ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31n04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 4e-64
2dbj|AK068419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 4e-64
3dbj|AK067065.1| Oryza sativa (japonica cultivar-group) cDNA clon... 246 9e-62
4gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome... 228 2e-56
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 228 2e-56
6gb|BT013663.1| Lycopersicon esculentum clone 132482R, mRNA sequence 52 0.003
7ref|XM_656420.1| Aspergillus nidulans FGSC A4 hypothetical prote... 48 0.042
8emb|X52384.1|ZMPK1 Maize mRNA for putative protein kinase 46 0.16
9emb|X67733.1|ZMPK1A Z.mays PK1 gene for receptor-like protein ki... 46 0.16
10ref|NM_001031480.1| Gallus gallus similar to DYRK2 protein (LOC4... 46 0.16
11emb|AJ720691.1| Gallus gallus mRNA for hypothetical protein, clo... 46 0.16
12gb|AY111028.1| Zea mays CL1194_1 mRNA sequence 46 0.16
13gb|AY107823.1| Zea mays PCO143563 mRNA sequence 46 0.16
14ref|NM_100350.2| Arabidopsis thaliana ATP binding / protein kina... 44 0.65
15ref|XM_679870.1| PREDICTED: Danio rerio zgc:110610 (zgc:110610),... 44 0.65
16ref|XM_680062.1| PREDICTED: Danio rerio similar to Phosphorylase... 44 0.65
17gb|BC095333.1| Danio rerio zgc:110610, mRNA (cDNA clone MGC:1106... 44 0.65
18gb|AC079402.5| Homo sapiens BAC clone RP11-597E15 from 2, comple... 44 0.65
19dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 44 0.65
20emb|CR388166.7| Zebrafish DNA sequence from clone DKEY-17E16 in ... 44 0.65
21gb|AC002376.1|T1G11 Sequence of BAC T1G11 from Arabidopsis thali... 44 0.65
22ref|XM_641953.1| Dictyostelium discoideum hypothetical protein (... 42 2.6
23gb|AY766186.1| Uncultured murine large bowel bacterium BAC 54B, ... 42 2.6 
>dbj|AK100493.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098L24, full
            insert sequence
          Length = 2575

 Score =  254 bits (128), Expect = 4e-64
 Identities = 272/320 (85%)
 Strand = Plus / Minus

                                                                        
Query: 379  cagctagaaggaacaatcggtctcaagttcttattaacaactgcataagctgcttggagc 438
            ||||| ||||||||||  ||||| ||||||||||||||||||||| ||||||| || |  
Sbjct: 2193 cagcttgaaggaacaactggtcttaagttcttattaacaactgcaaaagctgcctgcaat 2134

                                                                        
Query: 439  ggagtcatctcttcatagggaatcgaaccactaactagttcccacaagacaaggccaaaa 498
            ||||||||||||||||| || ||||| |||||||  | ||||||||| || |||||||||
Sbjct: 2133 ggagtcatctcttcataagggatcgagccactaaacaattcccacaatacgaggccaaaa 2074

                                                                        
Query: 499  ctataaacatcgactttcggaccatatggcttgcgcttacacatctccggcgccatccat 558
            || || || || || ||| |||||||||| ||||||||| ||||||| || |||||||||
Sbjct: 2073 ctgtagacgtcaaccttccgaccatatggtttgcgcttaaacatctctggtgccatccat 2014

                                                                        
Query: 559  ctatatgtgcctgggtcatcttccaacgtgttgcagtaaacgttttcgaaagctactcca 618
            || || || ||||||||||||||||| | ||||||||| || | |||  |||| ||||||
Sbjct: 2013 ctgtaagtacctgggtcatcttccaatgagttgcagtatacttcttcacaagccactcca 1954

                                                                        
Query: 619  aaatcaacgacctttgcacaacattctgcgtcgaacagaatgttctcaggtttcacgtca 678
            |||||||| |||||||||||||||||| | || ||||  ||||||||||||||||| |||
Sbjct: 1953 aaatcaacaacctttgcacaacattctccatcaaacaagatgttctcaggtttcacatca 1894

                                
Query: 679  cggtggattacgccttgcga 698
            || |||||||| | ||||||
Sbjct: 1893 cgatggattactctttgcga 1874
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>dbj|AK068419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153L22, full
            insert sequence
          Length = 3570

 Score =  254 bits (128), Expect = 4e-64
 Identities = 272/320 (85%)
 Strand = Plus / Minus

                                                                        
Query: 379  cagctagaaggaacaatcggtctcaagttcttattaacaactgcataagctgcttggagc 438
            ||||| ||||||||||  ||||| ||||||||||||||||||||| ||||||| || |  
Sbjct: 3169 cagcttgaaggaacaactggtcttaagttcttattaacaactgcaaaagctgcctgcaat 3110

                                                                        
Query: 439  ggagtcatctcttcatagggaatcgaaccactaactagttcccacaagacaaggccaaaa 498
            ||||||||||||||||| || ||||| |||||||  | ||||||||| || |||||||||
Sbjct: 3109 ggagtcatctcttcataagggatcgagccactaaacaattcccacaatacgaggccaaaa 3050

                                                                        
Query: 499  ctataaacatcgactttcggaccatatggcttgcgcttacacatctccggcgccatccat 558
            || || || || || ||| |||||||||| ||||||||| ||||||| || |||||||||
Sbjct: 3049 ctgtagacgtcaaccttccgaccatatggtttgcgcttatacatctctggtgccatccat 2990

                                                                        
Query: 559  ctatatgtgcctgggtcatcttccaacgtgttgcagtaaacgttttcgaaagctactcca 618
            || || || ||||||||||||||||| | ||||||||| || | |||  |||| ||||||
Sbjct: 2989 ctgtaagtacctgggtcatcttccaatgagttgcagtatacttcttcacaagccactcca 2930

                                                                        
Query: 619  aaatcaacgacctttgcacaacattctgcgtcgaacagaatgttctcaggtttcacgtca 678
            |||||||| |||||||||||||||||| | || ||||  ||||||||||||||||| |||
Sbjct: 2929 aaatcaacaacctttgcacaacattctccatcaaacaagatgttctcaggtttcacatca 2870

                                
Query: 679  cggtggattacgccttgcga 698
            || |||||||| | ||||||
Sbjct: 2869 cgatggattactctttgcga 2850
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>dbj|AK067065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091D22, full
            insert sequence
          Length = 2340

 Score =  246 bits (124), Expect = 9e-62
 Identities = 271/320 (84%)
 Strand = Plus / Minus

                                                                        
Query: 379  cagctagaaggaacaatcggtctcaagttcttattaacaactgcataagctgcttggagc 438
            ||||| ||||||||||  ||||| ||||||||||||||||||||| ||||||| || |  
Sbjct: 1903 cagcttgaaggaacaactggtcttaagttcttattaacaactgcaaaagctgcctgcaat 1844

                                                                        
Query: 439  ggagtcatctcttcatagggaatcgaaccactaactagttcccacaagacaaggccaaaa 498
            ||||||||||||||||| || ||||| |||||||  | ||||||||| || |||||||||
Sbjct: 1843 ggagtcatctcttcataagggatcgagccactaaacaattcccacaaaacgaggccaaaa 1784

                                                                        
Query: 499  ctataaacatcgactttcggaccatatggcttgcgcttacacatctccggcgccatccat 558
            || || || || || ||| |||||||||| ||||||||| ||||||| || |||||||||
Sbjct: 1783 ctgtagacgtcaaccttccgaccatatggtttgcgcttatacatctctggtgccatccat 1724

                                                                        
Query: 559  ctatatgtgcctgggtcatcttccaacgtgttgcagtaaacgttttcgaaagctactcca 618
            || || || ||||||||||||||||| | ||||||||| || | |||  |||| ||||||
Sbjct: 1723 ctgtaagtacctgggtcatcttccaatgagttgcagtatacttcttcacaagccactcca 1664

                                                                        
Query: 619  aaatcaacgacctttgcacaacattctgcgtcgaacagaatgttctcaggtttcacgtca 678
            |||||||| |||||||||||||||||| | || ||||  ||||||||||||||| | |||
Sbjct: 1663 aaatcaacaacctttgcacaacattctccatcaaacaagatgttctcaggtttcgcatca 1604

                                
Query: 679  cggtggattacgccttgcga 698
            || |||||||| | ||||||
Sbjct: 1603 cgatggattactctttgcga 1584
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>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04,
             complete sequence
          Length = 169073

 Score =  228 bits (115), Expect = 2e-56
 Identities = 247/291 (84%)
 Strand = Plus / Minus

                                                                         
Query: 408   cttattaacaactgcataagctgcttggagcggagtcatctcttcatagggaatcgaacc 467
             |||||||||||||||| ||||||| || |  ||||||||||||||||| || ||||| ||
Sbjct: 91040 cttattaacaactgcaaaagctgcctgcaatggagtcatctcttcataagggatcgagcc 90981

                                                                         
Query: 468   actaactagttcccacaagacaaggccaaaactataaacatcgactttcggaccatatgg 527
             |||||  | ||||||||| || ||||||||||| || || || || ||| ||||||||||
Sbjct: 90980 actaaacaattcccacaatacgaggccaaaactgtagacgtcaaccttccgaccatatgg 90921

                                                                         
Query: 528   cttgcgcttacacatctccggcgccatccatctatatgtgcctgggtcatcttccaacgt 587
              ||||||||| ||||||| || ||||||||||| || || ||||||||||||||||| | 
Sbjct: 90920 tttgcgcttatacatctctggtgccatccatctgtaagtacctgggtcatcttccaatga 90861

                                                                         
Query: 588   gttgcagtaaacgttttcgaaagctactccaaaatcaacgacctttgcacaacattctgc 647
             ||||||||| || | |||  |||| |||||||||||||| |||||||||||||||||| |
Sbjct: 90860 gttgcagtatacttcttcacaagccactccaaaatcaacaacctttgcacaacattctcc 90801

                                                                
Query: 648   gtcgaacagaatgttctcaggtttcacgtcacggtggattacgccttgcga 698
              || ||||  ||||||||||||||||| ||||| |||||||| | ||||||
Sbjct: 90800 atcaaacaagatgttctcaggtttcacatcacgatggattactctttgcga 90750
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  228 bits (115), Expect = 2e-56
 Identities = 247/291 (84%)
 Strand = Plus / Minus

                                                                            
Query: 408      cttattaacaactgcataagctgcttggagcggagtcatctcttcatagggaatcgaacc 467
                |||||||||||||||| ||||||| || |  ||||||||||||||||| || ||||| ||
Sbjct: 25574633 cttattaacaactgcaaaagctgcctgcaatggagtcatctcttcataagggatcgagcc 25574574

                                                                            
Query: 468      actaactagttcccacaagacaaggccaaaactataaacatcgactttcggaccatatgg 527
                |||||  | ||||||||| || ||||||||||| || || || || ||| ||||||||||
Sbjct: 25574573 actaaacaattcccacaatacgaggccaaaactgtagacgtcaaccttccgaccatatgg 25574514

                                                                            
Query: 528      cttgcgcttacacatctccggcgccatccatctatatgtgcctgggtcatcttccaacgt 587
                 ||||||||| ||||||| || ||||||||||| || || ||||||||||||||||| | 
Sbjct: 25574513 tttgcgcttatacatctctggtgccatccatctgtaagtacctgggtcatcttccaatga 25574454

                                                                            
Query: 588      gttgcagtaaacgttttcgaaagctactccaaaatcaacgacctttgcacaacattctgc 647
                ||||||||| || | |||  |||| |||||||||||||| |||||||||||||||||| |
Sbjct: 25574453 gttgcagtatacttcttcacaagccactccaaaatcaacaacctttgcacaacattctcc 25574394

                                                                   
Query: 648      gtcgaacagaatgttctcaggtttcacgtcacggtggattacgccttgcga 698
                 || ||||  ||||||||||||||||| ||||| |||||||| | ||||||
Sbjct: 25574393 atcaaacaagatgttctcaggtttcacatcacgatggattactctttgcga 25574343
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>gb|BT013663.1| Lycopersicon esculentum clone 132482R, mRNA sequence
          Length = 1868

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 478  tcccacaagacaaggccaaaactataaacatcgacttt 515
            |||||||  |||| ||||||||||||||||||||||||
Sbjct: 1204 tcccacagaacaatgccaaaactataaacatcgacttt 1167
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>ref|XM_656420.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3908.2), mRNA
          Length = 4113

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 655  agaatgttctcaggtttcacgtcacggtggat 686
            |||| ||| |||||||||||||||||||||||
Sbjct: 3005 agaaagttgtcaggtttcacgtcacggtggat 2974
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>emb|X52384.1|ZMPK1 Maize mRNA for putative protein kinase
          Length = 2693

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 652  aacagaatgttctcaggtttcacgtcacggtggat 686
            ||||| ||||||||||||||||| |||| ||||||
Sbjct: 2003 aacagtatgttctcaggtttcacatcacagtggat 1969
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>emb|X67733.1|ZMPK1A Z.mays PK1 gene for receptor-like protein kinase
          Length = 4487

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 652  aacagaatgttctcaggtttcacgtcacggtggat 686
            ||||| ||||||||||||||||| |||| ||||||
Sbjct: 3723 aacagtatgttctcaggtttcacatcacagtggat 3689
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>ref|NM_001031480.1| Gallus gallus similar to DYRK2 protein (LOC427864), mRNA
          Length = 2419

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 652  aacagaatgttctcaggtttcacgtcacggtggat 686
            |||||||||||||||||||| | ||||| ||||||
Sbjct: 1015 aacagaatgttctcaggtttaaggtcacagtggat 981
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>emb|AJ720691.1| Gallus gallus mRNA for hypothetical protein, clone 23i19
          Length = 2419

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 652  aacagaatgttctcaggtttcacgtcacggtggat 686
            |||||||||||||||||||| | ||||| ||||||
Sbjct: 1015 aacagaatgttctcaggtttaaggtcacagtggat 981
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>gb|AY111028.1| Zea mays CL1194_1 mRNA sequence
          Length = 2693

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 652 aacagaatgttctcaggtttcacgtcacggtggat 686
           ||||| ||||||||||||||||| |||| ||||||
Sbjct: 691 aacagtatgttctcaggtttcacatcacagtggat 725
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>gb|AY107823.1| Zea mays PCO143563 mRNA sequence
          Length = 598

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 256 gttccatctctatcgagagctgtcttgagattttcaagg 294
           ||||||||||| || ||| |||||||||| |||||||||
Sbjct: 320 gttccatctctttcaagaactgtcttgaggttttcaagg 282
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>ref|NM_100350.2| Arabidopsis thaliana ATP binding / protein kinase/ protein
            serine/threonine kinase/ protein-tyrosine kinase
            AT1G04700 mRNA, complete cds
          Length = 3395

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 340  gaccagcattgctccatcaact 361
            ||||||||||||||||||||||
Sbjct: 3038 gaccagcattgctccatcaact 3017
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>ref|XM_679870.1| PREDICTED: Danio rerio zgc:110610 (zgc:110610), mRNA
          Length = 1374

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 652 aacagaatgttctcaggtttcacgtcacggtgga 685
           |||||||||||||| ||||||| |||||| ||||
Sbjct: 662 aacagaatgttctctggtttcaggtcacgatgga 629
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>ref|XM_680062.1| PREDICTED: Danio rerio similar to Phosphorylase b kinase gamma
           catalytic chain, skeletal muscle isoform (Phosphorylase
           kinase gamma subunit 1) (LOC557082), mRNA
          Length = 1374

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 652 aacagaatgttctcaggtttcacgtcacggtgga 685
           |||||||||||||| ||||||| |||||| ||||
Sbjct: 662 aacagaatgttctctggtttcaggtcacgatgga 629
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>gb|BC095333.1| Danio rerio zgc:110610, mRNA (cDNA clone MGC:110610 IMAGE:7162634),
           complete cds
          Length = 2206

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 652 aacagaatgttctcaggtttcacgtcacggtgga 685
           |||||||||||||| ||||||| |||||| ||||
Sbjct: 702 aacagaatgttctctggtttcaggtcacgatgga 669
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>gb|AC079402.5| Homo sapiens BAC clone RP11-597E15 from 2, complete sequence
          Length = 86973

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 217   gcagcttcctggcagctggggg 238
             ||||||||||||||||||||||
Sbjct: 33398 gcagcttcctggcagctggggg 33419
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 55     gaaaaattgatttacagagtta 76
              ||||||||||||||||||||||
Sbjct: 480997 gaaaaattgatttacagagtta 480976
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>emb|CR388166.7| Zebrafish DNA sequence from clone DKEY-17E16 in linkage group 21,
              complete sequence
          Length = 220882

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 652    aacagaatgttctcaggtttcacgtcacggtgga 685
              |||||||||||||| ||||||| |||||| ||||
Sbjct: 149115 aacagaatgttctctggtttcaggtcacgatgga 149148
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>gb|AC002376.1|T1G11 Sequence of BAC T1G11 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 100079

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 340   gaccagcattgctccatcaact 361
             ||||||||||||||||||||||
Sbjct: 12520 gaccagcattgctccatcaact 12541
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>ref|XM_641953.1| Dictyostelium discoideum hypothetical protein (DDB0190111), partial
            mRNA
          Length = 3048

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 2    ttctgtaaagaaaagaaaagg 22
            |||||||||||||||||||||
Sbjct: 3018 ttctgtaaagaaaagaaaagg 3038
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>gb|AY766186.1| Uncultured murine large bowel bacterium BAC 54B, complete sequence
          Length = 39918

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 670   ttcacgtcacggtggattacg 690
             |||||||||||||||||||||
Sbjct: 14027 ttcacgtcacggtggattacg 14047


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,116,203
Number of Sequences: 3902068
Number of extensions: 7116203
Number of successful extensions: 286621
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 286499
Number of HSP's gapped (non-prelim): 122
length of query: 739
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 716
effective length of database: 17,143,297,704
effective search space: 12274601156064
effective search space used: 12274601156064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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