ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31n24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_478636.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.002
3dbj|AP004235.4| Oryza sativa (japonica cultivar-group) genomic D... 50 0.002
4dbj|AK100024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.002
5dbj|AK058282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.002
6dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.002
7gb|AC122023.3| Mus musculus BAC clone RP24-372O13 from 12, compl... 42 0.61
8gb|AC092939.8| Homo sapiens 3 BAC RP11-791G22 (Roswell Park Canc... 40 2.4
9gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosom... 38 9.5
10gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, com... 38 9.5
11gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete s... 38 9.5
12emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 38 9.5
13gb|AC150255.7| Aedes aegypti, clone XX-85K2, complete sequence 38 9.5
14gb|AF098329.1|AF098329 Drosophila virilis eyeless protein gene; ... 38 9.5

>ref|XM_478636.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2195

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 44   atctggcaacatcgtaaaacaagcacgccagaa 76
            ||||||||||||| |||||||||||| ||||||
Sbjct: 2095 atctggcaacatcttaaaacaagcacaccagaa 2063



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 44       atctggcaacatcgtaaaacaagcacgccagaa 76
                ||||||||||||| |||||||||||| ||||||
Sbjct: 21579866 atctggcaacatcttaaaacaagcacaccagaa 21579834



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>dbj|AP004235.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0006G05
          Length = 56865

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 44    atctggcaacatcgtaaaacaagcacgccagaa 76
             ||||||||||||| |||||||||||| ||||||
Sbjct: 26240 atctggcaacatcttaaaacaagcacaccagaa 26208



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>dbj|AK100024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D04, full
            insert sequence
          Length = 2198

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 44   atctggcaacatcgtaaaacaagcacgccagaa 76
            ||||||||||||| |||||||||||| ||||||
Sbjct: 2098 atctggcaacatcttaaaacaagcacaccagaa 2066



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>dbj|AK058282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D06, full
            insert sequence
          Length = 1394

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 44   atctggcaacatcgtaaaacaagcacgccagaa 76
            ||||||||||||| |||||||||||| ||||||
Sbjct: 1354 atctggcaacatcttaaaacaagcacaccagaa 1322



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>dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1612_A04
          Length = 124833

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 44    atctggcaacatcgtaaaacaagcacgccagaa 76
             ||||||||||||| |||||||||||| ||||||
Sbjct: 10322 atctggcaacatcttaaaacaagcacaccagaa 10290



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>gb|AC122023.3| Mus musculus BAC clone RP24-372O13 from 12, complete sequence
          Length = 179947

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    aattatggcaatacaatgcct 115
             |||||||||||||||||||||
Sbjct: 57570 aattatggcaatacaatgcct 57590



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>gb|AC092939.8| Homo sapiens 3 BAC RP11-791G22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167152

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    ctggcaacatcgtaaaacaa 65
             ||||||||||||||||||||
Sbjct: 26710 ctggcaacatcgtaaaacaa 26729



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>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete
             sequence
          Length = 184128

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 148   caattattccccatcccca 166
             |||||||||||||||||||
Sbjct: 95543 caattattccccatcccca 95561



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>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence
          Length = 218079

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 148    caattattccccatcccca 166
              |||||||||||||||||||
Sbjct: 194750 caattattccccatcccca 194768



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>gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete sequence
          Length = 105045

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 51     aacatcgtaaaacaagcacgccagaat 77
              |||||| |||||||||||||| |||||
Sbjct: 103825 aacatcttaaaacaagcacgctagaat 103851



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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
              hansenii
          Length = 2336804

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 148    caattattccccatcccca 166
              |||||||||||||||||||
Sbjct: 569826 caattattccccatcccca 569808



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>gb|AC150255.7| Aedes aegypti, clone XX-85K2, complete sequence
          Length = 164368

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 90     agcccaattatggcaatac 108
              |||||||||||||||||||
Sbjct: 164122 agcccaattatggcaatac 164104



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>gb|AF098329.1|AF098329 Drosophila virilis eyeless protein gene; exons 2 and 3, partial
            sequence; intron 2, complete sequence; and partial cds
          Length = 5597

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 94   caattatggcaatacaatgcctc 116
            |||||||||||| ||||||||||
Sbjct: 2241 caattatggcaacacaatgcctc 2263


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 922,246
Number of Sequences: 3902068
Number of extensions: 922246
Number of successful extensions: 56144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56091
Number of HSP's gapped (non-prelim): 53
length of query: 191
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 169
effective length of database: 17,147,199,772
effective search space: 2897876761468
effective search space used: 2897876761468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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