>gb|AY107155.1| Zea mays PCO068737 mRNA sequence
          Length = 703

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 227/290 (78%)
 Strand = Plus / Minus

                                                                       
Query: 369 gaatcatccccgccagagagcaaccagcgcatgtaccccgccccgtcgtccagggaggag 428
           ||||||||||| ||||| ||||||||||| |  ||| || | || || |||| ||| || 
Sbjct: 316 gaatcatccccaccagatagcaaccagcgaagatactccactccatcatccaaggatgaa 257

                                                                       
Query: 429 gcctcgctggggatggtcacccgcttgcgagtcagcgtctcgaccgtcacggccgccctc 488
           ||||||| || ||||||||||| |||||| ||||| || || |||||||  ||   ||||
Sbjct: 256 gcctcgccggagatggtcaccctcttgcgtgtcagtgtttccaccgtcaatgctttcctc 197

                                                                       
Query: 489 ttccgcccgcctcttgggcgcgagcgcagctgctcgtccatctcctcatagtcgccctct 548
           ||||| || |||||||| || |  |||| |||||| |||| ||| ||| |||| || || 
Sbjct: 196 ttccgaccacctcttggccgggcacgcaactgctcatccaactcttcaaagtctccttca 137

                                                                       
Query: 549 acatatacatgccaactggacttctcatgattgtccctgacatgcttgtagtggaatgtc 608
           |  ||||||||   ||  ||  ||||||| || |||||||||||||||||   ||| | |
Sbjct: 136 atgtatacatgagcaccagatgtctcatggttatccctgacatgcttgtaagtgaacgcc 77

                                                             
Query: 609 ttgccacaccccacgactcgacacttgaaaggtctgacttggtcatggca 658
           ||||||||||| |||| ||  |||||||||||| | |  |||||||||||
Sbjct: 76  ttgccacacccaacgattccgcacttgaaaggtttcagctggtcatggca 27

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 564    ctggacttctcatgattgtccctgacatgcttgta 598
              ||||| |||||||| ||||||||||||||||||||
Sbjct: 854418 ctggatttctcatggttgtccctgacatgcttgta 854452



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 128/163 (78%)
 Strand = Plus / Plus

                                                                          
Query: 371    atcatccccgccagagagcaaccagcgcatgtaccccgccccgtcgtccagggaggaggc 430
              ||||||||| ||||| ||||||||||||| |||| | |  || | |||||  || || ||
Sbjct: 854129 atcatccccaccagaaagcaaccagcgcaggtactcagttccattgtccaacgacgaagc 854188

                                                                          
Query: 431    ctcgctggggatggtcacccgcttgcgagtcagcgtctcgaccgtcacggccgccctctt 490
               |||| | | |||||||||| |||||| || || || ||||| ||||| ||   ||||||
Sbjct: 854189 gtcgccgtgcatggtcaccctcttgcgcgtaagagtttcgacagtcacagctttcctctt 854248

                                                         
Query: 491    ccgcccgcctcttgggcgcgagcgcagctgctcgtccatctcc 533
              ||| || ||||| || | |||| | | ||||||||||||||||
Sbjct: 854249 ccgtccacctctcggacacgagagtaactgctcgtccatctcc 854291

>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1442_E05
          Length = 162407

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 564   ctggacttctcatgattgtccctgacatgcttgta 598
             ||||| |||||||| ||||||||||||||||||||
Sbjct: 63626 ctggatttctcatggttgtccctgacatgcttgta 63660



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 128/163 (78%)
 Strand = Plus / Plus

                                                                         
Query: 371   atcatccccgccagagagcaaccagcgcatgtaccccgccccgtcgtccagggaggaggc 430
             ||||||||| ||||| ||||||||||||| |||| | |  || | |||||  || || ||
Sbjct: 63337 atcatccccaccagaaagcaaccagcgcaggtactcagttccattgtccaacgacgaagc 63396

                                                                         
Query: 431   ctcgctggggatggtcacccgcttgcgagtcagcgtctcgaccgtcacggccgccctctt 490
              |||| | | |||||||||| |||||| || || || ||||| ||||| ||   ||||||
Sbjct: 63397 gtcgccgtgcatggtcaccctcttgcgcgtaagagtttcgacagtcacagctttcctctt 63456

                                                        
Query: 491   ccgcccgcctcttgggcgcgagcgcagctgctcgtccatctcc 533
             ||| || ||||| || | |||| | | ||||||||||||||||
Sbjct: 63457 ccgtccacctctcggacacgagagtaactgctcgtccatctcc 63499

>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0036E06
          Length = 137926

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 564    ctggacttctcatgattgtccctgacatgcttgta 598
              ||||| |||||||| ||||||||||||||||||||
Sbjct: 132549 ctggatttctcatggttgtccctgacatgcttgta 132583



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 128/163 (78%)
 Strand = Plus / Plus

                                                                          
Query: 371    atcatccccgccagagagcaaccagcgcatgtaccccgccccgtcgtccagggaggaggc 430
              ||||||||| ||||| ||||||||||||| |||| | |  || | |||||  || || ||
Sbjct: 132260 atcatccccaccagaaagcaaccagcgcaggtactcagttccattgtccaacgacgaagc 132319

                                                                          
Query: 431    ctcgctggggatggtcacccgcttgcgagtcagcgtctcgaccgtcacggccgccctctt 490
               |||| | | |||||||||| |||||| || || || ||||| ||||| ||   ||||||
Sbjct: 132320 gtcgccgtgcatggtcaccctcttgcgcgtaagagtttcgacagtcacagctttcctctt 132379

                                                         
Query: 491    ccgcccgcctcttgggcgcgagcgcagctgctcgtccatctcc 533
              ||| || ||||| || | |||| | | ||||||||||||||||
Sbjct: 132380 ccgtccacctctcggacacgagagtaactgctcgtccatctcc 132422

>dbj|AK100473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093M20, full
            insert sequence
          Length = 2914

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 564  ctggacttctcatgattgtccctgacatgcttgta 598
            ||||| |||||||| ||||||||||||||||||||
Sbjct: 2387 ctggatttctcatggttgtccctgacatgcttgta 2353



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 128/163 (78%)
 Strand = Plus / Minus

                                                                        
Query: 371  atcatccccgccagagagcaaccagcgcatgtaccccgccccgtcgtccagggaggaggc 430
            ||||||||| ||||| ||||||||||||| |||| | |  || | |||||  || || ||
Sbjct: 2580 atcatccccaccagaaagcaaccagcgcaggtactcagttccattgtccaacgacgaagc 2521

                                                                        
Query: 431  ctcgctggggatggtcacccgcttgcgagtcagcgtctcgaccgtcacggccgccctctt 490
             |||| | | |||||||||| |||||| || || || ||||| ||||| ||   ||||||
Sbjct: 2520 gtcgccgtgcatggtcaccctcttgcgcgtaagagtttcgacagtcacagctttcctctt 2461

                                                       
Query: 491  ccgcccgcctcttgggcgcgagcgcagctgctcgtccatctcc 533
            ||| || ||||| || | |||| | | ||||||||||||||||
Sbjct: 2460 ccgtccacctctcggacacgagagtaactgctcgtccatctcc 2418

>gb|AY616056.1| Prototheca wickerhamii plastid pyruvate kinase mRNA, partial cds;
           nuclear gene for plastid product
          Length = 780

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 416 gtccagggaggaggcctcgctgg 438
           |||||||||||||||||||||||
Sbjct: 290 gtccagggaggaggcctcgctgg 268

>ref|XM_475509.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1635

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 570  ttctcatgattgtccctgacatgcttgta 598
            |||||||| |||||||| |||||||||||
Sbjct: 1334 ttctcatggttgtcccttacatgcttgta 1306

>gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1001_G01,
             complete sequence
          Length = 122768

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 570   ttctcatgattgtccctgacatgcttgta 598
             |||||||| |||||||| |||||||||||
Sbjct: 40330 ttctcatggttgtcccttacatgcttgta 40302

>ref|XM_776446.1| PREDICTED: Strongylocentrotus purpuratus similar to Transcription
           factor IIIA (Factor A) (TFIIIA) (LOC576102), mRNA
          Length = 1623

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 599 gtggaatgtcttgccacaccc 619
           |||||||||||||||||||||
Sbjct: 303 gtggaatgtcttgccacaccc 283

>emb|CR381684.9| Zebrafish DNA sequence from clone CH211-28P3 in linkage group 23,
              complete sequence
          Length = 184232

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 318    caaaacgtactgcaacaacat 338
              |||||||||||||||||||||
Sbjct: 167987 caaaacgtactgcaacaacat 168007

>gb|AC010058.7| Drosophila melanogaster 3L BAC RP98-26L14 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 181950

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 79     caacaccaagcaaccatccaa 99
              |||||||||||||||||||||
Sbjct: 132348 caacaccaagcaaccatccaa 132328

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 570     ttctcatgattgtccctgacatgcttgta 598
               |||||||| |||||||| |||||||||||
Sbjct: 1084719 ttctcatggttgtcccttacatgcttgta 1084691

>gb|AC154430.3| Mus musculus BAC clone RP24-208K8 from chromosome 16, complete sequence
          Length = 178222

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 221    tctgcatacatacacacaaac 241
              |||||||||||||||||||||
Sbjct: 101567 tctgcatacatacacacaaac 101587

>gb|AC021015.4| Homo sapiens BAC clone RP11-320C1 from 2, complete sequence
          Length = 148997

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 223    tgcatacatacacacaaacgt 243
              |||||||||||||||||||||
Sbjct: 111727 tgcatacatacacacaaacgt 111707

>dbj|AK101631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054O17, full
            insert sequence
          Length = 1875

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 570  ttctcatgattgtccctgacatgcttgta 598
            |||||||| |||||||| |||||||||||
Sbjct: 1341 ttctcatggttgtcccttacatgcttgta 1313

>dbj|AK099528.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031H23, full
            insert sequence
          Length = 1569

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 570  ttctcatgattgtccctgacatgcttgta 598
            |||||||| |||||||| |||||||||||
Sbjct: 1043 ttctcatggttgtcccttacatgcttgta 1015

>emb|BX005458.19| Zebrafish DNA sequence from clone CH211-173L10 in linkage group 18,
             complete sequence
          Length = 140289

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 97    caaaacacaacacagatttat 117
             |||||||||||||||||||||
Sbjct: 14073 caaaacacaacacagatttat 14053

>gb|AE003547.3| Drosophila melanogaster chromosome 3L, section 38 of 83 of the complete
              sequence
          Length = 281339

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     caacaccaagcaaccatccaa 99
              |||||||||||||||||||||
Sbjct: 107237 caacaccaagcaaccatccaa 107257

>dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0699E04
          Length = 175439

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 570    ttctcatgattgtccctgacatgcttgta 598
              |||||||| |||||||| |||||||||||
Sbjct: 175116 ttctcatggttgtcccttacatgcttgta 175088

>ref|XM_816966.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508153.390) partial mRNA
          Length = 1035

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 472 ccgtcacggccgccctcttccgcc 495
           |||||||||||||| |||||||||
Sbjct: 448 ccgtcacggccgccttcttccgcc 425

>gb|AC099304.6| Rattus norvegicus 2 BAC CH230-149H21 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 220543

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 639    ggtctgacttggtcatggca 658
              ||||||||||||||||||||
Sbjct: 147684 ggtctgacttggtcatggca 147703

>emb|BX571869.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              11/17
          Length = 349284

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    caaccacaactgacttgagc 274
              ||||||||||||||||||||
Sbjct: 279272 caaccacaactgacttgagc 279291

>gb|AC127185.3| Rattus norvegicus  BAC CH230-28E5 (Children's Hospital Oakland Research
             Institute Rat (BN/SsNHsd/MCW) BAC library) complete
             sequence
          Length = 233648

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   ccccaaactagctactacca 167
             ||||||||||||||||||||
Sbjct: 89939 ccccaaactagctactacca 89958

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 480     gccgccctcttccgcccgcc 499
               ||||||||||||||||||||
Sbjct: 7829570 gccgccctcttccgcccgcc 7829589

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     cagcaaattcgacaacaact 66
              ||||||||||||||||||||
Sbjct: 991103 cagcaaattcgacaacaact 991122

>gb|AC091100.14| Homo sapiens chromosome 15, clone RP11-593F23, complete sequence
          Length = 180227

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   tgctaaatcagaactctgca 226
             ||||||||||||||||||||
Sbjct: 91508 tgctaaatcagaactctgca 91527

>dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0523A04
          Length = 149049

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 480   gccgccctcttccgcccgcc 499
             ||||||||||||||||||||
Sbjct: 78568 gccgccctcttccgcccgcc 78587

>dbj|AB055927.1| Procambarus clarkii mRNA for projectin, complete cds
          Length = 27060

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 430   cctcgctggggatggtcacccgct 453
             ||||||||| ||||||||||||||
Sbjct: 10812 cctcgctggtgatggtcacccgct 10789

>gb|AC087780.19| Mus musculus strain C57BL/6J chromosome 1 clone rp23-324b17, complete
             sequence
          Length = 206924

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   ctgcatacatacacacaaac 241
             ||||||||||||||||||||
Sbjct: 38507 ctgcatacatacacacaaac 38488

>gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromosome unknown, complete
              sequence
          Length = 227692

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    acaactgacttgagcagcaa 279
              ||||||||||||||||||||
Sbjct: 176497 acaactgacttgagcagcaa 176516

>emb|AL805901.6| Mouse DNA sequence from clone RP23-24K4 on chromosome X, complete
              sequence
          Length = 243012

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    tttatgatggctattacaac 132
              ||||||||||||||||||||
Sbjct: 208757 tttatgatggctattacaac 208776

>dbj|AB060871.1| Macaca fascicularis brain cDNA clone:QtrA-12212, full insert sequence
          Length = 3061

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 549  acatatacatgccaactgga 568
            ||||||||||||||||||||
Sbjct: 1597 acatatacatgccaactgga 1616


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,045,029
Number of Sequences: 3902068
Number of extensions: 5045029
Number of successful extensions: 128215
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128049
Number of HSP's gapped (non-prelim): 165
length of query: 658
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 635
effective length of database: 17,143,297,704
effective search space: 10885994042040
effective search space used: 10885994042040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)