ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags32c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AOC4_ARATH (Q93ZC5) Allene oxide cyclase 4, chloroplast precurso... 121 2e-56
2AOC3_ARATH (Q9LS01) Allene oxide cyclase 3, chloroplast precurso... 123 6e-56
3AOC1_ARATH (Q9LS03) Allene oxide cyclase 1, chloroplast precurso... 115 6e-53
4AOC2_ARATH (Q9LS02) Allene oxide cyclase 2, chloroplast precurso... 114 6e-52
5ADAS_HUMAN (O00116) Alkyldihydroxyacetonephosphate synthase, per... 32 2.3
6CTX80_EUPOC (Q9N9X3) Ciliary WD repeat-containing protein ctxp80 30 8.7
7PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A me... 30 8.7

>AOC4_ARATH (Q93ZC5) Allene oxide cyclase 4, chloroplast precursor (EC|
           5.3.99.6)
          Length = 254

 Score =  121 bits (303), Expect(2) = 2e-56
 Identities = 56/82 (68%), Positives = 65/82 (79%)
 Frame = -3

Query: 673 SKVQELHVYELNERDRESPAYLRLSANQSQNALGDLVPFTNKVYNGSLDKRIGITAGICI 494
           +K+QEL+VYE NE DR SPA L+L     Q  LGDLVPFTNK+Y G L KRIGITAG+C+
Sbjct: 79  TKIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCV 138

Query: 493 LIQHVPERNGDRYEAIYSMYFG 428
           LIQHVPE+ GDR+EA YS YFG
Sbjct: 139 LIQHVPEKKGDRFEASYSFYFG 160



 Score =  118 bits (295), Expect(2) = 2e-56
 Identities = 57/95 (60%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
 Frame = -1

Query: 429 GDYGHISLQGPYLTYEESYLAVTGGSGVFEGVYGQVKLNQIVFPFKIFYTFYLKGI-PDL 253
           GDYGHIS+QGPYLTYE+++LA+TGGSGVFEG YGQVKL Q+V+P K+FYTFYLKG+  DL
Sbjct: 160 GDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADL 219

Query: 252 PKELLCXXXXXXXXXXXXPAAKATEPHACLNNFTD 148
           P EL                A+AT+P A + NFT+
Sbjct: 220 PVELTGKHVEPSKEVKPAAEAQATQPGATIANFTN 254



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>AOC3_ARATH (Q9LS01) Allene oxide cyclase 3, chloroplast precursor (EC|
           5.3.99.6)
          Length = 258

 Score =  123 bits (308), Expect(2) = 6e-56
 Identities = 56/82 (68%), Positives = 68/82 (82%)
 Frame = -3

Query: 673 SKVQELHVYELNERDRESPAYLRLSANQSQNALGDLVPFTNKVYNGSLDKRIGITAGICI 494
           SK+QEL+VYELNE DR SPA L+L    ++  LGDLVPFTNK+Y G L KR+GITAG+C+
Sbjct: 83  SKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCV 142

Query: 493 LIQHVPERNGDRYEAIYSMYFG 428
           LIQHVPE++GDR+EA YS YFG
Sbjct: 143 LIQHVPEKSGDRFEASYSFYFG 164



 Score =  114 bits (286), Expect(2) = 6e-56
 Identities = 56/95 (58%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
 Frame = -1

Query: 429 GDYGHISLQGPYLTYEESYLAVTGGSGVFEGVYGQVKLNQIVFPFKIFYTFYLKGIP-DL 253
           GDYGH+S+QG YLTYE+++LAVTGGSG+FEG YGQVKL Q+V+P K+FYTFYLKG+  DL
Sbjct: 164 GDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDL 223

Query: 252 PKELLCXXXXXXXXXXXXPAAKATEPHACLNNFTD 148
           P EL              P AKA EP   ++NFT+
Sbjct: 224 PLELTGTAVTPSKDVKPAPEAKAMEPSGVISNFTN 258



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>AOC1_ARATH (Q9LS03) Allene oxide cyclase 1, chloroplast precursor (EC|
           5.3.99.6) (Early-responsive to dehydration 12 protein)
          Length = 254

 Score =  115 bits (287), Expect(2) = 6e-53
 Identities = 55/95 (57%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
 Frame = -1

Query: 429 GDYGHISLQGPYLTYEESYLAVTGGSGVFEGVYGQVKLNQIVFPFKIFYTFYLKGIP-DL 253
           GDYGH+S+QGPYLTYE+S+LA+TGG+G+FEG YGQVKL Q+V+P K+FYTFYLKG+  DL
Sbjct: 160 GDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDL 219

Query: 252 PKELLCXXXXXXXXXXXXPAAKATEPHACLNNFTD 148
           P EL+             P AKA +P   ++NFT+
Sbjct: 220 PLELIGTPVPPSKDVEPAPEAKALKPSGVVSNFTN 254



 Score =  112 bits (281), Expect(2) = 6e-53
 Identities = 53/82 (64%), Positives = 66/82 (80%)
 Frame = -3

Query: 673 SKVQELHVYELNERDRESPAYLRLSANQSQNALGDLVPFTNKVYNGSLDKRIGITAGICI 494
           SKVQEL VYE+N+ DR SP  L+ +A   +  LGDLVPFTNK+Y G L KR+GITAG+C+
Sbjct: 80  SKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 138

Query: 493 LIQHVPERNGDRYEAIYSMYFG 428
           +I+HVPE+NGDR+EA YS YFG
Sbjct: 139 VIEHVPEKNGDRFEATYSFYFG 160



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>AOC2_ARATH (Q9LS02) Allene oxide cyclase 2, chloroplast precursor (EC|
           5.3.99.6)
          Length = 253

 Score =  114 bits (286), Expect(2) = 6e-52
 Identities = 55/95 (57%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
 Frame = -1

Query: 429 GDYGHISLQGPYLTYEESYLAVTGGSGVFEGVYGQVKLNQIVFPFKIFYTFYLKGIP-DL 253
           GDYGH+S+QGPYLTYE+S+LA+TGG+G+FEG YGQVKL Q+V+P K+FYTFYLKG+  DL
Sbjct: 159 GDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDL 218

Query: 252 PKELLCXXXXXXXXXXXXPAAKATEPHACLNNFTD 148
           P EL              P AKA EP   ++N+T+
Sbjct: 219 PLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 253



 Score =  109 bits (273), Expect(2) = 6e-52
 Identities = 52/82 (63%), Positives = 64/82 (78%)
 Frame = -3

Query: 673 SKVQELHVYELNERDRESPAYLRLSANQSQNALGDLVPFTNKVYNGSLDKRIGITAGICI 494
           SKVQEL VYE+NE DR SP  L+ +A      LGDLVPFTNK+Y G L KR+GITAG+C+
Sbjct: 79  SKVQELSVYEINELDRHSPKILK-NAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 137

Query: 493 LIQHVPERNGDRYEAIYSMYFG 428
           +I+HVPE+ G+R+EA YS YFG
Sbjct: 138 VIEHVPEKKGERFEATYSFYFG 159



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>ADAS_HUMAN (O00116) Alkyldihydroxyacetonephosphate synthase, peroxisomal|
           precursor (EC 2.5.1.26) (Alkyl-DHAP synthase)
           (Alkylglycerone-phosphate synthase) (Aging-associated
           protein 5)
          Length = 658

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 524 ADRDHGGDLHPDPARAGAQRRPLRGHLQHVLRATTATSACR 402
           ADRD      PDP RAG + R L GHL    R   +T+ C+
Sbjct: 23  ADRDRD----PDPDRAGRRLRVLSGHLLGRPREALSTNECK 59



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>CTX80_EUPOC (Q9N9X3) Ciliary WD repeat-containing protein ctxp80|
          Length = 716

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -2

Query: 491 DPARAGAQRRPLRGHLQHVLR 429
           +PARAGA    LRGH +HV+R
Sbjct: 670 NPARAGATPVSLRGHSEHVVR 690



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>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell|
           death-associated gene 51 protein) (Apoptosis-associated
           nuclear protein) (Proline- and histidine-rich protein)
           (Proline- and glutamine-rich protein) (PQ-rich protein)
          Length = 259

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
 Frame = -3

Query: 322 QAQPDRLPLQDLLHFLPQGHPGPAKGAALHARP---------AFPHRRANARRQGHRATR 170
           Q QP   P    LH  P  HP P      H  P           PH + +++  GHR  R
Sbjct: 194 QPQPQPKPQPQQLHPYPHPHPHPHSHPHSHPHPHPHPHPHQIPHPHPQPHSQPHGHRLLR 253


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,326,081
Number of Sequences: 219361
Number of extensions: 1085230
Number of successful extensions: 3198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3194
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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