| Clone Name | rbags31n24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478636.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2195 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Minus Query: 44 atctggcaacatcgtaaaacaagcacgccagaa 76 ||||||||||||| |||||||||||| |||||| Sbjct: 2095 atctggcaacatcttaaaacaagcacaccagaa 2063
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Minus Query: 44 atctggcaacatcgtaaaacaagcacgccagaa 76 ||||||||||||| |||||||||||| |||||| Sbjct: 21579866 atctggcaacatcttaaaacaagcacaccagaa 21579834
>dbj|AP004235.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0006G05 Length = 56865 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Minus Query: 44 atctggcaacatcgtaaaacaagcacgccagaa 76 ||||||||||||| |||||||||||| |||||| Sbjct: 26240 atctggcaacatcttaaaacaagcacaccagaa 26208
>dbj|AK100024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D04, full insert sequence Length = 2198 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Minus Query: 44 atctggcaacatcgtaaaacaagcacgccagaa 76 ||||||||||||| |||||||||||| |||||| Sbjct: 2098 atctggcaacatcttaaaacaagcacaccagaa 2066
>dbj|AK058282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D06, full insert sequence Length = 1394 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Minus Query: 44 atctggcaacatcgtaaaacaagcacgccagaa 76 ||||||||||||| |||||||||||| |||||| Sbjct: 1354 atctggcaacatcttaaaacaagcacaccagaa 1322
>dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1612_A04 Length = 124833 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Minus Query: 44 atctggcaacatcgtaaaacaagcacgccagaa 76 ||||||||||||| |||||||||||| |||||| Sbjct: 10322 atctggcaacatcttaaaacaagcacaccagaa 10290
>gb|AC122023.3| Mus musculus BAC clone RP24-372O13 from 12, complete sequence Length = 179947 Score = 42.1 bits (21), Expect = 0.61 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 aattatggcaatacaatgcct 115 ||||||||||||||||||||| Sbjct: 57570 aattatggcaatacaatgcct 57590
>gb|AC092939.8| Homo sapiens 3 BAC RP11-791G22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167152 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 ctggcaacatcgtaaaacaa 65 |||||||||||||||||||| Sbjct: 26710 ctggcaacatcgtaaaacaa 26729
>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete sequence Length = 184128 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 148 caattattccccatcccca 166 ||||||||||||||||||| Sbjct: 95543 caattattccccatcccca 95561
>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence Length = 218079 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 148 caattattccccatcccca 166 ||||||||||||||||||| Sbjct: 194750 caattattccccatcccca 194768
>gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete sequence Length = 105045 Score = 38.2 bits (19), Expect = 9.5 Identities = 25/27 (92%) Strand = Plus / Plus Query: 51 aacatcgtaaaacaagcacgccagaat 77 |||||| |||||||||||||| ||||| Sbjct: 103825 aacatcttaaaacaagcacgctagaat 103851
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 148 caattattccccatcccca 166 ||||||||||||||||||| Sbjct: 569826 caattattccccatcccca 569808
>gb|AC150255.7| Aedes aegypti, clone XX-85K2, complete sequence Length = 164368 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 agcccaattatggcaatac 108 ||||||||||||||||||| Sbjct: 164122 agcccaattatggcaatac 164104
>gb|AF098329.1|AF098329 Drosophila virilis eyeless protein gene; exons 2 and 3, partial sequence; intron 2, complete sequence; and partial cds Length = 5597 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 caattatggcaatacaatgcctc 116 |||||||||||| |||||||||| Sbjct: 2241 caattatggcaacacaatgcctc 2263 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 922,246 Number of Sequences: 3902068 Number of extensions: 922246 Number of successful extensions: 56144 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56091 Number of HSP's gapped (non-prelim): 53 length of query: 191 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 169 effective length of database: 17,147,199,772 effective search space: 2897876761468 effective search space used: 2897876761468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)