>gb|AY111911.1| Zea mays CL19970_1 mRNA sequence
          Length = 579

 Score =  337 bits (170), Expect = 3e-89
 Identities = 338/394 (85%)
 Strand = Plus / Plus

                                                                       
Query: 252 gctagctactcatctcctctgtatcagcaagcacaaactctgtgtacaggttcttcaatg 311
           ||||||| ||| ||||||||  ||||||||| |||||||||||||||| ||||||||| |
Sbjct: 167 gctagctgctcgtctcctctccatcagcaagtacaaactctgtgtacaagttcttcaacg 226

                                                                       
Query: 312 ctatcacaaccgtcataataagggggcccagtattgcaccctcgagagcattgggaaata 371
           |||| ||||||||||| |||||||| || | |||||||||||| || ||||||||||| |
Sbjct: 227 ctataacaaccgtcattataaggggacctaatattgcaccctccagtgcattgggaaaca 286

                                                                       
Query: 372 acgtcatgccaccaattatgcttaggccagtcagatacccattgtacccaggtatatcct 431
             |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct: 287 gtgtcatgccaccaattatgctgaggccggtgagatacccattgtacccaggtatatcct 346

                                                                       
Query: 432 cctgaatgactgtggttccataatccatgatcacaaggtgtatcactgttaccataaccg 491
           || |||||   || || ||||||||||||| ||  ||||||||||| |||||||  |  |
Sbjct: 347 ccagaatggtagttgtgccataatccatgagcatgaggtgtatcacagttaccaccagtg 406

                                                                       
Query: 492 cgagtacatatctcccttccgtcagcagctgcgctgcggcaaatatcgaggacagccatg 551
           | || ||||||||||||||| | || |||||| ||| |||||||||||||||||||||  
Sbjct: 407 caagaacatatctcccttccatgagaagctgccctgtggcaaatatcgaggacagccaaa 466

                                                                       
Query: 552 ctggtagtattgggaaaagtgcactgatgattgtaaacacagttgctgtgtacacaaaat 611
            ||| |||||||| | ||||||||| |||| |  || |||||||| ||||||||||||||
Sbjct: 467 atggaagtattggcacaagtgcacttatgaatccaagcacagttgatgtgtacacaaaat 526

                                             
Query: 612 gcaccttgaagaacttgagcaacagccatgtcag 645
           |||| ||||||||||||| ||| |||||||||||
Sbjct: 527 gcactttgaagaacttgaacaatagccatgtcag 560

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  321 bits (162), Expect = 2e-84
 Identities = 264/298 (88%)
 Strand = Plus / Minus

                                                                            
Query: 351      cctcgagagcattgggaaataacgtcatgccaccaattatgcttaggccagtcagatacc 410
                |||| ||||||||||| || || | |||||||||||||||||| |||||||| ||||| |
Sbjct: 10884745 cctccagagcattggggaacaatgccatgccaccaattatgctaaggccagtgagatatc 10884686

                                                                            
Query: 411      cattgtacccaggtatatcctcctgaatgactgtggttccataatccatgatcacaaggt 470
                |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |  || |
Sbjct: 10884685 cattgtacccgggtatatcctcctgaatgactgtagttccataatccatgattatgagat 10884626

                                                                            
Query: 471      gtatcactgttaccataaccgcgagtacatatctcccttccgtcagcagctgcgctgcgg 530
                | | |||||| |||| ||  ||||| ||||||||||||||| | ||||||||  ||||||
Sbjct: 10884625 gaaccactgtcaccacaatagcgagcacatatctcccttccatgagcagctgtcctgcgg 10884566

                                                                            
Query: 531      caaatatcgaggacagccatgctggtagtattgggaaaagtgcactgatgattgtaaaca 590
                ||||||||||||||| ||||| ||| |||||||| | ||||||||||||||||| |||||
Sbjct: 10884565 caaatatcgaggacaaccatggtgggagtattggcagaagtgcactgatgattgcaaaca 10884506

                                                                          
Query: 591      cagttgctgtgtacacaaaatgcaccttgaagaacttgagcaacagccatgtcaggca 648
                |||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 10884505 cagttgatgtgtacacaaaatgcaccttgaagagcttgaacaacagccatgtcaggca 10884448



 Score =  115 bits (58), Expect = 2e-22
 Identities = 82/90 (91%)
 Strand = Plus / Minus

                                                                            
Query: 264      tctcctctgtatcagcaagcacaaactctgtgtacaggttcttcaatgctatcacaaccg 323
                ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct: 10885655 tctcctctgaatcagcaagcacaaactctgtgtacaggttcttcaatgccatcaccactg 10885596

                                              
Query: 324      tcataataagggggcccagtattgcaccct 353
                |||| |||||||| || | |||||||||||
Sbjct: 10885595 tcattataaggggacctaatattgcaccct 10885566

>dbj|AP005413.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0055N24
          Length = 142702

 Score =  321 bits (162), Expect = 2e-84
 Identities = 264/298 (88%)
 Strand = Plus / Minus

                                                                          
Query: 351    cctcgagagcattgggaaataacgtcatgccaccaattatgcttaggccagtcagatacc 410
              |||| ||||||||||| || || | |||||||||||||||||| |||||||| ||||| |
Sbjct: 111111 cctccagagcattggggaacaatgccatgccaccaattatgctaaggccagtgagatatc 111052

                                                                          
Query: 411    cattgtacccaggtatatcctcctgaatgactgtggttccataatccatgatcacaaggt 470
              |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |  || |
Sbjct: 111051 cattgtacccgggtatatcctcctgaatgactgtagttccataatccatgattatgagat 110992

                                                                          
Query: 471    gtatcactgttaccataaccgcgagtacatatctcccttccgtcagcagctgcgctgcgg 530
              | | |||||| |||| ||  ||||| ||||||||||||||| | ||||||||  ||||||
Sbjct: 110991 gaaccactgtcaccacaatagcgagcacatatctcccttccatgagcagctgtcctgcgg 110932

                                                                          
Query: 531    caaatatcgaggacagccatgctggtagtattgggaaaagtgcactgatgattgtaaaca 590
              ||||||||||||||| ||||| ||| |||||||| | ||||||||||||||||| |||||
Sbjct: 110931 caaatatcgaggacaaccatggtgggagtattggcagaagtgcactgatgattgcaaaca 110872

                                                                        
Query: 591    cagttgctgtgtacacaaaatgcaccttgaagaacttgagcaacagccatgtcaggca 648
              |||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 110871 cagttgatgtgtacacaaaatgcaccttgaagagcttgaacaacagccatgtcaggca 110814



 Score =  115 bits (58), Expect = 2e-22
 Identities = 82/90 (91%)
 Strand = Plus / Minus

                                                                          
Query: 264    tctcctctgtatcagcaagcacaaactctgtgtacaggttcttcaatgctatcacaaccg 323
              ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct: 112021 tctcctctgaatcagcaagcacaaactctgtgtacaggttcttcaatgccatcaccactg 111962

                                            
Query: 324    tcataataagggggcccagtattgcaccct 353
              |||| |||||||| || | |||||||||||
Sbjct: 111961 tcattataaggggacctaatattgcaccct 111932

>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 567    aaagtgcactgatgattgtaaaca 590
              ||||||||||||||||||||||||
Sbjct: 222811 aaagtgcactgatgattgtaaaca 222788

>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 567    aaagtgcactgatgattgtaaaca 590
              ||||||||||||||||||||||||
Sbjct: 269584 aaagtgcactgatgattgtaaaca 269561

>gb|AC073318.8| Homo sapiens BAC clone RP11-266F12 from 7, complete sequence
          Length = 162460

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 447   ttccataatccatgatcacaag 468
             ||||||||||||||||||||||
Sbjct: 40517 ttccataatccatgatcacaag 40538

>emb|AL356285.9| Human DNA sequence from clone RP11-569O4 on chromosome 13 Contains the
             5' end of the XPO4 gene for likely ortholog of mouse
             exportin 4, a CCR4-NOT transcription complex, subunit 4
             (CNOT4) (NOT4, NOT4H, CLONE243) pseudogene, a
             heterogeneous nuclear ribonucleoprotein A1
             (HNRPA1)(HNRNPA1) pseudogene, a pseudogene similar to part
             of peptidylprolyl isomerase A (cyclophilin A) (PPIA), a
             Laminin receptor 1 (67kD, ribosomal protein
             SA)(LAMR1)(LRP, p40, RPSA, 37LRP, LAMBR) pseudogene, the
             3' end of the LATS2 gene for LATS, large tumor suppressor,
             homolog 2 (LATS (large tumor suppressor, Drosophila)
             homolog 2), two novel genes and three CpG islands,
             complete sequence
          Length = 183597

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 167   tggtacaaaggaaaagccaaca 188
             ||||||||||||||||||||||
Sbjct: 64340 tggtacaaaggaaaagccaaca 64361

>gb|AC123071.3| Mus musculus BAC clone RP23-70P8 from chromosome 13, complete sequence
          Length = 252384

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      tgataatactgtacaatttct 22
              |||||||||||||||||||||
Sbjct: 216548 tgataatactgtacaatttct 216568

>ref|XM_917520.2| PREDICTED: Mus musculus similar to Spectrin beta chain, brain 4
           (Spectrin, non-erythroid beta chain 4) (Beta-V spectrin)
           (BSPECV) (LOC640524), mRNA
          Length = 11049

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 285 caaactctgtgtacaggttct 305
           |||||||||||||||||||||
Sbjct: 394 caaactctgtgtacaggttct 374

>gb|AF296104.1|AF296104 Porcine teschovirus strain Vir 1627/89 polyprotein gene, complete cds
          Length = 7112

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 173  aaaggaaaagccaacatggaaatgcagag 201
            |||||| ||||||||||||||||| ||||
Sbjct: 5082 aaaggacaagccaacatggaaatggagag 5110

>gb|AC140679.4| Mus musculus BAC clone RP24-511M8 from 1, complete sequence
          Length = 176052

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 374   gtcatgccaccaattatgctt 394
             |||||||||||||||||||||
Sbjct: 61679 gtcatgccaccaattatgctt 61659

>gb|AC151054.2| Mus musculus BAC clone RP23-147K16 from 13, complete sequence
          Length = 220038

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     tgataatactgtacaatttct 22
             |||||||||||||||||||||
Sbjct: 93634 tgataatactgtacaatttct 93614

>emb|AL928575.7| Mouse DNA sequence from clone RP23-37A11 on chromosome 2, complete
              sequence
          Length = 167375

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 539    gaggacagccatgctggtagt 559
              |||||||||||||||||||||
Sbjct: 150227 gaggacagccatgctggtagt 150207

>emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chromosome 2, complete
              sequence
          Length = 194045

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 285    caaactctgtgtacaggttct 305
              |||||||||||||||||||||
Sbjct: 102661 caaactctgtgtacaggttct 102641

>emb|AL512292.5| Human DNA sequence from clone RP11-292O17 on chromosome 1 Contains a
             ribosomal protein L31 (RPL31) pseudogene, complete
             sequence
          Length = 135389

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   ccaggtatatcctcctgaat 438
             ||||||||||||||||||||
Sbjct: 55805 ccaggtatatcctcctgaat 55824

>emb|AL359733.15| Human DNA sequence from clone RP11-458C5 on chromosome 1 Contains the
             5' end of the gene for a novel protein (FLJ10052) and a
             CpG island, complete sequence
          Length = 75761

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 571   tgcactgatgattgtaaacacagt 594
             |||||| |||||||||||||||||
Sbjct: 13445 tgcactcatgattgtaaacacagt 13468

>emb|AL137839.6| Human DNA sequence from clone RP3-471C18 on chromosome 6 Contains the
            3' end of two novel genes, complete sequence
          Length = 108793

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    atactgtacaatttctgcat 26
            ||||||||||||||||||||
Sbjct: 4262 atactgtacaatttctgcat 4243

>ref|XM_778282.1| PREDICTED: Strongylocentrotus purpuratus similar to BTB (POZ) domain
            containing 2 (LOC578095), mRNA
          Length = 1413

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  tcatctcctctgtatcagca 280
            ||||||||||||||||||||
Sbjct: 1135 tcatctcctctgtatcagca 1116

>gb|AC125392.15| Pan troglodytes clone rp43-143k16, complete sequence
          Length = 163615

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   aagagggcaaaattacaagg 123
             ||||||||||||||||||||
Sbjct: 51328 aagagggcaaaattacaagg 51347

>gb|AC022017.8| Homo sapiens chromosome 10 clone RP11-210G22, complete sequence
          Length = 180165

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    ggcaaaattacaaggaggaa 128
              ||||||||||||||||||||
Sbjct: 166296 ggcaaaattacaaggaggaa 166277

>gb|AC083826.7| Homo sapiens BAC clone RP11-289C17 from 4, complete sequence
          Length = 129240

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   aagagggcaaaattacaagg 123
             ||||||||||||||||||||
Sbjct: 11700 aagagggcaaaattacaagg 11719

>gb|AC154596.2| Mus musculus BAC clone RP23-354C17 from chromosome 17, complete
             sequence
          Length = 208266

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   tagctactcatctcctctgt 273
             ||||||||||||||||||||
Sbjct: 21990 tagctactcatctcctctgt 21971

>gb|AF296112.1|AF296112 Porcine teschovirus strain Vir 3764/86 polyprotein gene, complete cds
          Length = 7015

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 173  aaaggaaaagccaacatggaaatg 196
            |||||| |||||||||||||||||
Sbjct: 4985 aaaggacaagccaacatggaaatg 5008

>gb|AF296103.1|AF296103 Porcine teschovirus strain Vir 1626/89 polyprotein gene, complete cds
          Length = 7112

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 174  aaggaaaagccaacatggaaatgcagag 201
            ||||| ||||||||||||||||| ||||
Sbjct: 5083 aaggacaagccaacatggaaatggagag 5110

>gb|AF296088.1|AF296088 Porcine teschovirus strain O 2b polyprotein gene, complete cds
          Length = 7012

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 173  aaaggaaaagccaacatggaaatg 196
            |||||| |||||||||||||||||
Sbjct: 4982 aaaggacaagccaacatggaaatg 5005

>emb|BX004992.13| Zebrafish DNA sequence from clone CH211-120E13 in linkage group 16,
              complete sequence
          Length = 195432

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    aaaggaaaagccaacatgga 192
              ||||||||||||||||||||
Sbjct: 119584 aaaggaaaagccaacatgga 119603

>emb|CT030654.8| Mouse DNA sequence from clone RP23-332G16 on chromosome 17, complete
              sequence
          Length = 194694

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 254    tagctactcatctcctctgt 273
              ||||||||||||||||||||
Sbjct: 178140 tagctactcatctcctctgt 178121

>gb|AC169084.3| Mus musculus BAC clone RP24-427O13 from chromosome 9, complete sequence
          Length = 170491

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   caggttcttcaatgctatca 317
             ||||||||||||||||||||
Sbjct: 23135 caggttcttcaatgctatca 23116

>emb|AL606977.28| Mouse DNA sequence from clone RP23-284L6 on chromosome 4, complete
             sequence
          Length = 199429

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   aagccaacatggaaatgcag 199
             ||||||||||||||||||||
Sbjct: 41055 aagccaacatggaaatgcag 41036

>gb|AC168266.2| Mus musculus BAC clone RP24-245G1 from chromosome 9, complete sequence
          Length = 188778

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   caggttcttcaatgctatca 317
             ||||||||||||||||||||
Sbjct: 36758 caggttcttcaatgctatca 36777

>dbj|AP001860.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:343A4, complete
             sequence
          Length = 86519

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   aagagggcaaaattacaagg 123
             ||||||||||||||||||||
Sbjct: 35909 aagagggcaaaattacaagg 35928


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,231,484
Number of Sequences: 3902068
Number of extensions: 5231484
Number of successful extensions: 87039
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86919
Number of HSP's gapped (non-prelim): 117
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)