ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags32c12 |
|---|---|
| Clone Library Name | barley_pub |
>DSPP_HUMAN (Q9NZW4) Dentin sialophosphoprotein precursor [Contains: Dentin| phosphoprotein (Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)] Length = 1253 Score = 34.7 bits (78), Expect = 0.23 Identities = 22/57 (38%), Positives = 30/57 (52%) Frame = -1 Query: 611 DSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNSSRNFGRFDSFDEADPFGST 441 DS S DS+ +S S S +S +S+ DSSNSS + DS D +D GS+ Sbjct: 1011 DSSDSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSGSS 1067 Score = 33.9 bits (76), Expect = 0.39 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -1 Query: 611 DSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNSSRNFGRFDSFDEADPFGSTGPF 432 DS +S+ + +S+ DS +S +++ DSSNSS + DS D +D S+ Sbjct: 625 DSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSS 684 Query: 431 KAS 423 +S Sbjct: 685 SSS 687 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/63 (34%), Positives = 31/63 (49%) Frame = -1 Query: 611 DSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNSSRNFGRFDSFDEADPFGSTGPF 432 DS S DS+ +S S S +S +S+ DSSNSS + DS D +D S+ Sbjct: 990 DSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSNSS 1049 Query: 431 KAS 423 +S Sbjct: 1050 DSS 1052 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = -1 Query: 611 DSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNSSRNFGRFDSFDEADPFGSTGPF 432 +S S DS+ +S S S +S +S+ DSSNSS + DS D +D S+ Sbjct: 984 NSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSDSSDSSDSSDSS 1043 Query: 431 KASGA 417 +S + Sbjct: 1044 DSSNS 1048 Score = 30.4 bits (67), Expect = 4.3 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = -1 Query: 611 DSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNSSRNFGRFDSFDEADPFGST 441 +S S DS+ +S S S +S +S+ DSSNSS + DS D +D S+ Sbjct: 1095 ESSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSS 1151 Score = 30.0 bits (66), Expect = 5.7 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = -1 Query: 611 DSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNSSRNFGRFDSFDEADPFGSTGPF 432 DS S DS+ S + S +S+ +S+ DSSNSS + DS + +D S Sbjct: 919 DSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSGDSSNSSDSSDSNSSD 978 Query: 431 KASGARS 411 + + S Sbjct: 979 SSDSSNS 985 Score = 29.6 bits (65), Expect = 7.4 Identities = 19/49 (38%), Positives = 25/49 (51%) Frame = -1 Query: 611 DSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNSSRNFGRFDSFD 465 DS S DS+ S S S +S+ +S+ DSSNSS + DS D Sbjct: 667 DSSDSSDSSDSSSSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSD 715 Score = 29.3 bits (64), Expect = 9.7 Identities = 21/57 (36%), Positives = 29/57 (50%) Frame = -1 Query: 611 DSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNSSRNFGRFDSFDEADPFGST 441 DS S DS+ +S DS SS +S+ DSSNSS + +S D +D S+ Sbjct: 796 DSSNSSDSSNSSDSS----DSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSS 848 Score = 29.3 bits (64), Expect = 9.7 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = -1 Query: 611 DSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNSSRNFGRFDSFDEADPFGST 441 DS S +S+ +S S S +SS +S++ DSSNSS DS D +D S+ Sbjct: 655 DSSDSSNSSNSSDSSDSSDSSDSSSSSDSSSSSDSSNSS------DSSDSSDSSNSS 705
>RADA_ECOLI (P24554) DNA repair protein radA (DNA repair protein sms)| Length = 460 Score = 32.7 bits (73), Expect = 0.87 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 2/41 (4%) Frame = +2 Query: 188 QKMSTLYVGMED--RKNAHRANRSELPTKKMNPLYCTSVEQ 304 Q+M TLYV E+ ++ A RA+R LPT +N L TS+EQ Sbjct: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQ 161
>DSPP_MOUSE (P97399) Dentin sialophosphoprotein precursor (Dentin matrix| protein 3) (DMP-3) [Contains: Dentin phosphoprotein (Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)] Length = 934 Score = 32.0 bits (71), Expect = 1.5 Identities = 21/57 (36%), Positives = 29/57 (50%) Frame = -1 Query: 611 DSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNSSRNFGRFDSFDEADPFGST 441 DS S DS+ +S S S +S +S+ DSSNSS + DS D +D S+ Sbjct: 775 DSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSS 831 Score = 32.0 bits (71), Expect = 1.5 Identities = 21/57 (36%), Positives = 28/57 (49%) Frame = -1 Query: 611 DSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNSSRNFGRFDSFDEADPFGST 441 DS S DS+ S S S +S +S+ DSSNSS + DS D +D S+ Sbjct: 727 DSSSSSDSSDSSSSSDSSDSSDSSDSSDSSESSDSSNSSDSSDSSDSSDSSDSSDSS 783 Score = 29.3 bits (64), Expect = 9.7 Identities = 21/57 (36%), Positives = 29/57 (50%) Frame = -1 Query: 611 DSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNSSRNFGRFDSFDEADPFGST 441 DS S DS+ +S S S +S +S+ DSSNSS + DS D +D S+ Sbjct: 760 DSSNSSDSSDSSDSSDSSDSSDSSDSSDSS---DSSNSSDSSDSSDSSDSSDSSNSS 813
>RADA_SALTY (P24517) DNA repair protein radA (DNA repair protein sms)| Length = 460 Score = 31.6 bits (70), Expect = 1.9 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%) Frame = +2 Query: 188 QKMSTLYVGMED--RKNAHRANRSELPTKKMNPLYCTSVEQ 304 ++M TLYV E+ ++ A RA+R LPT +N L TS+EQ Sbjct: 121 EQMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQ 161
>GUN_PHAVU (P22503) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Abscission cellulase) Length = 496 Score = 31.6 bits (70), Expect = 1.9 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 9/97 (9%) Frame = +2 Query: 17 ILTHDGLELSSTTSTSVYIVQKERNGNRAHAR*VSCCFKDTSHYKQRKISG-------YF 175 + T D L TTS+++ + R NR H ++C +SH+ +I G Y Sbjct: 336 LFTRDSSNLQYTTSSTMVLFIFSRILNRNHINGINC---GSSHFTASQIRGFAKTQVEYI 392 Query: 176 TGHNQKMSTLYVGMEDR--KNAHRANRSELPTKKMNP 280 G N + VG + K H S +P+ K++P Sbjct: 393 LGKNPMKMSYMVGFGSKYPKQLHHRG-SSIPSIKVHP 428
>ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7 protein)| Length = 892 Score = 30.8 bits (68), Expect = 3.3 Identities = 18/40 (45%), Positives = 23/40 (57%) Frame = -1 Query: 617 RFDSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNS 498 R S AVP S FS F S++ SKG SA+G + S+S Sbjct: 169 RHSSSSKPPLAVPPTSVFSFFPSLSKSKGGSASGSNRSSS 208
>TRM1_METTH (O27258) N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC| 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 380 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -1 Query: 554 DSVTSSKGESAAGFDSSNSSR-NFGRFDSFDEADPFGSTGPFKASGARS 411 +SV +S + D+S R N GRFD D DPFG+ PF S A S Sbjct: 95 NSVINSVSPEVSREDASIFLRSNHGRFDVID-IDPFGTPAPFMDSAAAS 142
>MK13_RAT (Q9WTY9) Mitogen-activated protein kinase 13 (EC 2.7.11.24)| (Stress-activated protein kinase 4) (Mitogen-activated protein kinase p38 delta) (MAP kinase p38 delta) Length = 366 Score = 30.8 bits (68), Expect = 3.3 Identities = 16/49 (32%), Positives = 29/49 (59%) Frame = +1 Query: 463 SSKESNRPKFLELFDESNPAALSPLELVTESNLEKRLSCGTALSWDLKE 609 S +S + F +LF ++P A+ L+ + E +++KRL+ AL+ L E Sbjct: 261 SLPQSPKKDFTQLFPRASPQAVDLLDKMLELDVDKRLTAAQALAHPLFE 309
>DSPP_RAT (Q62598) Dentin sialophosphoprotein precursor [Contains: Dentin| phosphoprotein (Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)] Length = 687 Score = 30.8 bits (68), Expect = 3.3 Identities = 23/67 (34%), Positives = 30/67 (44%) Frame = -1 Query: 611 DSFRSQDSAVPQESRFSRFDSVTSSKGESAAGFDSSNSSRNFGRFDSFDEADPFGSTGPF 432 DS S DS+ E+ S S TS +S+ DSSNSS DS D G + Sbjct: 554 DSSDSSDSSDSSETSDSSDSSDTSDSSDSSDSSDSSNSSDTSDSSDSSDGDSSDGDSSDS 613 Query: 431 KASGARS 411 +S + S Sbjct: 614 DSSDSDS 620
>COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 1000 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 15/89 (16%) Frame = -2 Query: 403 NSDIHLWNYEDLSLERRW---------------KLY*TTGSFVDTGFGLLDGSTIQRIHF 269 N ++H+WNYE +L + + K + TGS D + + +T++R+H Sbjct: 36 NGNVHIWNYETQTLVKSFEVCDVPVRAAKFVPRKSWVVTGS-DDMHIRVFNYNTLERVHQ 94 Query: 268 FGWQLTSVRPVCIFPVLHPHVQSGHFLIV 182 F +R + + P L + S ++V Sbjct: 95 FEAHSDYLRSLVVHPTLPYVISSSDDMLV 123
>MK13_PANTR (Q9N272) Mitogen-activated protein kinase 13 (EC 2.7.11.24)| (Stress-activated protein kinase 4) Length = 365 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +1 Query: 463 SSKESNRPKFLELFDESNPAALSPLELVTESNLEKRLSCGTALS 594 S ++ R F +LF ++P A LE + E +++KRL+ AL+ Sbjct: 261 SLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 304
>MK13_HUMAN (O15264) Mitogen-activated protein kinase 13 (EC 2.7.11.24)| (Stress-activated protein kinase 4) (Mitogen-activated protein kinase p38 delta) (MAP kinase p38 delta) Length = 365 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +1 Query: 463 SSKESNRPKFLELFDESNPAALSPLELVTESNLEKRLSCGTALS 594 S ++ R F +LF ++P A LE + E +++KRL+ AL+ Sbjct: 261 SLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 304
>DCP1_ARATH (Q9SJF3) mRNA decapping enzyme-like protein (EC 3.-.-.-) (DCP1| homolog) Length = 367 Score = 30.0 bits (66), Expect = 5.7 Identities = 17/85 (20%), Positives = 35/85 (41%) Frame = +1 Query: 259 ANQKNESVVLYFRRATQTLYRQMNQXXXXXXXXXQETNPHNSTNEYQNLGGDRAPDALKG 438 A+Q+ + Y +R + + N+ Q+ +S +E++ L + G Sbjct: 108 ASQEVNGIWFYNKRECEEVATLFNRILSAYSKVNQKPKASSSKSEFEELEAKPTMAVMDG 167 Query: 439 PVEPKGSASSKESNRPKFLELFDES 513 P+EP +A + P F+ F + Sbjct: 168 PLEPSSTARDAPDD-PAFVNFFSST 191
>ALG6_HUMAN (Q9Y672) Dolichyl pyrophosphate Man9GlcNAc2| alpha-1,3-glucosyltransferase (EC 2.4.1.-) (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase) Length = 507 Score = 29.3 bits (64), Expect = 9.7 Identities = 23/73 (31%), Positives = 34/73 (46%) Frame = -2 Query: 286 IQRIHFFGWQLTSVRPVCIFPVLHPHVQSGHFLIVTCKVS*DFSLFIVACIFETTAYSSC 107 IQ I F + S+ P CI +L P + F +V+C +S F LF F+ S Sbjct: 296 IQLIMSFCFTFLSLLPACIKLILQPSSKGFKFTLVSCALS--FFLF----SFQVHEKSIL 349 Query: 106 VCAVPVSFFLYNI 68 + ++PV L I Sbjct: 350 LVSLPVCLVLSEI 362
>DNJB5_MOUSE (O89114) DnaJ homolog subfamily B member 5 (Heat shock protein| Hsp40-3) (Heat shock protein cognate 40) (Hsc40) Length = 348 Score = 29.3 bits (64), Expect = 9.7 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Frame = -1 Query: 515 FDSSNSSRNFGRFDSFD-----EADPFGSTGPFKASGARSPPK 402 F SS S+R F FD D + DPFG+ G F +G P+ Sbjct: 112 FASSRSTRPFSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPR 154
>DNJB5_HUMAN (O75953) DnaJ homolog subfamily B member 5 (Heat shock protein| Hsp40-3) (Heat shock protein cognate 40) (Hsc40) (Hsp40-2) Length = 348 Score = 29.3 bits (64), Expect = 9.7 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Frame = -1 Query: 515 FDSSNSSRNFGRFDSFD-----EADPFGSTGPFKASGARSPPK 402 F SS S+R F FD D + DPFG+ G F +G P+ Sbjct: 112 FASSRSTRPFSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPR 154 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,668,974 Number of Sequences: 219361 Number of extensions: 2034958 Number of successful extensions: 5921 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5561 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5907 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
