ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31n24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LNT_RHILO (Q98BJ6) Apolipoprotein N-acyltransferase (EC 2.3.1.-)... 30 2.3
2SYA_LEGPL (Q5WVQ2) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 29 3.9
3HRP3_SCHPO (O14139) Chromodomain helicase hrp3 (EC 3.6.1.-) (ATP... 29 3.9

>LNT_RHILO (Q98BJ6) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP|
           N-acyltransferase)
          Length = 530

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 166 WGW--GIIATXXLP*FFFLRHCIAIIGLAVYGFWRACFTMLP 47
           WGW   ++A        FL   +A++G A Y F+ ACF   P
Sbjct: 12  WGWRRALVA--------FLAGALAVLGQAPYDFFAACFISFP 45



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>SYA_LEGPL (Q5WVQ2) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 860

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 83  VWILACLFYDVARLGCLHPLPK 18
           +W L  + ++  R GCLHPLPK
Sbjct: 200 IWNLVFMQFNRDREGCLHPLPK 221



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>HRP3_SCHPO (O14139) Chromodomain helicase hrp3 (EC 3.6.1.-) (ATP-dependent|
           helicase hrp3)
          Length = 1388

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +2

Query: 47  WQHRKTSTPESIHGKPNYGNTMPQKKKLWQXXXSNYSPSPAYITGG 184
           +Q R+ S      G  NYGN+ P+ +KL Q         P+YITGG
Sbjct: 337 FQEREESALSPSRGT-NYGNSRPKYRKLEQ--------QPSYITGG 373


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,977,156
Number of Sequences: 219361
Number of extensions: 464446
Number of successful extensions: 1049
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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