDICTED: Strongylocentrotus purpuratus similar to Rab40b, member RAS oncogene family (LOC579808), mRNA Length = 474 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 catgtggttggcgtcggcga 260 |||||||||||||||||||| Sbjct: 366 catgtggttggcgtcggcga 347
>emb|Z46970.1|LMSAP2GN L.mexicana lmsap2 gene for secreted acid phosphatase 2 (SAP2) Length = 3015 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gcgaggtacttgttcccggc 297 |||||||||||||||||||| Sbjct: 1167 gcgaggtacttgttcccggc 1148
>emb|Z46969.1|LMSAP1GN L.mexicana lmsap1 gene for secreted acid phosphatase 1 (SAP1) Length = 1974 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gcgaggtacttgttcccggc 297 |||||||||||||||||||| Sbjct: 1179 gcgaggtacttgttcccggc 1160
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 gaaggcgtcgccggcgaggt 284 |||||||||||||||||||| Sbjct: 14474902 gaaggcgtcgccggcgaggt 14474921
>gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0075H14, complete sequence Length = 155420 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 gaaggcgtcgccggcgaggt 284 |||||||||||||||||||| Sbjct: 89265 gaaggcgtcgccggcgaggt 89284
>dbj|AP003536.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1096D03 Length = 184422 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 agcgtgaaggcgtcgccggc 279 |||||||||||||||||||| Sbjct: 7701 agcgtgaaggcgtcgccggc 7682
>dbj|AP004359.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1150E06 Length = 129680 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 agcgtgaaggcgtcgccggc 279 |||||||||||||||||||| Sbjct: 87121 agcgtgaaggcgtcgccggc 87102
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 gaaggcgtcgccggcgaggt 284 |||||||||||||||||||| Sbjct: 14483144 gaaggcgtcgccggcgaggt 14483163
>dbj|AB015870.1| Vitis vinifera gene for phenylalanine ammonia-lyase, partial cds Length = 1938 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 cgccgggcgggagggggatg 121 |||||||||||||||||||| Sbjct: 471 cgccgggcgggagggggatg 490 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,663,296 Number of Sequences: 3902068 Number of extensions: 2663296 Number of successful extensions: 54553 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54103 Number of HSP's gapped (non-prelim): 441 length of query: 316 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 294 effective length of database: 17,147,199,772 effective search space: 5041276732968 effective search space used: 5041276732968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
