| Clone Name | rbags32d05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U73214.1|TAU73214 Triticum aestivum cold acclimation protein WCOR518 (Wcor518) mRNA, parial cds Length = 1168 Score = 351 bits (177), Expect = 2e-93 Identities = 293/332 (88%) Strand = Plus / Minus Query: 251 tggagcttaactagggcacttgaagtcgtcgggcactgtcttgccacattggttgacgag 310 |||||||||||||||||||| |||||| | |||||| |||||||| || |||||||| || Sbjct: 955 tggagcttaactagggcactggaagtccttgggcaccgtcttgccgcactggttgaccag 896 Query: 311 cacctcgatggcaatgggcagcacgaggttgatgttgagcgccttgagcttgatggtggt 370 || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 895 cagatcgatggcgatgggcagcacgaggttgatgttgagcgccttgagcttgatggtggt 836 Query: 371 gcagaggcagagcgctgcgtcgaggtcagccacgccggataacagcgggcaacatttgtc 430 ||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| Sbjct: 835 gcagaggcagagcgcggcgtcgaggtcagccacgccggataacagcgggcagcagctgtc 776 Query: 431 gctggcattgctgccgattagcgcgtgcagcagcccgtcgagcgcgtccacgcaccccaa 490 ||| || |||||||||| | |||||||| |||||||| |||| |||||||||||||||| Sbjct: 775 gctagcgctgctgccgatcaccgcgtgcaccagcccgttgagcccgtccacgcaccccaa 716 Query: 491 cagtttcagggtgtcatgngggcacttgcctgttgacgatgatggcggcggcgtcgctgg 550 ||||||||| || || ||||||| ||| || |||| |||||||| || |||||||| Sbjct: 715 cagtttcagcgtatcgatggggcactggcccgtcgacggcgatggcggtggtgtcgctgg 656 Query: 551 gactggggccggcgccacaggagacggcggcg 582 |||||||| ||| ||||||| |||||||||| Sbjct: 655 gactggggacgggaccacaggggacggcggcg 624 Score = 226 bits (114), Expect = 1e-55 Identities = 239/281 (85%) Strand = Plus / Minus Query: 263 agggcacttgaagtcgtcgggcactgtcttgccacattggttgacgagcacctcgatggc 322 |||||||| ||||||| |||||| |||||||| ||||||||||||||||||| |||||| Sbjct: 502 agggcactggaagtcgctgggcaccgtcttgccgcattggttgacgagcacctggatggc 443 Query: 323 aatgggcagcacgaggttgatgttgagcgccttgagcttgatggtggtgcagaggcagag 382 || ||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||| Sbjct: 442 gattggcagcacgaggttgatgttgagtgccttgagctcgattgtggtgcataggcagag 383 Query: 383 cgctgcgtcgaggtcagccacgccggataacagcgggcaacatttgtcgctggcattgct 442 ||||||||||||| | | ||||||||| |||| ||||| || || |||||||| |||| Sbjct: 382 cgctgcgtcgaggccggtcacgccggacaacaaagggcagcacttatcgctggcgctgct 323 Query: 443 gccgattagcgcgtgcagcagcccgtcgagcgcgtccacgcaccccaacagtttcagggt 502 |||||| | |||||||| ||||||| ||| || ||||||||||||| ||| ||||| || Sbjct: 322 gccgatcaccgcgtgcacaagcccgttgagggcatccacgcaccccagcagcttcagtgt 263 Query: 503 gtcatgngggcacttgcctgttgacgatgatggcggcggcg 543 ||| ||||||||||||| | ||| ||||| ||||||| Sbjct: 262 gtccaccgggcacttgcctggaggcgaagatggtggcggcg 222 Score = 97.6 bits (49), Expect = 6e-17 Identities = 78/87 (89%), Gaps = 1/87 (1%) Strand = Plus / Minus Query: 715 ggaagtcgctcggcactgtcttgccg-attggttgacnagcacttggatggcaattggaa 773 |||||||||| ||||| ||||||||| |||||||||| ||||| |||||||| ||||| | Sbjct: 494 ggaagtcgctgggcaccgtcttgccgcattggttgacgagcacctggatggcgattggca 435 Query: 774 ncacgaggttgatgttgagcgccttga 800 |||||||||||||||||| ||||||| Sbjct: 434 gcacgaggttgatgttgagtgccttga 408 Score = 65.9 bits (33), Expect = 2e-07 Identities = 64/74 (86%), Gaps = 4/74 (5%) Strand = Plus / Minus Query: 68 tacacggttactatttgatagacaattacactaacaaaatgcatgcatgttccacagctc 127 |||||||||| ||||||||| ||| |||||| ||||| || |||||||| ||||||| Sbjct: 1152 tacacggttattatttgatacacagttacac----aaaatccaagcatgttctacagctc 1097 Query: 128 cacatcacaagtag 141 |||||||||||||| Sbjct: 1096 cacatcacaagtag 1083 Score = 63.9 bits (32), Expect = 8e-07 Identities = 81/98 (82%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 726 ggcactgtcttgccg-attggttgacnagcacttggatggcaattggaancacgaggttg 784 ||||| ||||||||| | |||||||| |||| | |||||| || || | |||||||||| Sbjct: 924 ggcaccgtcttgccgcactggttgaccagcagatcgatggcgatgggcagcacgaggttg 865 Query: 785 atgttgagcgccttgaactnnatggnggtncaaaggca 822 |||||||||||||||| || |||| ||| || ||||| Sbjct: 864 atgttgagcgccttgagcttgatggtggtgcagaggca 827
>ref|XM_473863.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 465 Score = 133 bits (67), Expect = 1e-27 Identities = 169/203 (83%) Strand = Plus / Minus Query: 302 gttgacgagcacctcgatggcaatgggcagcacgaggttgatgttgagcgccttgagctt 361 |||||||||||| |||||||| ||| || |||||| ||| | |||||||||| ||| Sbjct: 420 gttgacgagcacggagatggcaacggggaggacgaggctgacgccgagcgccttggcctt 361 Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgccggataacagcgggca 421 ||||| |||||||||||||||||| ||||||||||| || |||||||| | ||||||||| Sbjct: 360 gatggcggtgcagaggcagagcgcggcgtcgaggtcggcgacgccggacagcagcgggca 301 Query: 422 acatttgtcgctggcattgctgccgattagcgcgtgcagcagcccgtcgagcgcgtccac 481 || |||||||||| ||| ||||| | |||||||| |||||||| ||||||||||| Sbjct: 300 gcaggtgtcgctggccttggcgccgaccaccgcgtgcaccagcccgttcagcgcgtccac 241 Query: 482 gcaccccaacagtttcagggtgt 504 |||| ||| ||| ||||| |||| Sbjct: 240 gcacgccagcagcttcagcgtgt 218
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 133 bits (67), Expect = 1e-27 Identities = 169/203 (83%) Strand = Plus / Minus Query: 302 gttgacgagcacctcgatggcaatgggcagcacgaggttgatgttgagcgccttgagctt 361 |||||||||||| |||||||| ||| || |||||| ||| | |||||||||| ||| Sbjct: 78151 gttgacgagcacggagatggcaacggggaggacgaggctgacgccgagcgccttggcctt 78092 Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgccggataacagcgggca 421 ||||| |||||||||||||||||| ||||||||||| || |||||||| | ||||||||| Sbjct: 78091 gatggcggtgcagaggcagagcgcggcgtcgaggtcggcgacgccggacagcagcgggca 78032 Query: 422 acatttgtcgctggcattgctgccgattagcgcgtgcagcagcccgtcgagcgcgtccac 481 || |||||||||| ||| ||||| | |||||||| |||||||| ||||||||||| Sbjct: 78031 gcaggtgtcgctggccttggcgccgaccaccgcgtgcaccagcccgttcagcgcgtccac 77972 Query: 482 gcaccccaacagtttcagggtgt 504 |||| ||| ||| ||||| |||| Sbjct: 77971 gcacgccagcagcttcagcgtgt 77949 Score = 109 bits (55), Expect = 2e-20 Identities = 133/159 (83%) Strand = Plus / Minus Query: 347 gagcgccttgagcttgatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgcc 406 |||||||||| |||||||| |||||||||||||||||| ||||||||||| || ||||| Sbjct: 67687 gagcgccttggccttgatggcggtgcagaggcagagcgcggcgtcgaggtcggcgacgcc 67628 Query: 407 ggataacagcgggcaacatttgtcgctggcattgctgccgattagcgcgtgcagcagccc 466 ||| | ||||||||| || |||||| ||| || ||||| | |||||||| |||||| Sbjct: 67627 ggacagcagcgggcagcaggtgtcgccggcggtggcgccgaccaccgcgtgcaccagccc 67568 Query: 467 gtcgagcgcgtccacgcaccccaacagtttcagggtgtc 505 || ||||||||||||||| ||| ||| ||||| ||||| Sbjct: 67567 gttcagcgcgtccacgcacgccagcagcttcagcgtgtc 67529
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 133 bits (67), Expect = 1e-27 Identities = 169/203 (83%) Strand = Plus / Minus Query: 302 gttgacgagcacctcgatggcaatgggcagcacgaggttgatgttgagcgccttgagctt 361 |||||||||||| |||||||| ||| || |||||| ||| | |||||||||| ||| Sbjct: 31096070 gttgacgagcacggagatggcaacggggaggacgaggctgacgccgagcgccttggcctt 31096011 Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgccggataacagcgggca 421 ||||| |||||||||||||||||| ||||||||||| || |||||||| | ||||||||| Sbjct: 31096010 gatggcggtgcagaggcagagcgcggcgtcgaggtcggcgacgccggacagcagcgggca 31095951 Query: 422 acatttgtcgctggcattgctgccgattagcgcgtgcagcagcccgtcgagcgcgtccac 481 || |||||||||| ||| ||||| | |||||||| |||||||| ||||||||||| Sbjct: 31095950 gcaggtgtcgctggccttggcgccgaccaccgcgtgcaccagcccgttcagcgcgtccac 31095891 Query: 482 gcaccccaacagtttcagggtgt 504 |||| ||| ||| ||||| |||| Sbjct: 31095890 gcacgccagcagcttcagcgtgt 31095868 Score = 109 bits (55), Expect = 2e-20 Identities = 133/159 (83%) Strand = Plus / Minus Query: 347 gagcgccttgagcttgatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgcc 406 |||||||||| |||||||| |||||||||||||||||| ||||||||||| || ||||| Sbjct: 31085606 gagcgccttggccttgatggcggtgcagaggcagagcgcggcgtcgaggtcggcgacgcc 31085547 Query: 407 ggataacagcgggcaacatttgtcgctggcattgctgccgattagcgcgtgcagcagccc 466 ||| | ||||||||| || |||||| ||| || ||||| | |||||||| |||||| Sbjct: 31085546 ggacagcagcgggcagcaggtgtcgccggcggtggcgccgaccaccgcgtgcaccagccc 31085487 Query: 467 gtcgagcgcgtccacgcaccccaacagtttcagggtgtc 505 || ||||||||||||||| ||| ||| ||||| ||||| Sbjct: 31085486 gttcagcgcgtccacgcacgccagcagcttcagcgtgtc 31085448 Score = 42.1 bits (21), Expect = 3.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 340 tgatgttgagcgccttgagcttgatggtggtgcagaggcag 380 |||||| |||| ||||| |||||||| ||||||||||||| Sbjct: 32827213 tgatgtcgagcaccttggccttgatggcggtgcagaggcag 32827253
>dbj|AK062295.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F05, full insert sequence Length = 570 Score = 113 bits (57), Expect = 1e-21 Identities = 141/169 (83%) Strand = Plus / Minus Query: 317 gatggcaatgggcagcacgaggttgatgttgagcgccttgagcttgatggtggtgcagag 376 |||||||| ||| || |||||| ||| | || ||||||| |||||||| ||||||||| Sbjct: 181 gatggcaacggggaggacgaggctgacgccgaacgccttggccttgatggcggtgcagag 122 Query: 377 gcagagcgctgcgtcgaggtcagccacgccggataacagcgggcaacatttgtcgctggc 436 ||||||||| ||||||||||| || |||||||| | ||||||||| || |||||||||| Sbjct: 121 gcagagcgcggcgtcgaggtcggcgacgccggacagcagcgggcagcaggtgtcgctggc 62 Query: 437 attgctgccgattagcgcgtgcagcagcccgtcgagcgcgtccacgcac 485 ||| ||||| | |||||||| |||||||| ||||||||||||||| Sbjct: 61 cttggcgccgaccaccgcgtgcaccagcccgttcagcgcgtccacgcac 13
>ref|XM_473862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 109 bits (55), Expect = 2e-20 Identities = 133/159 (83%) Strand = Plus / Minus Query: 347 gagcgccttgagcttgatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgcc 406 |||||||||| |||||||| |||||||||||||||||| ||||||||||| || ||||| Sbjct: 501 gagcgccttggccttgatggcggtgcagaggcagagcgcggcgtcgaggtcggcgacgcc 442 Query: 407 ggataacagcgggcaacatttgtcgctggcattgctgccgattagcgcgtgcagcagccc 466 ||| | ||||||||| || |||||| ||| || ||||| | |||||||| |||||| Sbjct: 441 ggacagcagcgggcagcaggtgtcgccggcggtggcgccgaccaccgcgtgcaccagccc 382 Query: 467 gtcgagcgcgtccacgcaccccaacagtttcagggtgtc 505 || ||||||||||||||| ||| ||| ||||| ||||| Sbjct: 381 gttcagcgcgtccacgcacgccagcagcttcagcgtgtc 343
>dbj|AK062781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B03, full insert sequence Length = 713 Score = 95.6 bits (48), Expect = 2e-16 Identities = 102/120 (85%) Strand = Plus / Minus Query: 302 gttgacgagcacctcgatggcaatgggcagcacgaggttgatgttgagcgccttgagctt 361 |||||||||||| |||||||| ||| || |||||| ||| | |||||||||| ||| Sbjct: 280 gttgacgagcacggagatggcaacggggaggacgaggctgacgccgagcgccttggcctt 221 Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgccggataacagcgggca 421 ||||| |||||||||||||||||| ||||||||||| || |||||||| | ||||||||| Sbjct: 220 gatggcggtgcagaggcagagcgcggcgtcgaggtcggcgacgccggacagcagcgggca 161
>ref|XM_550375.1| Oryza sativa (japonica cultivar-group), mRNA Length = 992 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgcc 406 |||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 661 gatggtggtgcagaggcagagcgcggcgtccaggtccgccacgcc 617
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgcc 406 |||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 3455144 gatggtggtgcagaggcagagcgcggcgtccaggtccgccacgcc 3455188 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 338 gttgatgttgagcgccttgagcttgatggtggtgcagaggca 379 |||||||||||| ||||||| ||||||||||||||||||| Sbjct: 25844236 gttgatgttgaggagcttgagcctgatggtggtgcagaggca 25844195
>dbj|AP002864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0033B09 Length = 143545 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgcc 406 |||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 71848 gatggtggtgcagaggcagagcgcggcgtccaggtccgccacgcc 71892
>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone P0680A03 Length = 156054 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgcc 406 |||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 146698 gatggtggtgcagaggcagagcgcggcgtccaggtccgccacgcc 146742
>dbj|AK103637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033134F12, full insert sequence Length = 1013 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgcc 406 |||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 661 gatggtggtgcagaggcagagcgcggcgtccaggtccgccacgcc 617
>dbj|AK101305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033M04, full insert sequence Length = 992 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgcc 406 |||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 661 gatggtggtgcagaggcagagcgcggcgtccaggtccgccacgcc 617
>dbj|AK059170.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E12, full insert sequence Length = 1384 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgcc 406 |||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1078 gatggtggtgcagaggcagagcgcggcgtccaggtccgccacgcc 1034
>gb|AY105889.1| Zea mays PCO106909 mRNA sequence Length = 1420 Score = 58.0 bits (29), Expect = 5e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 335 gaggttgatgttgagcgccttgagcttgatggtggtgcagaggca 379 ||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 887 gaggttgatgttgaggagcctgagcttgatggtggtgcagaggca 843
>ref|NM_197672.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.15), mRNA Length = 429 Score = 54.0 bits (27), Expect = 8e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgccggataacagcgg 418 |||||||| |||||||||||||| || ||||||||||| || | |||||| | |||||| Sbjct: 330 cttgatggcggtgcagaggcagacggcggcgtcgaggtcggctaggccggacagcagcgg 271 Query: 419 gca 421 ||| Sbjct: 270 gca 268
>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete sequence Length = 144798 Score = 54.0 bits (27), Expect = 8e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgccggataacagcgg 418 |||||||| |||||||||||||| || ||||||||||| || | |||||| | |||||| Sbjct: 62067 cttgatggcggtgcagaggcagacggcggcgtcgaggtcggctaggccggacagcagcgg 62008 Query: 419 gca 421 ||| Sbjct: 62007 gca 62005 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 34182 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 34144 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 27468 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 27430
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 54.0 bits (27), Expect = 8e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgccggataacagcgg 418 |||||||| |||||||||||||| || ||||||||||| || | |||||| | |||||| Sbjct: 21143639 cttgatggcggtgcagaggcagacggcggcgtcgaggtcggctaggccggacagcagcgg 21143698 Query: 419 gca 421 ||| Sbjct: 21143699 gca 21143701 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Plus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 21178238 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 21178276 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Plus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 21171524 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 21171562
>dbj|AK102086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082M21, full insert sequence Length = 769 Score = 54.0 bits (27), Expect = 8e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgccggataacagcgg 418 |||||||| |||||||||||||| || ||||||||||| || | |||||| | |||||| Sbjct: 409 cttgatggcggtgcagaggcagacggcggcgtcgaggtcggctaggccggacagcagcgg 350 Query: 419 gca 421 ||| Sbjct: 349 gca 347
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 54.0 bits (27), Expect = 8e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtcagccacgccggataacagcgg 418 |||||||| |||||||||||||| || ||||||||||| || | |||||| | |||||| Sbjct: 21154903 cttgatggcggtgcagaggcagacggcggcgtcgaggtcggctaggccggacagcagcgg 21154962 Query: 419 gca 421 ||| Sbjct: 21154963 gca 21154965 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Plus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 21189502 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 21189540 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Plus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 21182788 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 21182826
>gb|BT017960.1| Zea mays clone EL01N0523B04.c mRNA sequence Length = 1282 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccac 403 |||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct: 789 gatggtggtgcagaggcacagcgccgcgtccaggtccgccac 748
>emb|X60432.1|ZMPRP Z.mays PRP gene Length = 1402 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccac 403 |||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct: 915 gatggtggtgcagaggcacagcgccgcgtccaggtccgccac 874
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0416A11 Length = 171519 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 338 gttgatgttgagcgccttgagcttgatggtggtgcagaggca 379 |||||||||||| ||||||| ||||||||||||||||||| Sbjct: 126440 gttgatgttgaggagcttgagcctgatggtggtgcagaggca 126399
>dbj|AK103715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033137N14, full insert sequence Length = 1338 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 338 gttgatgttgagcgccttgagcttgatggtggtgcagaggca 379 |||||||||||| ||||||| ||||||||||||||||||| Sbjct: 781 gttgatgttgaggagcttgagcctgatggtggtgcagaggca 740
>gb|AY105001.1| Zea mays PCO123892 mRNA sequence Length = 1144 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 362 gatggtggtgcagaggcagagcgctgcgtcgaggtcagccac 403 |||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct: 576 gatggtggtgcagaggcacagcgccgcgtccaggtccgccac 535
>ref|NM_197681.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.6), mRNA Length = 399 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 297 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 259
>ref|NM_197679.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.8), mRNA Length = 402 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 303 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 265
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 189845 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 189807 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 187141 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 187103
>gb|AY466108.1| Oryza sativa (japonica cultivar-group) lipid transfer protein-like protein (LTP1) mRNA, complete cds Length = 772 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 435 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 397
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0080O10, from chromosome 3, complete sequence Length = 127917 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 26912 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 26874 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 24208 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 24170
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0079B22, from chromosome 3, complete sequence Length = 156933 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 123845 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 123807 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 121141 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 121103
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 189845 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 189807 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 187141 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 187103
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence Length = 162241 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Plus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 75513 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 75551 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Plus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 72809 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 72847
>dbj|AK103618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133L09, full insert sequence Length = 780 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 456 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 418
>dbj|AK062911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G07, full insert sequence Length = 757 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 390 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 352
>dbj|AK062654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E10, full insert sequence Length = 736 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 417 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 379
>dbj|AK062381.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B09, full insert sequence Length = 702 Score = 46.1 bits (23), Expect = 0.19 Identities = 35/39 (89%) Strand = Plus / Minus Query: 359 cttgatggtggtgcagaggcagagcgctgcgtcgaggtc 397 |||||||| |||||||||||||| || ||||||||||| Sbjct: 366 cttgatggcggtgcagaggcagacggcggcgtcgaggtc 328
>gb|AY748350.1| Fenneropenaeus chinensis heat shock protein 70 cognate mRNA, complete cds Length = 2090 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 656 ttggtggggatggtggtgttac 677 |||||||||||||||||||||| Sbjct: 1334 ttggtggggatggtggtgttac 1313
>ref|XM_370461.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06958.4) partial mRNA Length = 1956 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 656 ttggtggggatggtggtgttac 677 |||||||||||||||||||||| Sbjct: 1265 ttggtggggatggtggtgttac 1244
>gb|AY645906.1| Litopenaeus vannamei heat shock protein 70 gene, complete cds Length = 1983 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 656 ttggtggggatggtggtgttac 677 |||||||||||||||||||||| Sbjct: 1272 ttggtggggatggtggtgttac 1251
>gb|DQ173922.1| Pachygrapsus marmoratus heat shock protein 70 mRNA, complete cds Length = 2195 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 656 ttggtggggatggtggtgttac 677 |||||||||||||||||||||| Sbjct: 1367 ttggtggggatggtggtgttac 1346
>gb|AF474375.1| Penaeus monodon heat shock protein 70 mRNA, complete cds Length = 2207 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 656 ttggtggggatggtggtgttac 677 |||||||||||||||||||||| Sbjct: 1308 ttggtggggatggtggtgttac 1287
>ref|XM_503162.1| Yarrowia lipolytica CLIB122, YALI0D22682g predicted mRNA Length = 2838 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 113 catgttccacagctccacatca 134 |||||||||||||||||||||| Sbjct: 438 catgttccacagctccacatca 417
>emb|BX470135.8| Zebrafish DNA sequence from clone RP71-15H20 in linkage group 8, complete sequence Length = 147292 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Plus Query: 656 ttggtggggatggtggtgttac 677 |||||||||||||||||||||| Sbjct: 3129 ttggtggggatggtggtgttac 3150
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 catgttccacagctccacatca 134 |||||||||||||||||||||| Sbjct: 2936142 catgttccacagctccacatca 2936163
>ref|XM_474092.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 783 Score = 42.1 bits (21), Expect = 3.0 Identities = 36/41 (87%) Strand = Plus / Minus Query: 340 tgatgttgagcgccttgagcttgatggtggtgcagaggcag 380 |||||| |||| ||||| |||||||| ||||||||||||| Sbjct: 706 tgatgtcgagcaccttggccttgatggcggtgcagaggcag 666
>gb|AY270351.1| Homo sapiens clone SKT02-H1 putative promoter sequence Length = 473 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 351 gccttgagcttgatggtggtgcaga 375 |||||||||||| |||||||||||| Sbjct: 246 gccttgagcttggtggtggtgcaga 270
>emb|AL022476.2|HS323M22 Human DNA sequence from clone RP3-323M22 on chromosome 22, complete sequence Length = 194523 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 351 gccttgagcttgatggtggtgcaga 375 |||||||||||| |||||||||||| Sbjct: 19848 gccttgagcttggtggtggtgcaga 19824
>gb|AC008763.9| Homo sapiens chromosome 19 clone CTD-3214H19, complete sequence Length = 177962 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 588 ggtgttggtggcatttttggc 608 ||||||||||||||||||||| Sbjct: 122499 ggtgttggtggcatttttggc 122479
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 677 cccggtgtcggcgatggcggc 697 ||||||||||||||||||||| Sbjct: 102409 cccggtgtcggcgatggcggc 102389
>emb|AL116903.1|CNS01DJJ Botrytis cinerea strain T4 cDNA library Length = 650 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 202 atcgcttgcagatgaaggtgatgct 226 ||||||||||||||||| ||||||| Sbjct: 272 atcgcttgcagatgaagatgatgct 248
>emb|AL116470.1|CNS01D7I Botrytis cinerea strain T4 cDNA library Length = 780 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 202 atcgcttgcagatgaaggtgatgct 226 ||||||||||||||||| ||||||| Sbjct: 383 atcgcttgcagatgaagatgatgct 359
>emb|AL113837.1|CNS01B6D Botrytis cinerea strain T4 cDNA library Length = 660 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 202 atcgcttgcagatgaaggtgatgct 226 ||||||||||||||||| ||||||| Sbjct: 142 atcgcttgcagatgaagatgatgct 118
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 679 cggtgtcggcgatggcggcga 699 ||||||||||||||||||||| Sbjct: 1966825 cggtgtcggcgatggcggcga 1966845
>dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F11, full insert sequence Length = 1255 Score = 42.1 bits (21), Expect = 3.0 Identities = 36/41 (87%) Strand = Plus / Minus Query: 340 tgatgttgagcgccttgagcttgatggtggtgcagaggcag 380 |||||| |||| ||||| |||||||| ||||||||||||| Sbjct: 856 tgatgtcgagcaccttggccttgatggcggtgcagaggcag 816
>dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F10, full insert sequence Length = 1242 Score = 42.1 bits (21), Expect = 3.0 Identities = 36/41 (87%) Strand = Plus / Minus Query: 340 tgatgttgagcgccttgagcttgatggtggtgcagaggcag 380 |||||| |||| ||||| |||||||| ||||||||||||| Sbjct: 856 tgatgtcgagcaccttggccttgatggcggtgcagaggcag 816
>dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H11, full insert sequence Length = 1251 Score = 42.1 bits (21), Expect = 3.0 Identities = 36/41 (87%) Strand = Plus / Minus Query: 340 tgatgttgagcgccttgagcttgatggtggtgcagaggcag 380 |||||| |||| ||||| |||||||| ||||||||||||| Sbjct: 852 tgatgtcgagcaccttggccttgatggcggtgcagaggcag 812
>dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H13, full insert sequence Length = 1272 Score = 42.1 bits (21), Expect = 3.0 Identities = 36/41 (87%) Strand = Plus / Minus Query: 340 tgatgttgagcgccttgagcttgatggtggtgcagaggcag 380 |||||| |||| ||||| |||||||| ||||||||||||| Sbjct: 860 tgatgtcgagcaccttggccttgatggcggtgcagaggcag 820
>dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F03, full insert sequence Length = 1257 Score = 42.1 bits (21), Expect = 3.0 Identities = 36/41 (87%) Strand = Plus / Minus Query: 340 tgatgttgagcgccttgagcttgatggtggtgcagaggcag 380 |||||| |||| ||||| |||||||| ||||||||||||| Sbjct: 858 tgatgtcgagcaccttggccttgatggcggtgcagaggcag 818
>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete sequence Length = 76546 Score = 42.1 bits (21), Expect = 3.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 340 tgatgttgagcgccttgagcttgatggtggtgcagaggcag 380 |||||| |||| ||||| |||||||| ||||||||||||| Sbjct: 22448 tgatgtcgagcaccttggccttgatggcggtgcagaggcag 22488
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05, complete sequence Length = 142556 Score = 42.1 bits (21), Expect = 3.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 340 tgatgttgagcgccttgagcttgatggtggtgcagaggcag 380 |||||| |||| ||||| |||||||| ||||||||||||| Sbjct: 89499 tgatgtcgagcaccttggccttgatggcggtgcagaggcag 89539 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,023,349 Number of Sequences: 3902068 Number of extensions: 6023349 Number of successful extensions: 118684 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117733 Number of HSP's gapped (non-prelim): 947 length of query: 866 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 843 effective length of database: 17,143,297,704 effective search space: 14451799964472 effective search space used: 14451799964472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)