ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32c13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC096887.2| Homo sapiens chromosome 3 clone RP11-5O17, comple... 44 0.42
2dbj|AB194045.1| Leptotrombidium akamushi mitochondrial DNA, comp... 44 0.42
3gb|AC008361.8|AC008361 Drosophila melanogaster, chromosome 3R, r... 44 0.42
4gb|AE003720.3| Drosophila melanogaster chromosome 3R, section 58... 44 0.42
5ref|XM_479280.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
6ref|XM_506502.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 1.7
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
8dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
9dbj|AK102122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
10dbj|AK073381.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
11tpe|BN000636.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 42 1.7
12gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 6.6
13gb|AC160765.4| Mus musculus BAC clone RP23-26O24 from chromosome... 40 6.6
14gb|U41748.1| Caenorhabditis elegans cosmid C31H2, complete sequence 40 6.6
15gb|AC122442.4| Mus musculus BAC clone RP24-230D14 from chromosom... 40 6.6
16gb|AE014075.1| Escherichia coli CFT073, complete genome 40 6.6
17gb|CP000243.1| Escherichia coli UTI89, complete genome 40 6.6
18gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 6.6
19gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 6.6
20emb|X68301.1|ECNUOO E.coli DNA sequence of nuo operon 40 6.6
21gb|AE008804.1| Salmonella typhimurium LT2, section 108 of 220 of... 40 6.6
22emb|AL627274.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 6.6
23dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 6.6
24ref|NM_171677.1| Caenorhabditis elegans C31H2.1a (C31H2.1) mRNA,... 40 6.6
25ref|NM_171949.3| Caenorhabditis elegans C31H2.1b (C31H2.1) mRNA,... 40 6.6
26gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 6.6
27gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 6.6
28gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 6.6
29gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 6.6
30gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 6.6
31dbj|AP000741.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.6
32gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 40 6.6
33gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 6.6
34dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 6.6
35gb|AC161865.4| Mus musculus chromosome 19, clone RP23-218F7, com... 40 6.6
36gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 40 6.6
37gb|CP000036.1| Shigella boydii Sb227, complete genome 40 6.6
38gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 6.6
39gb|L22504.1|STYNUOD Salmonella typhimurium NADH dehydrogenase su... 40 6.6
40gb|L25055.1|ECONUOD Escherichia coli NADH dehydrogenase (nuoD), ... 40 6.6 
>gb|AC096887.2| Homo sapiens chromosome 3 clone RP11-5O17, complete sequence
          Length = 171289

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 145    tagggggatccaaccatggagc 166
              ||||||||||||||||||||||
Sbjct: 130238 tagggggatccaaccatggagc 130259
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>dbj|AB194045.1| Leptotrombidium akamushi mitochondrial DNA, complete genome
          Length = 13698

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 205  tgttgattctcgtgcatacttt 226
            ||||||||||||||||||||||
Sbjct: 1892 tgttgattctcgtgcatacttt 1913
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>gb|AC008361.8|AC008361 Drosophila melanogaster, chromosome 3R, region 90D-90D, BAC clone
             BACR35E22, complete sequence
          Length = 177471

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 101   aataacaatgacagtagatatt 122
             ||||||||||||||||||||||
Sbjct: 46563 aataacaatgacagtagatatt 46584
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>gb|AE003720.3| Drosophila melanogaster chromosome 3R, section 58 of 118 of the
             complete sequence
          Length = 228842

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 101   aataacaatgacagtagatatt 122
             ||||||||||||||||||||||
Sbjct: 31439 aataacaatgacagtagatatt 31460
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>ref|XM_479280.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1227

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 370 cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 422
           ||||||| |||  ||||| ||| |||||||||| ||||||  |||||||||||
Sbjct: 850 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 798
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>ref|XM_506502.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1340_C08.125
           mRNA
          Length = 1231

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 370 cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 422
           ||||||| |||  ||||| ||| |||||||||| ||||||  |||||||||||
Sbjct: 850 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 798
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                     
Query: 370      cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 422
                ||||||| |||  ||||| ||| |||||||||| ||||||  |||||||||||
Sbjct: 26551003 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 26550951
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>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1340_C08
          Length = 192167

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 370   cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 422
             ||||||| |||  ||||| ||| |||||||||| ||||||  |||||||||||
Sbjct: 96274 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 96222
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>dbj|AK102122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084O03, full
           insert sequence
          Length = 1231

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 370 cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 422
           ||||||| |||  ||||| ||| |||||||||| ||||||  |||||||||||
Sbjct: 850 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 798
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>dbj|AK073381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028K07, full
           insert sequence
          Length = 1227

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 370 cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 422
           ||||||| |||  ||||| ||| |||||||||| ||||||  |||||||||||
Sbjct: 850 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 798
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>tpe|BN000636.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx107 gene
           for class III peroxidase 107 precursor, exons 1-2
          Length = 1067

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 370 cggcgtctgaggtgaacaacactttcctgtcgatcacgttttggtagtactgc 422
           ||||||| |||  ||||| ||| |||||||||| ||||||  |||||||||||
Sbjct: 900 cggcgtcggagtcgaacagcaccttcctgtcgagcacgttccggtagtactgc 848
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gttgttgattctcgtgcata 222
               ||||||||||||||||||||
Sbjct: 2410147 gttgttgattctcgtgcata 2410166
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>gb|AC160765.4| Mus musculus BAC clone RP23-26O24 from chromosome 13, complete sequence
          Length = 234761

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    aaccatggagccagccaacc 175
              ||||||||||||||||||||
Sbjct: 187964 aaccatggagccagccaacc 187945
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>gb|U41748.1| Caenorhabditis elegans cosmid C31H2, complete sequence
          Length = 40553

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   gacgaagttacatctcgtcc 143
             ||||||||||||||||||||
Sbjct: 23285 gacgaagttacatctcgtcc 23304
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>gb|AC122442.4| Mus musculus BAC clone RP24-230D14 from chromosome 19, complete
             sequence
          Length = 180516

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 271   ttcccatattctccatggctctct 294
             |||||||| |||||||||||||||
Sbjct: 54313 ttcccataatctccatggctctct 54290
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gttgttgattctcgtgcata 222
               ||||||||||||||||||||
Sbjct: 2684539 gttgttgattctcgtgcata 2684558
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gttgttgattctcgtgcata 222
               ||||||||||||||||||||
Sbjct: 2534176 gttgttgattctcgtgcata 2534195
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 231     atctctgcgccttggtcggc 250
               ||||||||||||||||||||
Sbjct: 1617018 atctctgcgccttggtcggc 1617037
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gttgttgattctcgtgcata 222
               ||||||||||||||||||||
Sbjct: 2400056 gttgttgattctcgtgcata 2400075
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>emb|X68301.1|ECNUOO E.coli DNA sequence of nuo operon
          Length = 15865

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 203  gttgttgattctcgtgcata 222
            ||||||||||||||||||||
Sbjct: 3407 gttgttgattctcgtgcata 3388
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>gb|AE008804.1| Salmonella typhimurium LT2, section 108 of 220 of the complete genome
          Length = 20092

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   gttgttgattctcgtgcata 222
             ||||||||||||||||||||
Sbjct: 12582 gttgttgattctcgtgcata 12601
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>emb|AL627274.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 10/20
          Length = 256050

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   gttgttgattctcgtgcata 222
             ||||||||||||||||||||
Sbjct: 90492 gttgttgattctcgtgcata 90511
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gttgttgattctcgtgcata 222
               ||||||||||||||||||||
Sbjct: 2406704 gttgttgattctcgtgcata 2406723
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>ref|NM_171677.1| Caenorhabditis elegans C31H2.1a (C31H2.1) mRNA, complete cds
          Length = 2091

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 124  gacgaagttacatctcgtcc 143
            ||||||||||||||||||||
Sbjct: 1468 gacgaagttacatctcgtcc 1487
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>ref|NM_171949.3| Caenorhabditis elegans C31H2.1b (C31H2.1) mRNA, complete cds
          Length = 2398

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 124  gacgaagttacatctcgtcc 143
            ||||||||||||||||||||
Sbjct: 1323 gacgaagttacatctcgtcc 1342
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 267     atttttcccatattctccat 286
               ||||||||||||||||||||
Sbjct: 2748448 atttttcccatattctccat 2748429
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gttgttgattctcgtgcata 222
               ||||||||||||||||||||
Sbjct: 2389604 gttgttgattctcgtgcata 2389623
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    gttgttgattctcgtgcata 222
              ||||||||||||||||||||
Sbjct: 611452 gttgttgattctcgtgcata 611433
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    gttgttgattctcgtgcata 222
              ||||||||||||||||||||
Sbjct: 613220 gttgttgattctcgtgcata 613201
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gttgttgattctcgtgcata 222
               ||||||||||||||||||||
Sbjct: 2450863 gttgttgattctcgtgcata 2450882
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>dbj|AP000741.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-63O14, complete
              sequence
          Length = 156136

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    tggagccagccaaccagccc 180
              ||||||||||||||||||||
Sbjct: 133637 tggagccagccaaccagccc 133618
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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     atttttcccatattctccat 286
               ||||||||||||||||||||
Sbjct: 1545879 atttttcccatattctccat 1545898
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gttgttgattctcgtgcata 222
               ||||||||||||||||||||
Sbjct: 3198160 gttgttgattctcgtgcata 3198179
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gttgttgattctcgtgcata 222
               ||||||||||||||||||||
Sbjct: 3128204 gttgttgattctcgtgcata 3128223
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>gb|AC161865.4| Mus musculus chromosome 19, clone RP23-218F7, complete sequence
          Length = 206019

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 271   ttcccatattctccatggctctct 294
             |||||||| |||||||||||||||
Sbjct: 75077 ttcccataatctccatggctctct 75100
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gttgttgattctcgtgcata 222
               ||||||||||||||||||||
Sbjct: 2281789 gttgttgattctcgtgcata 2281808
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gttgttgattctcgtgcata 222
               ||||||||||||||||||||
Sbjct: 2308852 gttgttgattctcgtgcata 2308871
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gttgttgattctcgtgcata 222
               ||||||||||||||||||||
Sbjct: 2473034 gttgttgattctcgtgcata 2473053
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>gb|L22504.1|STYNUOD Salmonella typhimurium NADH dehydrogenase subunits nuoD, nuoG and
           nuoE, nuoF (nuo) genes, complete cds
          Length = 3950

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 203 gttgttgattctcgtgcata 222
           ||||||||||||||||||||
Sbjct: 267 gttgttgattctcgtgcata 248
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>gb|L25055.1|ECONUOD Escherichia coli NADH dehydrogenase (nuoD), (nuoE), (nuoF), (nuoG)
            gene, complete cds
          Length = 3667

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 203  gttgttgattctcgtgcata 222
            ||||||||||||||||||||
Sbjct: 1290 gttgttgattctcgtgcata 1271


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,146,829
Number of Sequences: 3902068
Number of extensions: 3146829
Number of successful extensions: 55776
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55489
Number of HSP's gapped (non-prelim): 287
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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