ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31n11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YN53_YEAST (P42842) Hypothetical 102.3 kDa protein in DAL82-RFA2... 33 0.52
2ATM_ASPOR (Q2U639) Serine/threonine-protein kinase tel1 (EC 2.7.... 31 2.6
3TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repe... 31 3.4
4MAST1_RAT (Q810W7) Microtubule-associated serine/threonine-prote... 31 3.4
5MAST1_HUMAN (Q9Y2H9) Microtubule-associated serine/threonine-pro... 31 3.4
6SEC_ARATH (Q9M8Y0) Probable UDP-N-acetylglucosamine--peptide N-a... 30 7.6
7TTC5_HUMAN (Q8N0Z6) Tetratricopeptide repeat protein 5 (TPR repe... 29 9.9

>YN53_YEAST (P42842) Hypothetical 102.3 kDa protein in DAL82-RFA2 intergenic|
           region
          Length = 904

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 564 TWEILATAYLKDNQLSEALSCLEKATAVKSASKWR 460
           +W  L+ AY K ++L EA SCL++A +  +   W+
Sbjct: 673 SWSNLSAAYTKMDKLKEAYSCLKRAISCDAQKNWK 707



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>ATM_ASPOR (Q2U639) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase tel1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2925

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -1

Query: 600 DFVEKGGNPKPNTWEILATAYLKDNQ----LSEALSCLEKATAVKSASKWRPRPTNVETL 433
           DF+  GG P P+      TA  K  +    +SEA+ C++  TA  +A    P    +  L
Sbjct: 188 DFLGTGGTPTPSRSMPTLTAREKPKRDKGAISEAVVCIQLLTASVNAPVQEPAAKILHGL 247

Query: 432 LAYFKEKNDTES 397
           + Y K  + T S
Sbjct: 248 VGYVKSSHITGS 259



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>TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repeat protein 3)|
           (TPR repeat protein D)
          Length = 2025

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +3

Query: 168 KKKYRAIPHELSSGGSSNIQITSK*LKCSRAIH*SYHWCPSTITCLQPPKHRCQSRT 338
           ++ +R I HE+++GG+ N+++  + LK            PS+    QPPKH+ + ++
Sbjct: 392 ERDFRKINHEMANGGNQNLKVADEALKVDDCDCHPEFSPPSS----QPPKHKGKQKS 444



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>MAST1_RAT (Q810W7) Microtubule-associated serine/threonine-protein kinase 1 (EC|
            2.7.11.1) (Syntrophin-associated serine/threonine-protein
            kinase)
          Length = 1570

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 27/88 (30%), Positives = 38/88 (43%)
 Frame = +3

Query: 177  YRAIPHELSSGGSSNIQITSK*LKCSRAIH*SYHWCPSTITCLQPPKHRCQSRTCTLRSQ 356
            YR+ P     G SS     +     S A   S+H  PST+  L P  HR Q R+   +S 
Sbjct: 1143 YRSTPDSAYLGASSQSSSPASSTPNSPASSASHHIRPSTLHGLSPKLHR-QYRSARCKSA 1201

Query: 357  HTLYF*VHSLTCRHSPCHSSP*NMPGES 440
              +   +  L    SP  +SP  +PG +
Sbjct: 1202 GNIP--LSPLAHTPSPTQASPPPLPGHT 1227



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>MAST1_HUMAN (Q9Y2H9) Microtubule-associated serine/threonine-protein kinase 1 (EC|
            2.7.11.1) (Syntrophin-associated serine/threonine-protein
            kinase)
          Length = 1570

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 27/88 (30%), Positives = 38/88 (43%)
 Frame = +3

Query: 177  YRAIPHELSSGGSSNIQITSK*LKCSRAIH*SYHWCPSTITCLQPPKHRCQSRTCTLRSQ 356
            YR+ P     G SS     +     S A   S+H  PST+  L P  HR Q R+   +S 
Sbjct: 1141 YRSTPDSAYLGASSQSSSPASSTPNSPASSASHHIRPSTLHGLSPKLHR-QYRSARCKSA 1199

Query: 357  HTLYF*VHSLTCRHSPCHSSP*NMPGES 440
              +   +  L    SP  +SP  +PG +
Sbjct: 1200 GNIP--LSPLAHTPSPTQASPPPLPGHT 1225



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>SEC_ARATH (Q9M8Y0) Probable UDP-N-acetylglucosamine--peptide|
           N-acetylglucosaminyltransferase SEC (EC 2.4.1.-)
           (Protein SECRET AGENT)
          Length = 977

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 567 NTWEILATAYLKDNQLSEALSCLEKATAV 481
           + W  LA+AY++  +LSEA  C ++A ++
Sbjct: 156 DAWSNLASAYMRKGRLSEATQCCQQALSL 184



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>TTC5_HUMAN (Q8N0Z6) Tetratricopeptide repeat protein 5 (TPR repeat protein 5)|
          Length = 440

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 26/98 (26%), Positives = 44/98 (44%)
 Frame = -1

Query: 594 VEKGGNPKPNTWEILATAYLKDNQLSEALSCLEKATAVKSASKWRPRPTNVETLLAYFKE 415
           V++  +  P+     AT +  +    EAL    +A A+  A  W P P   E  L  F  
Sbjct: 216 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSRAAALDPA--W-PEPRQREQQLLEF-- 270

Query: 414 KNDTESVDRLMSVLRSRGCAENEEYKSLIDTYALAVAG 301
                 +DRL S+L S+G  + ++ +S++ +   A  G
Sbjct: 271 ------LDRLTSLLESKGKVKTKKLQSMLGSLRPAHLG 302


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,320,490
Number of Sequences: 219361
Number of extensions: 1892724
Number of successful extensions: 4362
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4362
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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