ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31n10 |
|---|---|
| Clone Library Name | barley_pub |
>EXOC1_MOUSE (Q8R3S6) Exocyst complex component 1 (Exocyst complex component Sec3)| Length = 893 Score = 54.7 bits (130), Expect = 3e-07 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 4/172 (2%) Frame = -1 Query: 672 KIAQSDPKTA-DIVLIENYAAFQNSLYDLANVVPTLAKFYHQASESYEQACTRHISSLIY 496 K+A KT D+V++EN+ +L L + L +A + Y ++ + Sbjct: 714 KVANESQKTPRDVVMMENFHHIFATLSRLK--ISCLEAEKKEAKQKYTDHLQSYVIYSLG 771 Query: 495 LQFERLFQFSRKVD-ELTYTIAAEEIPFQLGLSKTDLRRVLKS-SLSGIDKSIGAMYRRL 322 E+L F V+ + I EE+ +QL +K +LR+V+K + K + +Y+++ Sbjct: 772 QPLEKLNHFFEGVEARVAQGIREEEVSYQLAFNKQELRKVIKEYPGKEVKKGLDNLYKKV 831 Query: 321 QKTLTSDE-LFPSLWDKCKKEFLDKYESFVQMVTRIYGNEPIMPVAEMRDTL 169 K L +E L +W + EF+ +Y+ F ++ R Y + ++D L Sbjct: 832 DKHLCEEENLLQVVWHSMQDEFIRQYKHFEGLIARCYPGSGVTMEFTIQDIL 883
>EXOC1_HUMAN (Q9NV70) Exocyst complex component 1 (Exocyst complex component Sec3)| Length = 893 Score = 54.7 bits (130), Expect = 3e-07 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 4/172 (2%) Frame = -1 Query: 672 KIAQSDPKTA-DIVLIENYAAFQNSLYDLANVVPTLAKFYHQASESYEQACTRHISSLIY 496 K+A KT D+V++EN+ +L L + L +A + Y ++ + Sbjct: 714 KVANESQKTPRDVVMMENFHHIFATLSRLK--ISCLEAEKKEAKQKYTDHLQSYVIYSLG 771 Query: 495 LQFERLFQFSRKVD-ELTYTIAAEEIPFQLGLSKTDLRRVLKS-SLSGIDKSIGAMYRRL 322 E+L F V+ + I EE+ +QL +K +LR+V+K + K + +Y+++ Sbjct: 772 QPLEKLNHFFEGVEARVAQGIREEEVSYQLAFNKQELRKVIKEYPGKEVKKGLDNLYKKV 831 Query: 321 QKTLTSDE-LFPSLWDKCKKEFLDKYESFVQMVTRIYGNEPIMPVAEMRDTL 169 K L +E L +W + EF+ +Y+ F ++ R Y + ++D L Sbjct: 832 DKHLCEEENLLQVVWHSMQDEFIRQYKHFEGLIARCYPGSGVTMEFTIQDIL 883
>PLSB_HUMAN (Q9HCL2) Glycerol-3-phosphate acyltransferase, mitochondrial| precursor (EC 2.3.1.15) (GPAT) Length = 828 Score = 35.0 bits (79), Expect = 0.21 Identities = 24/86 (27%), Positives = 38/86 (44%) Frame = -3 Query: 274 MQERVPGQVRELCPDGDADLRERAYNAGCRDEGHPR*LLDTIEYSAMYHFHSAVALSIFN 95 +QE + EL PDG A + +A N + + AM V L +FN Sbjct: 139 VQEAIAEVAAELNPDGSAQQQSKAVNKVKKKAKRILQEMVATVSPAMIRLTGWVLLKLFN 198 Query: 94 SFY*ILQIHRLSLGLVRMGSTCMFPV 17 SF+ +QIH+ L +V+ + P+ Sbjct: 199 SFFWNIQIHKGQLEMVKAATETNLPL 224
>PBX4_MOUSE (Q99NE9) Pre-B-cell leukemia transcription factor 4 (Homeobox| protein PBX4) Length = 378 Score = 32.3 bits (72), Expect = 1.3 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 9/133 (6%) Frame = -1 Query: 570 LAKFYHQASESYEQAC---TRHISSLIYLQFERLFQFSRKVDELTYTIAAEEIPFQLGLS 400 + + YH E YEQAC T H+++L+ Q R+++ + TI ++ Q L Sbjct: 139 IRQIYHSELEKYEQACREFTTHVTNLLREQSRVRPVSCREMEHMVNTIQSKFSAIQRQLK 198 Query: 399 KTDLRRVLKSSLSGIDKSIGAMYRRLQKTLTSDELF------PSLWDKCKKEFLDKYESF 238 ++ V+ +D Q T +E F P ++ K+E K Sbjct: 199 QSTCEAVMTLRSRFLDARRKRRNFSKQATDVLNEYFYSHLSNPYPSEETKEELARKGGIT 258 Query: 237 VQMVTRIYGNEPI 199 V V+ +GN+ I Sbjct: 259 VSQVSNWFGNKRI 271
>PLSB_RAT (P97564) Glycerol-3-phosphate acyltransferase, mitochondrial| precursor (EC 2.3.1.15) (GPAT) Length = 828 Score = 32.0 bits (71), Expect = 1.7 Identities = 23/86 (26%), Positives = 36/86 (41%) Frame = -3 Query: 274 MQERVPGQVRELCPDGDADLRERAYNAGCRDEGHPR*LLDTIEYSAMYHFHSAVALSIFN 95 +QE + EL PDG A + +A R + M V L +FN Sbjct: 139 VQEAIAEVAAELNPDGSAQQQSKAIQKVKRKARKILQEMVATVSPGMIRLTGWVLLKLFN 198 Query: 94 SFY*ILQIHRLSLGLVRMGSTCMFPV 17 SF+ +QIH+ L +V+ + P+ Sbjct: 199 SFFWNIQIHKGQLEMVKAATETNLPL 224
>PLSB_MOUSE (Q61586) Glycerol-3-phosphate acyltransferase, mitochondrial| precursor (EC 2.3.1.15) (GPAT) (P90) Length = 827 Score = 32.0 bits (71), Expect = 1.7 Identities = 23/86 (26%), Positives = 36/86 (41%) Frame = -3 Query: 274 MQERVPGQVRELCPDGDADLRERAYNAGCRDEGHPR*LLDTIEYSAMYHFHSAVALSIFN 95 +QE + EL PDG A + +A R + M V L +FN Sbjct: 139 VQEAIAEVAAELNPDGSAQQQSKAIQKVKRKARKILQEMVATVSPGMIRLTGWVLLKLFN 198 Query: 94 SFY*ILQIHRLSLGLVRMGSTCMFPV 17 SF+ +QIH+ L +V+ + P+ Sbjct: 199 SFFWNIQIHKGQLEMVKAATETNLPL 224
>PBX4_HUMAN (Q9BYU1) Pre-B-cell leukemia transcription factor 4 (Homeobox| protein PBX4) (Fragment) Length = 330 Score = 31.6 bits (70), Expect = 2.3 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 9/133 (6%) Frame = -1 Query: 570 LAKFYHQASESYEQAC---TRHISSLIYLQFERLFQFSRKVDELTYTIAAEEIPFQLGLS 400 + + YH E YEQAC T H+++L+ Q ++++ + I + Q+ L Sbjct: 90 IRQIYHSELEKYEQACREFTTHVTNLLQEQSRMRPVSPKEIERMVGAIHGKFSAIQMQLK 149 Query: 399 KTDLRRVLKSSLSGIDKSIGAMYRRLQKTLTSDELF------PSLWDKCKKEFLDKYESF 238 ++ V+ +D Q T +E F P ++ K+E K Sbjct: 150 QSTCEAVMTLRSRLLDARRKRRNFSKQATEVLNEYFYSHLNNPYPSEEAKEELARKGGLT 209 Query: 237 VQMVTRIYGNEPI 199 + V+ +GN+ I Sbjct: 210 ISQVSNWFGNKRI 222
>ERA_STRR6 (P0A3C4) GTP-binding protein era homolog| Length = 299 Score = 31.2 bits (69), Expect = 3.0 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 29/157 (18%) Frame = -1 Query: 633 LIENYAAFQNSLYDLANVVP-------TLAKFYHQASESYEQACTRHISSLIYLQFERLF 475 L+ F+N + D +VP +++ SE+ ++ S I ER F Sbjct: 131 LLSQIDDFRNQM-DFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPER-F 188 Query: 474 QFSRKVDELTYTIAAEEIPFQLGLSKTDLRR--------------VLKSSLSGID----- 352 S V E + EEIP + + ++R V + S GI Sbjct: 189 LVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETDKVHIRATIMVERDSQKGIIIGKGG 248 Query: 351 ---KSIGAMYRRLQKTLTSDELFPSLWDKCKKEFLDK 250 K IG+M RR + + D++F W K KK + DK Sbjct: 249 AMLKKIGSMARRDIELMLGDKVFLETWVKVKKNWRDK 285
>ERA_STRPN (P0A3C3) GTP-binding protein era homolog| Length = 299 Score = 31.2 bits (69), Expect = 3.0 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 29/157 (18%) Frame = -1 Query: 633 LIENYAAFQNSLYDLANVVP-------TLAKFYHQASESYEQACTRHISSLIYLQFERLF 475 L+ F+N + D +VP +++ SE+ ++ S I ER F Sbjct: 131 LLSQIDDFRNQM-DFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPER-F 188 Query: 474 QFSRKVDELTYTIAAEEIPFQLGLSKTDLRR--------------VLKSSLSGID----- 352 S V E + EEIP + + ++R V + S GI Sbjct: 189 LVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETDKVHIRATIMVERDSQKGIIIGKGG 248 Query: 351 ---KSIGAMYRRLQKTLTSDELFPSLWDKCKKEFLDK 250 K IG+M RR + + D++F W K KK + DK Sbjct: 249 AMLKKIGSMARRDIELMLGDKVFLETWVKVKKNWRDK 285
>MUKB_PASMU (Q9CN36) Chromosome partition protein mukB (Structural maintenance of| chromosome-related protein) Length = 1495 Score = 31.2 bits (69), Expect = 3.0 Identities = 30/149 (20%), Positives = 61/149 (40%) Frame = -1 Query: 663 QSDPKTADIVLIENYAAFQNSLYDLANVVPTLAKFYHQASESYEQACTRHISSLIYLQFE 484 Q D D + I Y A + L +AN + + + Y + YEQA IS +Q + Sbjct: 927 QLDIAEQDELFIRQYGATLSQLEPIANTLQSDPEHYERLKADYEQA----ISQQKQVQ-Q 981 Query: 483 RLFQFSRKVDELTYTIAAEEIPFQLGLSKTDLRRVLKSSLSGIDKSIGAMYRRLQKTLTS 304 RLF + + + E + + TDL L++ L + + +LQ+ Sbjct: 982 RLFALADVLQRKAHFAYEERVQTE----NTDLNEQLRAKLDSLQQQREVQKAQLQQKQQQ 1037 Query: 303 DELFPSLWDKCKKEFLDKYESFVQMVTRI 217 + ++ + + F +K + +++ + Sbjct: 1038 FTNYNRVYIELQTSFNNKMQMLQELLQEV 1066
>XISC_ANASP (Q44217) Excisase C (HupL element site-specific recombinase)| Length = 498 Score = 30.8 bits (68), Expect = 3.9 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = -1 Query: 357 IDKSIGAMYRRLQKTLTSDELFPSLWDKCKKEF----LDKYESFVQMVTRIYGNE 205 +DK Y+ QKT+TS FP+ K+ F L E+F +++ + GN+ Sbjct: 169 LDKFEEKYYQTRQKTITSQNTFPNYISVIKRNFPLTHLATKENFEEIINSVQGNK 223
>EXD_DROME (P40427) Homeobox protein extradenticle| Length = 376 Score = 30.8 bits (68), Expect = 3.9 Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 11/135 (8%) Frame = -1 Query: 570 LAKFYHQASESYEQAC---TRHISSLIYLQFERLFQFSRKVDELTYTIAAE--EIPFQLG 406 + + YHQ E YEQAC T H+ +L+ Q ++++ + I + I QL Sbjct: 162 IRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQMQLK 221 Query: 405 LSKTDLRRVLKSSLSGIDKSIGAMYRRLQKTLTS------DELFPSLWDKCKKEFLDKYE 244 S + +L+S + ++ + L +PS ++ K+E K Sbjct: 222 QSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPS--EEAKEELARKCG 279 Query: 243 SFVQMVTRIYGNEPI 199 V V+ +GN+ I Sbjct: 280 ITVSQVSNWFGNKRI 294
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 30.8 bits (68), Expect = 3.9 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = +2 Query: 251 LSRNSF--LHLSHSEGNNSSEVNVFCNLLYMAPIDLSIPDKLDFSTLLRSVFDNPSWKGI 424 L+ N+F LH SH +GN S+ ++P+ ++ PD +D T + D+ G Sbjct: 332 LNSNNFQILHSSHPQGNYSNS--------KLSPVHMNFPDPVDSGTQMGHFNDHVETNGF 383 Query: 425 SS 430 SS Sbjct: 384 SS 385
>ERA_STRGC (O24756) GTP-binding protein era homolog| Length = 299 Score = 30.4 bits (67), Expect = 5.1 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 22/98 (22%) Frame = -1 Query: 477 FQFSRKVDELTYTIAAEEIPFQLGLSKTDLRR--------------VLKSSLSGID---- 352 F S + E + EEIP + + ++R V + S GI Sbjct: 188 FLVSEMIREKVLMLTREEIPHSVAVVIDSMKRDEETDKVHIRATIMVERDSQKGIIIGKG 247 Query: 351 ----KSIGAMYRRLQKTLTSDELFPSLWDKCKKEFLDK 250 K IG+M RR + + D++F W K KK + DK Sbjct: 248 GSMLKKIGSMARRDIELMLGDKVFLETWVKVKKNWRDK 285
>Y691_CHLTR (O84697) Hypothetical UPF0111 protein CT_691| Length = 224 Score = 30.4 bits (67), Expect = 5.1 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 5/111 (4%) Frame = -1 Query: 615 AFQNSLYDLANVVPTLA-----KFYHQASESYEQACTRHISSLIYLQFERLFQFSRKVDE 451 + Q+SL D A + L +FY + E + + + + S FE + + R++D Sbjct: 88 SIQDSLADCAEDIAILLTVKELQFYPEFEELFFEFLQKTVQS-----FEAVAKTIREMDR 142 Query: 450 LTYTIAAEEIPFQLGLSKTDLRRVLKSSLSGIDKSIGAMYRRLQKTLTSDE 298 L + G ++ D RVL S +S ++ + R L K SD+ Sbjct: 143 L--------LESSFGGNRADKTRVLVSEVSNLEHECDLLQRELMKVFFSDD 185
>TACC3_HUMAN (Q9Y6A5) Transforming acidic coiled-coil-containing protein 3| (ERIC-1) Length = 838 Score = 30.4 bits (67), Expect = 5.1 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 6/55 (10%) Frame = -1 Query: 462 KVDELTYTIAAEEIPFQLGLSKTDLRRVLK------SSLSGIDKSIGAMYRRLQK 316 + +E+ Y A EE+ Q LSK ++++VLK + L+ ++KS +++R +K Sbjct: 678 RFEEVVYQ-AMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSMEKSFSDLFKRFEK 731
>YD01_SCHPO (O14286) Putative ABC transporter C15A10.01 in chromosome I| Length = 693 Score = 30.4 bits (67), Expect = 5.1 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Frame = -1 Query: 666 AQSDPKTADIVLIENYAA---FQNSLYDLANVVPTLAKFYHQASESYEQACTRHISSLIY 496 A S A I + NY A F N Y+++ Y + +YE+A + SSL + Sbjct: 298 ADSKASAAAIESLINYEAVKTFNNESYEMSR--------YEKHLSAYEKANVKVASSLAF 349 Query: 495 LQFERLFQFSRKVDELTYTIAAEEIPFQLGLSKTDLRRVLKSSLSGIDKSIGAMYRRLQK 316 L + FS + + Y + L + + L LS +G++YR +++ Sbjct: 350 LNSGQAIIFSTALTLMMYMGCRGIVTSNLTVGDLVMINQLVFQLSIPLNFLGSVYREMRQ 409 Query: 315 TLTSDELFPSL 283 T E SL Sbjct: 410 AFTDMEQLFSL 420
>PBX2_MOUSE (O35984) Pre-B-cell leukemia transcription factor 2 (Homeobox| protein PBX2) Length = 430 Score = 30.0 bits (66), Expect = 6.6 Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 9/141 (6%) Frame = -1 Query: 594 DLANVVPTLAKFYHQASESYEQAC---TRHISSLIYLQFERLFQFSRKVDELTYTIAAEE 424 D + + + YH E YEQAC T H+ +L+ Q ++++ + I + Sbjct: 160 DYRSKLAQIRHIYHSELEKYEQACNEFTTHVMNLLREQSRTRPVAPKEMERMVSIIHRKF 219 Query: 423 IPFQLGLSKTDLRRVLKSSLSGIDKSIGAMYRRLQKTLTSDELF------PSLWDKCKKE 262 Q+ L ++ V+ +D Q T +E F P ++ K+E Sbjct: 220 SAIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEE 279 Query: 261 FLDKYESFVQMVTRIYGNEPI 199 K V V+ +GN+ I Sbjct: 280 LAKKCGITVSQVSNWFGNKRI 300
>PBX2_HUMAN (P40425) Pre-B-cell leukemia transcription factor 2 (Homeobox| protein PBX2) (Protein G17) Length = 430 Score = 30.0 bits (66), Expect = 6.6 Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 9/141 (6%) Frame = -1 Query: 594 DLANVVPTLAKFYHQASESYEQAC---TRHISSLIYLQFERLFQFSRKVDELTYTIAAEE 424 D + + + YH E YEQAC T H+ +L+ Q ++++ + I + Sbjct: 160 DYRSKLAQIRHIYHSELEKYEQACNEFTTHVMNLLREQSRTRPVAPKEMERMVSIIHRKF 219 Query: 423 IPFQLGLSKTDLRRVLKSSLSGIDKSIGAMYRRLQKTLTSDELF------PSLWDKCKKE 262 Q+ L ++ V+ +D Q T +E F P ++ K+E Sbjct: 220 SAIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEE 279 Query: 261 FLDKYESFVQMVTRIYGNEPI 199 K V V+ +GN+ I Sbjct: 280 LAKKCGITVSQVSNWFGNKRI 300
>PBX1_MOUSE (P41778) Pre-B-cell leukemia transcription factor 1 (Homeobox| protein PBX1) Length = 430 Score = 30.0 bits (66), Expect = 6.6 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 9/133 (6%) Frame = -1 Query: 570 LAKFYHQASESYEQAC---TRHISSLIYLQFERLFQFSRKVDELTYTIAAEEIPFQLGLS 400 + + YH E YEQAC T H+ +L+ Q ++++ + I + Q+ L Sbjct: 157 IRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVSIIHRKFSSIQMQLK 216 Query: 399 KTDLRRVLKSSLSGIDKSIGAMYRRLQKTLTSDELF------PSLWDKCKKEFLDKYESF 238 ++ V+ +D Q T +E F P ++ K+E K Sbjct: 217 QSTCEAVMILRSRFLDARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT 276 Query: 237 VQMVTRIYGNEPI 199 V V+ +GN+ I Sbjct: 277 VSQVSNWFGNKRI 289
>PBX1_HUMAN (P40424) Pre-B-cell leukemia transcription factor 1 (Homeobox| protein PBX1) (Homeobox protein PRL) Length = 430 Score = 30.0 bits (66), Expect = 6.6 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 9/133 (6%) Frame = -1 Query: 570 LAKFYHQASESYEQAC---TRHISSLIYLQFERLFQFSRKVDELTYTIAAEEIPFQLGLS 400 + + YH E YEQAC T H+ +L+ Q ++++ + I + Q+ L Sbjct: 157 IRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVSIIHRKFSSIQMQLK 216 Query: 399 KTDLRRVLKSSLSGIDKSIGAMYRRLQKTLTSDELF------PSLWDKCKKEFLDKYESF 238 ++ V+ +D Q T +E F P ++ K+E K Sbjct: 217 QSTCEAVMILRSRFLDARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT 276 Query: 237 VQMVTRIYGNEPI 199 V V+ +GN+ I Sbjct: 277 VSQVSNWFGNKRI 289
>PBX3_MOUSE (O35317) Pre-B-cell leukemia transcription factor 3 (Homeobox| protein PBX3) Length = 434 Score = 30.0 bits (66), Expect = 6.6 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 9/133 (6%) Frame = -1 Query: 570 LAKFYHQASESYEQAC---TRHISSLIYLQFERLFQFSRKVDELTYTIAAEEIPFQLGLS 400 + + YH E YEQAC T H+ +L+ Q ++++ + I + Q+ L Sbjct: 159 IRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVGIIHRKFSSIQMQLK 218 Query: 399 KTDLRRVLKSSLSGIDKSIGAMYRRLQKTLTSDELF------PSLWDKCKKEFLDKYESF 238 ++ V+ +D Q T +E F P ++ K+E K Sbjct: 219 QSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSIT 278 Query: 237 VQMVTRIYGNEPI 199 V V+ +GN+ I Sbjct: 279 VSQVSNWFGNKRI 291
>PBX3_HUMAN (P40426) Pre-B-cell leukemia transcription factor 3 (Homeobox| protein PBX3) Length = 434 Score = 30.0 bits (66), Expect = 6.6 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 9/133 (6%) Frame = -1 Query: 570 LAKFYHQASESYEQAC---TRHISSLIYLQFERLFQFSRKVDELTYTIAAEEIPFQLGLS 400 + + YH E YEQAC T H+ +L+ Q ++++ + I + Q+ L Sbjct: 159 IRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVGIIHRKFSSIQMQLK 218 Query: 399 KTDLRRVLKSSLSGIDKSIGAMYRRLQKTLTSDELF------PSLWDKCKKEFLDKYESF 238 ++ V+ +D Q T +E F P ++ K+E K Sbjct: 219 QSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSIT 278 Query: 237 VQMVTRIYGNEPI 199 V V+ +GN+ I Sbjct: 279 VSQVSNWFGNKRI 291
>MATK_STAER (Q8MEX5) Maturase K (Intron maturase)| Length = 503 Score = 29.6 bits (65), Expect = 8.7 Identities = 25/78 (32%), Positives = 33/78 (42%) Frame = -1 Query: 669 IAQSDPKTADIVLIENYAAFQNSLYDLANVVPTLAKFYHQASESYEQACTRHISSLIYLQ 490 IA + K + L YA SL +VP +FYH S SYE R + Y + Sbjct: 199 IASKEKKRLSLFLWNYYAYECESL-----LVPLWKRFYHSRSLSYESFIER---TPFYRK 250 Query: 489 FERLFQFSRKVDELTYTI 436 E + FS K L +I Sbjct: 251 IEHIDIFSHKYKHLKKSI 268
>RAD50_AERPE (Q9YFZ1) DNA double-strand break repair rad50 ATPase| Length = 919 Score = 29.6 bits (65), Expect = 8.7 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Frame = -1 Query: 468 SRKVDELTYTIAAEEIPFQLGL----SKTDLRRVLKSSLSGIDKSIGAMYRRLQK 316 S+K++ + + AE++ +LG+ S DL + +L G+DK + A+ RRL++ Sbjct: 613 SKKLERMLVS-KAEDLATRLGITAYRSLDDLLEKAREALEGVDKELSAIERRLEE 666 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,057,919 Number of Sequences: 219361 Number of extensions: 1926164 Number of successful extensions: 5189 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 5048 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5185 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
