ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31m09 |
|---|---|
| Clone Library Name | barley_pub |
>SPCS2_ARATH (P58684) Probable signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 192 Score = 161 bits (408), Expect(2) = 1e-44 Identities = 78/110 (70%), Positives = 91/110 (82%) Frame = -1 Query: 568 GCIALYVVMNVVLLILSYTKEKDAIIFTHPPAGSFNNTGLVISSKLPRFSDMYNLSIASA 389 GCIALYVV+N VL ++ YTKEK+AI+FT+PP GSF +TGLV+SSKLPRFSD Y L+I SA Sbjct: 81 GCIALYVVLNAVLQLILYTKEKNAILFTYPPEGSFTSTGLVVSSKLPRFSDQYTLTIDSA 140 Query: 388 DPESISAHKPVHFTKSVTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 239 DP+SISA K V TKSVT+WFTK+GVLVEGLFWKDVE LI +Y E K Sbjct: 141 DPKSISAGKSVQLTKSVTQWFTKDGVLVEGLFWKDVEALIKNYAEEEPKK 190 Score = 38.5 bits (88), Expect(2) = 1e-44 Identities = 15/21 (71%), Positives = 20/21 (95%) Frame = -3 Query: 629 IALLAQFYPKKFPQNREFLLG 567 +AL+AQFY KKFP+NR+FL+G Sbjct: 61 VALVAQFYNKKFPENRDFLIG 81
>SPCS2_XENTR (Q5M8Y1) Probable signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 201 Score = 58.9 bits (141), Expect = 1e-08 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 2/111 (1%) Frame = -1 Query: 565 CIALYVVMNVVLLILSYTKEKDAIIFTH--PPAGSFNNTGLVISSKLPRFSDMYNLSIAS 392 C+ Y +M +L I + KEK + H PAG + +SS L RF D Y L + Sbjct: 92 CVISYFLMMGILTIYTSYKEKSIFLVAHRKDPAGMDPDDIWHLSSSLKRFDDKYTLKVTY 151 Query: 391 ADPESISAHKPVHFTKSVTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 239 ++ A + FTKS+ ++F G LV LF +V +L D E+K+K Sbjct: 152 ISGKT-KAQRDAEFTKSIARFFDDNGTLVMDLFEPEVSKLHDSLAMEKKTK 201
>SPCS2_MOUSE (Q9CYN2) Signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 226 Score = 55.8 bits (133), Expect = 1e-07 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Frame = -1 Query: 565 CIALYVVMNVVLLILSYTKEKDAIIFTH--PPAGSFNNTGLVISSKLPRFSDMYNLSIAS 392 C+ Y VM +L I + KEK + H P G + +SS L RF D Y L + Sbjct: 117 CVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTF 176 Query: 391 ADPESISAHKPVHFTKSVTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 239 + + FTKS+ K+F G LV + ++ RL D ERK K Sbjct: 177 ISGRT-KQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLATERKIK 226
>SPCS2_CANFA (Q28250) Signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 226 Score = 55.8 bits (133), Expect = 1e-07 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Frame = -1 Query: 565 CIALYVVMNVVLLILSYTKEKDAIIFTH--PPAGSFNNTGLVISSKLPRFSDMYNLSIAS 392 C+ Y VM +L I + KEK + H P G + +SS L RF D Y L + Sbjct: 117 CVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTF 176 Query: 391 ADPESISAHKPVHFTKSVTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 239 + + FTKS+ K+F G LV + ++ RL D ERK K Sbjct: 177 ISGRT-KQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLATERKIK 226
>SPCS2_BRARE (Q5BJI9) Probable signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 201 Score = 55.5 bits (132), Expect = 1e-07 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 2/111 (1%) Frame = -1 Query: 565 CIALYVVMNVVLLILSYTKEKDAIIFT--HPPAGSFNNTGLVISSKLPRFSDMYNLSIAS 392 C+ Y +M +L + + KEK+ + PAG + +SS L RF D Y L ++ Sbjct: 92 CVVSYFIMMGILTLYTSYKEKNIFLVAMQKDPAGMDPDHSWCLSSSLKRFDDQYTLRMSF 151 Query: 391 ADPESISAHKPVHFTKSVTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 239 D ++ + + FTKSV+ +F + G LV + K V +L D E+K+K Sbjct: 152 TDGKTKQSRE-TEFTKSVSVFFDENGTLVMDQYEKYVSKLHDTLATEKKTK 201
>SPCS2_PONPY (Q5RAY6) Signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 226 Score = 54.7 bits (130), Expect = 2e-07 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Frame = -1 Query: 565 CIALYVVMNVVLLILSYTKEKDAIIFTH--PPAGSFNNTGLVISSKLPRFSDMYNLSIAS 392 C+ Y VM +L I + KEK + H P G + +SS L RF D Y L + Sbjct: 117 CVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTF 176 Query: 391 ADPESISAHKPVHFTKSVTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 239 + + FTKS+ K+F G LV + ++ RL D ERK K Sbjct: 177 ISGRT-KQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIERKIK 226
>SPCS2_MACFA (Q4R512) Signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 226 Score = 54.7 bits (130), Expect = 2e-07 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Frame = -1 Query: 565 CIALYVVMNVVLLILSYTKEKDAIIFTH--PPAGSFNNTGLVISSKLPRFSDMYNLSIAS 392 C+ Y VM +L I + KEK + H P G + +SS L RF D Y L + Sbjct: 117 CVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTF 176 Query: 391 ADPESISAHKPVHFTKSVTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 239 + + FTKS+ K+F G LV + ++ RL D ERK K Sbjct: 177 ISGRT-KQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAVERKIK 226
>SPCS2_HUMAN (Q15005) Signal peptidase complex subunit 2 (EC 3.4.-.-)| (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) Length = 226 Score = 54.7 bits (130), Expect = 2e-07 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Frame = -1 Query: 565 CIALYVVMNVVLLILSYTKEKDAIIFTH--PPAGSFNNTGLVISSKLPRFSDMYNLSIAS 392 C+ Y VM +L I + KEK + H P G + +SS L RF D Y L + Sbjct: 117 CVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTF 176 Query: 391 ADPESISAHKPVHFTKSVTKWFTKEGVLVEGLFWKDVERLIDDYNNERKSK 239 + + FTKS+ K+F G LV + ++ RL D ERK K Sbjct: 177 ISGRT-KQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIERKIK 226
>VSG2_TRYEQ (P20950) Variant surface glycoprotein 20 precursor (VSG-20)| Length = 457 Score = 29.6 bits (65), Expect = 7.7 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = -1 Query: 400 IASADPESISAHKPVHFTKSVTKWFTKEGVLVEGLFWKDVER---LIDDYNNERKSK 239 I D E+ K ++TK++ EG E WK +ER + D E+ +K Sbjct: 300 IGKTDAEAGQESKEPELAAAITKYYGTEGTKFEDQLWKAIERTPAYLGDQKKEQTTK 356 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,674,242 Number of Sequences: 219361 Number of extensions: 1645940 Number of successful extensions: 3653 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3571 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3650 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
