>CLOCK_DROME (O61735) Circadian locomoter output cycles protein kaput (dCLOCK)|
           (dPAS1)
          Length = 1027

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 91  NRHNLPAEHQSLQLKVHFQTNQHTQTQCTDPSEEQQ 198
           ++HNL  +HQS     H Q  QHTQ Q     ++QQ
Sbjct: 779 HQHNLQQQHQS-----HSQLQQHTQQQHQQQQQQQQ 809

>AAC3_DICDI (P14197) AAC-rich mRNA clone AAC3 protein (Fragment)|
          Length = 437

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 76  HRKRTNRHNLPAEHQSLQLKVHFQTNQHTQTQCTDPSEEQQ 198
           H +   +HN   + Q+   + H QT Q+ Q+Q    S++ Q
Sbjct: 35  HNQLHQQHNQQIQQQAQATQQHLQTQQYLQSQIHQQSQQSQ 75

>YDEE_SCHPO (Q10447) Hypothetical protein C12B10.14c in chromosome I|
          Length = 665

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 36  FVGEEXKCHQCGNAP*EDKSAQSSCRASEFTIESSFPNE 152
           F     K H   NA  +  ++ S+CRASE  + SSFPN+
Sbjct: 7   FHEHHAKSHFHNNAC-QSNASSSACRASEDHLVSSFPND 44

>SYY_METTH (O27795) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA|
           ligase) (TyrRS)
          Length = 319

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 117 SEFTIESSFPNEPTHTDTMYR 179
           +EF + SSF  EP +TD +YR
Sbjct: 104 TEFILGSSFQTEPEYTDLVYR 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.122    0.337 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,055,699
Number of Sequences: 219361
Number of extensions: 402717
Number of successful extensions: 943
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)