ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31m09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK099024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 408 e-111
2dbj|AK071742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 408 e-111
3dbj|AK059953.1| Oryza sativa (japonica cultivar-group) cDNA clon... 408 e-111
4ref|XM_472655.1| Oryza sativa (japonica cultivar-group), predic... 404 e-109
5gb|AY105062.1| Zea mays PCO090513 mRNA sequence 270 5e-69
6ref|XM_466287.1| Oryza sativa (japonica cultivar-group), mRNA 127 5e-26
7ref|XM_506832.1| PREDICTED Oryza sativa (japonica cultivar-group... 127 5e-26
8dbj|AK102047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 5e-26
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
10emb|AL731593.2|OSJN00235 Oryza sativa genomic DNA, chromosome 4,... 121 3e-24
11dbj|AK061593.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
13dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
14gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b0... 80 1e-11
15emb|AJ718572.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC2-42-28... 54 6e-04
16gb|AC068802.29| Homo sapiens 12 BAC RP11-510P12 (Roswell Park Ca... 44 0.55
17gb|DQ205538.1| Bos taurus prion protein (PRNP) and prion-like pr... 42 2.2
18gb|AC068605.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 2.2
19gb|AY944236.1| Bos taurus prion preproprotein (PRNP) and prion-l... 42 2.2
20gb|AC115890.8| Mus musculus chromosome 6, clone RP24-421B23, com... 42 2.2
21ref|XM_445860.1| Candida glabrata CBS138, CAGL0E03982g partial mRNA 42 2.2
22gb|AF511114.1| Sus scrofa clone 1 porcine endogenous retrovirus ... 42 2.2
23emb|AL513211.15| Human DNA sequence from clone RP13-476E20 on ch... 42 2.2
24emb|CR380951.1| Candida glabrata strain CBS138 chromosome E comp... 42 2.2
25gb|AC104140.5| Drosophila melanogaster X BAC RP98-9H13 (Roswell ... 42 2.2
26gb|AC010052.7| Drosophila melanogaster 3L BAC RP98-5G1 (Roswell ... 42 2.2
27gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 42 2.2
28gb|AC104145.7| Drosophila melanogaster X BAC RP98-30B1 (Roswell ... 42 2.2
29dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 42 2.2
30tpe|BN000291.1|BTA000291 TPA: TPA_exp: Bos taurus prp gene for p... 42 2.2
31gb|AE003549.4| Drosophila melanogaster chromosome 3L, section 36... 42 2.2
32gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 o... 42 2.2
33emb|AJ298878.1|BTA298878 Bos taurus prp gene for prion protein 42 2.2
34dbj|AB051121.1| Macaca fascicularis brain cDNA, clone:QccE-19706 42 2.2
35gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome 40 8.6
36gb|AC163038.5| Mus musculus BAC clone RP23-180A14 from chromosom... 40 8.6
37gb|AC079987.5| Homo sapiens BAC clone RP11-655J18 from 7, comple... 40 8.6
38gb|AC142384.2| Homo sapiens chromosome 16 clone RP11-293B20, com... 40 8.6
39gb|AC122447.4| Mus musculus BAC clone RP24-240O5 from chromosome... 40 8.6
40gb|AC024886.20| Homo sapiens 3 BAC RP11-25K24 (Roswell Park Canc... 40 8.6
41emb|AL022312.7|HS1104E15 Human DNA sequence from clone RP5-1104E... 40 8.6
42emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4,... 40 8.6
43emb|AJ235273.1|RPXX04 Rickettsia prowazekii strain Madrid E, com... 40 8.6
44gb|AC148290.3| Medicago truncatula chromosome 2 BAC clone mth2-4... 40 8.6
45gb|AC139476.3| Homo sapiens chromosome 16 clone RP11-341P6, comp... 40 8.6
46gb|AC151714.3| Mus musculus BAC clone RP23-437A9 from chromosome... 40 8.6
47gb|AC010092.4| Homo sapiens BAC clone RP11-306M1 from 2, complet... 40 8.6
48gb|AC136944.3| Homo sapiens chromosome 16 clone RP11-23E10, comp... 40 8.6
49gb|AC133920.2| Homo sapiens chromosome 16 clone RP11-413O9, comp... 40 8.6
50dbj|AB009054.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.6
51dbj|AK107520.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.6
52emb|BX324128.14| Zebrafish DNA sequence from clone DKEY-181O6 in... 40 8.6 
>dbj|AK099024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124O17, full
           insert sequence
          Length = 928

 Score =  408 bits (206), Expect = e-111
 Identities = 351/398 (88%), Gaps = 1/398 (0%)
 Strand = Plus / Minus

                                                                       
Query: 234 attcatttgctcttgcgctcattgttgtagtcatcaatcagtctctcaacgtccttccag 293
           |||||||||| |||||||||| ||||||||||||||||||  |||||||| |||||||||
Sbjct: 658 attcatttgcccttgcgctcagtgttgtagtcatcaatcaacctctcaacatccttccag 599

                                                                       
Query: 294 aacaggccctccacaagaacaccttccttcgtaaaccattttgtaacactcttagtgaag 353
           |||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| 
Sbjct: 598 aacaggccttccacgagaactccttccttagtaaaccattttgtaacactcttagtgaaa 539

                                                                       
Query: 354 tggacgggcttgtgagcagagatagactctggatccgcgctggctattgaaagattgtac 413
           || || ||||| |  || || |||||||  ||||| || ||||||||||  | | |||||
Sbjct: 538 tgaactggcttattggcggaaatagactggggatctgcactggctattgtgatagtgtac 479

                                                                       
Query: 414 atgtccgagaatcttggtaactttgaagatataaccaggccagtgttattgaaagaacca 473
           || ||||||||||||||||| |||||||||||||| || |||||| ||||||||||||| 
Sbjct: 478 atatccgagaatcttggtaattttgaagatataactagtccagtgctattgaaagaaccc 419

                                                                       
Query: 474 gcaggagggtgggtgaagatgatggcatccttctccttggtgtagctgaggatcagcagc 533
           ||||||||||| ||||| || ||||||||||| |||||||| ||||| || |||| ||||
Sbjct: 418 gcaggagggtgtgtgaacataatggcatccttttccttggtatagctaagtatcaacagc 359

                                                                       
Query: 534 accacattcatcaccacatacagcgcgatgcagcccgagcaggaactcgcggttctgcgg 593
           |||||||||| ||||||||| |  ||||||||| ||||| ||||||||||||||||| ||
Sbjct: 358 accacattcaacaccacatataatgcgatgcag-ccgaggaggaactcgcggttctgggg 300

                                                 
Query: 594 gaacttcttcgggtagaactgcgcgaggagcgcgatgg 631
           |||||||||||||||||||||||||||||| |||||||
Sbjct: 299 gaacttcttcgggtagaactgcgcgaggagagcgatgg 262
to top
>dbj|AK071742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109J17, full
           insert sequence
          Length = 822

 Score =  408 bits (206), Expect = e-111
 Identities = 351/398 (88%), Gaps = 1/398 (0%)
 Strand = Plus / Minus

                                                                       
Query: 234 attcatttgctcttgcgctcattgttgtagtcatcaatcagtctctcaacgtccttccag 293
           |||||||||| |||||||||| ||||||||||||||||||  |||||||| |||||||||
Sbjct: 658 attcatttgcccttgcgctcagtgttgtagtcatcaatcaacctctcaacatccttccag 599

                                                                       
Query: 294 aacaggccctccacaagaacaccttccttcgtaaaccattttgtaacactcttagtgaag 353
           |||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| 
Sbjct: 598 aacaggccttccacgagaactccttccttagtaaaccattttgtaacactcttagtgaaa 539

                                                                       
Query: 354 tggacgggcttgtgagcagagatagactctggatccgcgctggctattgaaagattgtac 413
           || || ||||| |  || || |||||||  ||||| || ||||||||||  | | |||||
Sbjct: 538 tgaactggcttattggcggaaatagactggggatctgcactggctattgtgatagtgtac 479

                                                                       
Query: 414 atgtccgagaatcttggtaactttgaagatataaccaggccagtgttattgaaagaacca 473
           || ||||||||||||||||| |||||||||||||| || |||||| ||||||||||||| 
Sbjct: 478 atatccgagaatcttggtaattttgaagatataactagtccagtgctattgaaagaaccc 419

                                                                       
Query: 474 gcaggagggtgggtgaagatgatggcatccttctccttggtgtagctgaggatcagcagc 533
           ||||||||||| ||||| || ||||||||||| |||||||| ||||| || |||| ||||
Sbjct: 418 gcaggagggtgtgtgaacataatggcatccttttccttggtatagctaagtatcaacagc 359

                                                                       
Query: 534 accacattcatcaccacatacagcgcgatgcagcccgagcaggaactcgcggttctgcgg 593
           |||||||||| ||||||||| |  ||||||||| ||||| ||||||||||||||||| ||
Sbjct: 358 accacattcaacaccacatataatgcgatgcag-ccgaggaggaactcgcggttctgggg 300

                                                 
Query: 594 gaacttcttcgggtagaactgcgcgaggagcgcgatgg 631
           |||||||||||||||||||||||||||||| |||||||
Sbjct: 299 gaacttcttcgggtagaactgcgcgaggagagcgatgg 262
to top
>dbj|AK059953.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-C02, full
           insert sequence
          Length = 1081

 Score =  408 bits (206), Expect = e-111
 Identities = 351/398 (88%), Gaps = 1/398 (0%)
 Strand = Plus / Minus

                                                                       
Query: 234 attcatttgctcttgcgctcattgttgtagtcatcaatcagtctctcaacgtccttccag 293
           |||||||||| |||||||||| ||||||||||||||||||  |||||||| |||||||||
Sbjct: 664 attcatttgcccttgcgctcagtgttgtagtcatcaatcaacctctcaacatccttccag 605

                                                                       
Query: 294 aacaggccctccacaagaacaccttccttcgtaaaccattttgtaacactcttagtgaag 353
           |||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| 
Sbjct: 604 aacaggccttccacgagaactccttccttagtaaaccattttgtaacactcttagtgaaa 545

                                                                       
Query: 354 tggacgggcttgtgagcagagatagactctggatccgcgctggctattgaaagattgtac 413
           || || ||||| |  || || |||||||  ||||| || ||||||||||  | | |||||
Sbjct: 544 tgaactggcttattggcggaaatagactggggatctgcactggctattgtgatagtgtac 485

                                                                       
Query: 414 atgtccgagaatcttggtaactttgaagatataaccaggccagtgttattgaaagaacca 473
           || ||||||||||||||||| |||||||||||||| || |||||| ||||||||||||| 
Sbjct: 484 atatccgagaatcttggtaattttgaagatataactagtccagtgctattgaaagaaccc 425

                                                                       
Query: 474 gcaggagggtgggtgaagatgatggcatccttctccttggtgtagctgaggatcagcagc 533
           ||||||||||| ||||| || ||||||||||| |||||||| ||||| || |||| ||||
Sbjct: 424 gcaggagggtgtgtgaacataatggcatccttttccttggtatagctaagtatcaacagc 365

                                                                       
Query: 534 accacattcatcaccacatacagcgcgatgcagcccgagcaggaactcgcggttctgcgg 593
           |||||||||| ||||||||| |  ||||||||||| ||| ||||||||||||||||| ||
Sbjct: 364 accacattcaacaccacatataatgcgatgcagcc-gaggaggaactcgcggttctgggg 306

                                                 
Query: 594 gaacttcttcgggtagaactgcgcgaggagcgcgatgg 631
           |||||||||||||||||||||||||||||| |||||||
Sbjct: 305 gaacttcttcgggtagaactgcgcgaggagagcgatgg 268
to top
>ref|XM_472655.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 579

 Score =  404 bits (204), Expect = e-109
 Identities = 349/396 (88%), Gaps = 1/396 (0%)
 Strand = Plus / Minus

                                                                       
Query: 236 tcatttgctcttgcgctcattgttgtagtcatcaatcagtctctcaacgtccttccagaa 295
           |||||||| |||||||||| ||||||||||||||||||  |||||||| |||||||||||
Sbjct: 579 tcatttgcccttgcgctcagtgttgtagtcatcaatcaacctctcaacatccttccagaa 520

                                                                       
Query: 296 caggccctccacaagaacaccttccttcgtaaaccattttgtaacactcttagtgaagtg 355
           |||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 519 caggccttccacgagaactccttccttagtaaaccattttgtaacactcttagtgaaatg 460

                                                                       
Query: 356 gacgggcttgtgagcagagatagactctggatccgcgctggctattgaaagattgtacat 415
            || ||||| |  || || |||||||  ||||| || ||||||||||  | | |||||||
Sbjct: 459 aactggcttattggcggaaatagactggggatctgcactggctattgtgatagtgtacat 400

                                                                       
Query: 416 gtccgagaatcttggtaactttgaagatataaccaggccagtgttattgaaagaaccagc 475
            ||||||||||||||||| |||||||||||||| || |||||| ||||||||||||| ||
Sbjct: 399 atccgagaatcttggtaattttgaagatataactagtccagtgctattgaaagaacccgc 340

                                                                       
Query: 476 aggagggtgggtgaagatgatggcatccttctccttggtgtagctgaggatcagcagcac 535
           ||||||||| ||||| || ||||||||||| |||||||| ||||| || |||| ||||||
Sbjct: 339 aggagggtgtgtgaacataatggcatccttttccttggtatagctaagtatcaacagcac 280

                                                                       
Query: 536 cacattcatcaccacatacagcgcgatgcagcccgagcaggaactcgcggttctgcggga 595
           |||||||| ||||||||| |  ||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 279 cacattcaacaccacatataatgcgatgcag-ccgaggaggaactcgcggttctggggga 221

                                               
Query: 596 acttcttcgggtagaactgcgcgaggagcgcgatgg 631
           |||||||||||||||||||||||||||| |||||||
Sbjct: 220 acttcttcgggtagaactgcgcgaggagagcgatgg 185
to top
>gb|AY105062.1| Zea mays PCO090513 mRNA sequence
          Length = 956

 Score =  270 bits (136), Expect = 5e-69
 Identities = 247/284 (86%)
 Strand = Plus / Minus

                                                                       
Query: 233 aattcatttgctcttgcgctcattgttgtagtcatcaatcagtctctcaacgtccttcca 292
           ||||||||| |||||||||||| |||||||||||||||||||  |||| || ||||||||
Sbjct: 662 aattcatttactcttgcgctcactgttgtagtcatcaatcagcttctcgacatccttcca 603

                                                                       
Query: 293 gaacaggccctccacaagaacaccttccttcgtaaaccattttgtaacactcttagtgaa 352
           ||||||||||||||||||||| |||||||| |||||||| ||||| || |||||||||||
Sbjct: 602 gaacaggccctccacaagaactccttcctttgtaaaccactttgttacgctcttagtgaa 543

                                                                       
Query: 353 gtggacgggcttgtgagcagagatagactctggatccgcgctggctattgaaagattgta 412
            || || |||||||  ||||||||||||| ||||||||| || |||||||  ||| ||||
Sbjct: 542 atgaactggcttgtttgcagagatagactgtggatccgcacttgctattgtgagagtgta 483

                                                                       
Query: 413 catgtccgagaatcttggtaactttgaagatataaccaggccagtgttattgaaagaacc 472
           ||||||||||||||||||||| || ||||| |||   ||||||||| |  ||||||||||
Sbjct: 482 catgtccgagaatcttggtaatttagaagaaatagtgaggccagtgctgctgaaagaacc 423

                                                       
Query: 473 agcaggagggtgggtgaagatgatggcatccttctccttggtgt 516
              ||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 422 cataggagggtgcgtgaataggatggcatccttctccttggtgt 379
to top
>ref|XM_466287.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 720

 Score =  127 bits (64), Expect = 5e-26
 Identities = 109/124 (87%)
 Strand = Plus / Minus

                                                                       
Query: 235 ttcatttgctcttgcgctcattgttgtagtcatcaatcagtctctcaacgtccttccaga 294
           ||||||||||| || | ||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct: 598 ttcatttgctcctgtggtcactgttgtagtcatcaatcagtttctcaacatccttccaga 539

                                                                       
Query: 295 acaggccctccacaagaacaccttccttcgtaaaccattttgtaacactcttagtgaagt 354
           |||  || ||||||||||| || ||||| || ||||||||||| |||||||||||||| |
Sbjct: 538 acaaaccttccacaagaaccccatccttggtgaaccattttgtgacactcttagtgaaat 479

               
Query: 355 ggac 358
           ||||
Sbjct: 478 ggac 475



 Score =  107 bits (54), Expect = 4e-20
 Identities = 178/218 (81%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                       
Query: 411 tacatgtccgagaatcttggtaactttgaagatataaccaggccagtgttattgaaagaa 470
           |||||||| || |||||||||||||||||||||||||| || |||||  |||| || || 
Sbjct: 422 tacatgtctgacaatcttggtaactttgaagatataacaagcccagtcctattaaatgat 363

                                                                       
Query: 471 ccagcaggagggtgggtgaagatgatggcatccttctccttggtgtagctgaggatcagc 530
           || || |||||||  ||||||| |||||| | |||||||||||||||| | | |||| ||
Sbjct: 362 cccgcgggagggtacgtgaagaggatggcgttcttctccttggtgtaggtaacgatctgc 303

                                                                       
Query: 531 agcaccacattcatcaccacatacagcgcgatgcagcccgagcaggaactcgcggttctg 590
           ||| |||| || | | || | |||||||||||||||  |||| ||||  || | ||||| 
Sbjct: 302 agcgccacgttgagcgccgcgtacagcgcgatgcag-gcgaggaggacgtccctgttctc 244

                                                 
Query: 591 cgggaacttcttcgggtagaactgcgcgaggagcgcga 628
            ||||||||    |||||||||||||||||||||||||
Sbjct: 243 ggggaacttgcgggggtagaactgcgcgaggagcgcga 206
to top
>ref|XM_506832.1| PREDICTED Oryza sativa (japonica cultivar-group), P0020C11.25 mRNA
          Length = 840

 Score =  127 bits (64), Expect = 5e-26
 Identities = 109/124 (87%)
 Strand = Plus / Minus

                                                                       
Query: 235 ttcatttgctcttgcgctcattgttgtagtcatcaatcagtctctcaacgtccttccaga 294
           ||||||||||| || | ||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct: 633 ttcatttgctcctgtggtcactgttgtagtcatcaatcagtttctcaacatccttccaga 574

                                                                       
Query: 295 acaggccctccacaagaacaccttccttcgtaaaccattttgtaacactcttagtgaagt 354
           |||  || ||||||||||| || ||||| || ||||||||||| |||||||||||||| |
Sbjct: 573 acaaaccttccacaagaaccccatccttggtgaaccattttgtgacactcttagtgaaat 514

               
Query: 355 ggac 358
           ||||
Sbjct: 513 ggac 510



 Score =  107 bits (54), Expect = 4e-20
 Identities = 178/218 (81%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                       
Query: 411 tacatgtccgagaatcttggtaactttgaagatataaccaggccagtgttattgaaagaa 470
           |||||||| || |||||||||||||||||||||||||| || |||||  |||| || || 
Sbjct: 457 tacatgtctgacaatcttggtaactttgaagatataacaagcccagtcctattaaatgat 398

                                                                       
Query: 471 ccagcaggagggtgggtgaagatgatggcatccttctccttggtgtagctgaggatcagc 530
           || || |||||||  ||||||| |||||| | |||||||||||||||| | | |||| ||
Sbjct: 397 cccgcgggagggtacgtgaagaggatggcgttcttctccttggtgtaggtaacgatctgc 338

                                                                       
Query: 531 agcaccacattcatcaccacatacagcgcgatgcagcccgagcaggaactcgcggttctg 590
           ||| |||| || | | || | |||||||||||||||  |||| ||||  || | ||||| 
Sbjct: 337 agcgccacgttgagcgccgcgtacagcgcgatgcag-gcgaggaggacgtccctgttctc 279

                                                 
Query: 591 cgggaacttcttcgggtagaactgcgcgaggagcgcga 628
            ||||||||    |||||||||||||||||||||||||
Sbjct: 278 ggggaacttgcgggggtagaactgcgcgaggagcgcga 241
to top
>dbj|AK102047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082A02, full
           insert sequence
          Length = 840

 Score =  127 bits (64), Expect = 5e-26
 Identities = 109/124 (87%)
 Strand = Plus / Minus

                                                                       
Query: 235 ttcatttgctcttgcgctcattgttgtagtcatcaatcagtctctcaacgtccttccaga 294
           ||||||||||| || | ||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct: 633 ttcatttgctcctgtggtcactgttgtagtcatcaatcagtttctcaacatccttccaga 574

                                                                       
Query: 295 acaggccctccacaagaacaccttccttcgtaaaccattttgtaacactcttagtgaagt 354
           |||  || ||||||||||| || ||||| || ||||||||||| |||||||||||||| |
Sbjct: 573 acaaaccttccacaagaaccccatccttggtgaaccattttgtgacactcttagtgaaat 514

               
Query: 355 ggac 358
           ||||
Sbjct: 513 ggac 510



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 177/218 (81%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                       
Query: 411 tacatgtccgagaatcttggtaactttgaagatataaccaggccagtgttattgaaagaa 470
           |||||||| || |||||||||||||||||||||||||| || |||||  |||| || || 
Sbjct: 457 tacatgtctgacaatcttggtaactttgaagatataacaagcccagtcctattaaatgat 398

                                                                       
Query: 471 ccagcaggagggtgggtgaagatgatggcatccttctccttggtgtagctgaggatcagc 530
           || || |||||||  ||||||| |||||| | |||||||||||||||  | | |||| ||
Sbjct: 397 cccgcgggagggtacgtgaagaggatggcgttcttctccttggtgtatgtaacgatctgc 338

                                                                       
Query: 531 agcaccacattcatcaccacatacagcgcgatgcagcccgagcaggaactcgcggttctg 590
           ||| |||| || | | || | |||||||||||||||  |||| ||||  || | ||||| 
Sbjct: 337 agcgccacgttgagcgccgcgtacagcgcgatgcag-gcgaggaggacgtccctgttctc 279

                                                 
Query: 591 cgggaacttcttcgggtagaactgcgcgaggagcgcga 628
            ||||||||    |||||||||||||||||||||||||
Sbjct: 278 ggggaacttgcgggggtagaactgcgcgaggagcgcga 241
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  121 bits (61), Expect = 3e-24
 Identities = 124/145 (85%)
 Strand = Plus / Plus

                                                                            
Query: 328      accattttgtaacactcttagtgaagtggacgggcttgtgagcagagatagactctggat 387
                ||||||||||||||||||||||||| || || ||||| |  || || |||||||  ||||
Sbjct: 22223508 accattttgtaacactcttagtgaaatgaactggcttattggcggaaatagactggggat 22223567

                                                                            
Query: 388      ccgcgctggctattgaaagattgtacatgtccgagaatcttggtaactttgaagatataa 447
                | || ||||||||||  | | ||||||| ||||||||||||||||| |||||||||||||
Sbjct: 22223568 ctgcactggctattgtgatagtgtacatatccgagaatcttggtaattttgaagatataa 22223627

                                         
Query: 448      ccaggccagtgttattgaaagaacc 472
                | || |||||| |||||||||||||
Sbjct: 22223628 ctagtccagtgctattgaaagaacc 22223652



 Score =  121 bits (61), Expect = 3e-24
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                            
Query: 234      attcatttgctcttgcgctcattgttgtagtcatcaatcagtctctcaacgtccttccag 293
                |||||||||| |||||||||| ||||||||||||||||||  |||||||| |||||||||
Sbjct: 22222741 attcatttgcccttgcgctcagtgttgtagtcatcaatcaacctctcaacatccttccag 22222800

                                                     
Query: 294      aacaggccctccacaagaacaccttccttcgtaaacc 330
                |||||||| ||||| ||||| |||||||| |||||||
Sbjct: 22222801 aacaggccttccacgagaactccttccttagtaaacc 22222837



 Score =  107 bits (54), Expect = 4e-20
 Identities = 70/74 (94%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                            
Query: 558      gcgatgcagcccgagcaggaactcgcggttctgcgggaacttcttcgggtagaactgcgc 617
                ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 22224895 gcgatgcagcc-gaggaggaactcgcggttctgggggaacttcttcgggtagaactgcgc 22224953

                              
Query: 618      gaggagcgcgatgg 631
                |||||| |||||||
Sbjct: 22224954 gaggagagcgatgg 22224967



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                            
Query: 474      gcaggagggtgggtgaagatgatggcatccttctccttggtgtagctgaggatcagcagc 533
                ||||||||||| ||||| || ||||||||||| |||||||| ||||| || |||| ||||
Sbjct: 22224655 gcaggagggtgtgtgaacataatggcatccttttccttggtatagctaagtatcaacagc 22224714

                                    
Query: 534      accacattcatcaccacata 553
                |||||||||| |||||||||
Sbjct: 22224715 accacattcaacaccacata 22224734



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 158      tacagtactcttatcaaaaa 177
                ||||||||||||||||||||
Sbjct: 27518526 tacagtactcttatcaaaaa 27518507
to top
>emb|AL731593.2|OSJN00235 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08,
             complete sequence
          Length = 118959

 Score =  121 bits (61), Expect = 3e-24
 Identities = 124/145 (85%)
 Strand = Plus / Plus

                                                                         
Query: 328   accattttgtaacactcttagtgaagtggacgggcttgtgagcagagatagactctggat 387
             ||||||||||||||||||||||||| || || ||||| |  || || |||||||  ||||
Sbjct: 93369 accattttgtaacactcttagtgaaatgaactggcttattggcggaaatagactggggat 93428

                                                                         
Query: 388   ccgcgctggctattgaaagattgtacatgtccgagaatcttggtaactttgaagatataa 447
             | || ||||||||||  | | ||||||| ||||||||||||||||| |||||||||||||
Sbjct: 93429 ctgcactggctattgtgatagtgtacatatccgagaatcttggtaattttgaagatataa 93488

                                      
Query: 448   ccaggccagtgttattgaaagaacc 472
             | || |||||| |||||||||||||
Sbjct: 93489 ctagtccagtgctattgaaagaacc 93513



 Score =  121 bits (61), Expect = 3e-24
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                         
Query: 234   attcatttgctcttgcgctcattgttgtagtcatcaatcagtctctcaacgtccttccag 293
             |||||||||| |||||||||| ||||||||||||||||||  |||||||| |||||||||
Sbjct: 92602 attcatttgcccttgcgctcagtgttgtagtcatcaatcaacctctcaacatccttccag 92661

                                                  
Query: 294   aacaggccctccacaagaacaccttccttcgtaaacc 330
             |||||||| ||||| ||||| |||||||| |||||||
Sbjct: 92662 aacaggccttccacgagaactccttccttagtaaacc 92698



 Score =  107 bits (54), Expect = 4e-20
 Identities = 70/74 (94%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                         
Query: 558   gcgatgcagcccgagcaggaactcgcggttctgcgggaacttcttcgggtagaactgcgc 617
             ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 94756 gcgatgcagcc-gaggaggaactcgcggttctgggggaacttcttcgggtagaactgcgc 94814

                           
Query: 618   gaggagcgcgatgg 631
             |||||| |||||||
Sbjct: 94815 gaggagagcgatgg 94828



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                         
Query: 474   gcaggagggtgggtgaagatgatggcatccttctccttggtgtagctgaggatcagcagc 533
             ||||||||||| ||||| || ||||||||||| |||||||| ||||| || |||| ||||
Sbjct: 94516 gcaggagggtgtgtgaacataatggcatccttttccttggtatagctaagtatcaacagc 94575

                                 
Query: 534   accacattcatcaccacata 553
             |||||||||| |||||||||
Sbjct: 94576 accacattcaacaccacata 94595
to top
>dbj|AK061593.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-A06, full
           insert sequence
          Length = 722

 Score =  119 bits (60), Expect = 1e-23
 Identities = 108/124 (87%)
 Strand = Plus / Minus

                                                                       
Query: 235 ttcatttgctcttgcgctcattgttgtagtcatcaatcagtctctcaacgtccttccaga 294
           ||||||||||| || | ||| |||||||||||||||||||  ||||||| ||||||||||
Sbjct: 600 ttcatttgctcctgtggtcactgttgtagtcatcaatcagcttctcaacatccttccaga 541

                                                                       
Query: 295 acaggccctccacaagaacaccttccttcgtaaaccattttgtaacactcttagtgaagt 354
           |||  || ||||||||||| || ||||| || ||||||||||| |||||||||||||| |
Sbjct: 540 acaaaccttccacaagaaccccatccttggtgaaccattttgtgacactcttagtgaaat 481

               
Query: 355 ggac 358
           ||||
Sbjct: 480 ggac 477



 Score =  107 bits (54), Expect = 4e-20
 Identities = 178/218 (81%), Gaps = 1/218 (0%)
 Strand = Plus / Minus

                                                                       
Query: 411 tacatgtccgagaatcttggtaactttgaagatataaccaggccagtgttattgaaagaa 470
           |||||||| || |||||||||||||||||||||||||| || |||||  |||| || || 
Sbjct: 424 tacatgtctgacaatcttggtaactttgaagatataacaagcccagtcctattaaatgat 365

                                                                       
Query: 471 ccagcaggagggtgggtgaagatgatggcatccttctccttggtgtagctgaggatcagc 530
           || || |||||||  ||||||| |||||| | |||||||||||||||| | | |||| ||
Sbjct: 364 cccgcgggagggtacgtgaagaggatggcgttcttctccttggtgtaggtaacgatctgc 305

                                                                       
Query: 531 agcaccacattcatcaccacatacagcgcgatgcagcccgagcaggaactcgcggttctg 590
           ||| |||| || | | || | |||||||||||||||  |||| ||||  || | ||||| 
Sbjct: 304 agcgccacgttgagcgccgcgtacagcgcgatgcag-gcgaggaggacgtccctgttctc 246

                                                 
Query: 591 cgggaacttcttcgggtagaactgcgcgaggagcgcga 628
            ||||||||    |||||||||||||||||||||||||
Sbjct: 245 ggggaacttgcgggggtagaactgcgcgaggagcgcga 208
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                            
Query: 235      ttcatttgctcttgcgctcattgttgtagtcatcaatcagtctctcaacgtccttccaga 294
                ||||||||||| || | ||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct: 21481878 ttcatttgctcctgtggtcactgttgtagtcatcaatcagtttctcaacatccttccaga 21481937

                                            
Query: 295      acaggccctccacaagaacaccttcctt 322
                |||  || ||||||||||| || |||||
Sbjct: 21481938 acaaaccttccacaagaaccccatcctt 21481965



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 123/152 (80%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                            
Query: 477      ggagggtgggtgaagatgatggcatccttctccttggtgtagctgaggatcagcagcacc 536
                |||||||  ||||||| |||||| | |||||||||||||||| | | |||| ||||| ||
Sbjct: 21483386 ggagggtacgtgaagaggatggcgttcttctccttggtgtaggtaacgatctgcagcgcc 21483445

                                                                            
Query: 537      acattcatcaccacatacagcgcgatgcagcccgagcaggaactcgcggttctgcgggaa 596
                || || | | || | |||||||||||||||  |||| ||||  || | |||||  |||||
Sbjct: 21483446 acgttgagcgccgcgtacagcgcgatgcag-gcgaggaggacgtccctgttctcggggaa 21483504

                                                
Query: 597      cttcttcgggtagaactgcgcgaggagcgcga 628
                |||    |||||||||||||||||||||||||
Sbjct: 21483505 cttgcgggggtagaactgcgcgaggagcgcga 21483536



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                               
Query: 411      tacatgtccgagaatcttggtaactttgaagatataaccaggccagt 457
                |||||||| || |||||||||||||||||||||||||| || |||||
Sbjct: 21482528 tacatgtctgacaatcttggtaactttgaagatataacaagcccagt 21482574



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 328      accattttgtaacactcttagtgaagtggac 358
                |||||||||| |||||||||||||| |||||
Sbjct: 21482445 accattttgtgacactcttagtgaaatggac 21482475
to top
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020C11
          Length = 163328

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                         
Query: 235   ttcatttgctcttgcgctcattgttgtagtcatcaatcagtctctcaacgtccttccaga 294
             ||||||||||| || | ||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct: 76805 ttcatttgctcctgtggtcactgttgtagtcatcaatcagtttctcaacatccttccaga 76864

                                         
Query: 295   acaggccctccacaagaacaccttcctt 322
             |||  || ||||||||||| || |||||
Sbjct: 76865 acaaaccttccacaagaaccccatcctt 76892



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 123/152 (80%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                         
Query: 477   ggagggtgggtgaagatgatggcatccttctccttggtgtagctgaggatcagcagcacc 536
             |||||||  ||||||| |||||| | |||||||||||||||| | | |||| ||||| ||
Sbjct: 78313 ggagggtacgtgaagaggatggcgttcttctccttggtgtaggtaacgatctgcagcgcc 78372

                                                                         
Query: 537   acattcatcaccacatacagcgcgatgcagcccgagcaggaactcgcggttctgcgggaa 596
             || || | | || | |||||||||||||||  |||| ||||  || | |||||  |||||
Sbjct: 78373 acgttgagcgccgcgtacagcgcgatgcag-gcgaggaggacgtccctgttctcggggaa 78431

                                             
Query: 597   cttcttcgggtagaactgcgcgaggagcgcga 628
             |||    |||||||||||||||||||||||||
Sbjct: 78432 cttgcgggggtagaactgcgcgaggagcgcga 78463



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                            
Query: 411   tacatgtccgagaatcttggtaactttgaagatataaccaggccagt 457
             |||||||| || |||||||||||||||||||||||||| || |||||
Sbjct: 77455 tacatgtctgacaatcttggtaactttgaagatataacaagcccagt 77501



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 328   accattttgtaacactcttagtgaagtggac 358
             |||||||||| |||||||||||||| |||||
Sbjct: 77372 accattttgtgacactcttagtgaaatggac 77402
to top
>gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b06, complete sequence
          Length = 112592

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                        
Query: 477  ggagggtgggtgaagatgatggcatccttctccttggtgtagctgaggatcagcagcacc 536
            ||||||||||||||||  ||| |||||||||||| ||||||||| |||||||||||| ||
Sbjct: 6200 ggagggtgggtgaagagtatgacatccttctcctcggtgtagctaaggatcagcagcgcc 6259

                
Query: 537  acat 540
            ||||
Sbjct: 6260 acat 6263
to top
>emb|AJ718572.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC2-42-280, cultivar Bright
           Yellow 2
          Length = 229

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 288 ttccagaacaggccctccacaagaacaccttccttcgtaaaccattttgtaacactctt 346
           |||||||| || |||||||||||||| || ||||| |||||||||| ||| || |||||
Sbjct: 70  ttccagaatagcccctccacaagaactccatccttggtaaaccattgtgtgacgctctt 128
to top
>gb|AC068802.29| Homo sapiens 12 BAC RP11-510P12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 129350

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 2     ataaggggatatgatagaaagg 23
             ||||||||||||||||||||||
Sbjct: 49382 ataaggggatatgatagaaagg 49403
to top
>gb|DQ205538.1| Bos taurus prion protein (PRNP) and prion-like protein doppel (PRND)
             genes, complete cds; PRNT (PRNT) gene, exons 1 and 2; and
             putative protein gene, complete cds
          Length = 104027

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    tagaaaggaaatgaggtgaga 36
             |||||||||||||||||||||
Sbjct: 61469 tagaaaggaaatgaggtgaga 61449
to top
>gb|AC068605.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-284I15, complete
              sequence
          Length = 198551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 118    ccaagaaaagaattactgcaa 138
              |||||||||||||||||||||
Sbjct: 160136 ccaagaaaagaattactgcaa 160156
to top
>gb|AY944236.1| Bos taurus prion preproprotein (PRNP) and prion-like protein doppel
             preproprotein (PRND) genes, complete cds; and RASSF2 gene,
             complete sequence
          Length = 207929

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    tagaaaggaaatgaggtgaga 36
             |||||||||||||||||||||
Sbjct: 73736 tagaaaggaaatgaggtgaga 73716
to top
>gb|AC115890.8| Mus musculus chromosome 6, clone RP24-421B23, complete sequence
          Length = 191709

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 118   ccaagaaaagaattactgcaa 138
             |||||||||||||||||||||
Sbjct: 69749 ccaagaaaagaattactgcaa 69769
to top
>ref|XM_445860.1| Candida glabrata CBS138, CAGL0E03982g partial mRNA
          Length = 4980

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 157  atacagtactcttatcaaaaacatt 181
            ||||||||||||||||||| |||||
Sbjct: 4771 atacagtactcttatcaaatacatt 4747
to top
>gb|AF511114.1| Sus scrofa clone 1 porcine endogenous retrovirus gamma-10, partial
           sequence
          Length = 699

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 206 atcctgataatgatgacaagggcca 230
           |||||||||||| ||||||||||||
Sbjct: 557 atcctgataatggtgacaagggcca 581
to top
>emb|AL513211.15| Human DNA sequence from clone RP13-476E20 on chromosome 6 Contains a
             novel gene, the 5' end of the LRRC1 gene for leucine rich
             repeat containing 1 and a CpG island, complete sequence
          Length = 126228

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 500   atccttctccttggtgtagctgaggatcagcag 532
             ||||||||||||||||| |||| ||| ||||||
Sbjct: 64813 atccttctccttggtgtggctggggaccagcag 64781
to top
>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence
          Length = 687501

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 157    atacagtactcttatcaaaaacatt 181
              ||||||||||||||||||| |||||
Sbjct: 382975 atacagtactcttatcaaatacatt 382951
to top
>gb|AC104140.5| Drosophila melanogaster X BAC RP98-9H13 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 191342

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 16     tagaaaggaaatgaggtgaga 36
              |||||||||||||||||||||
Sbjct: 167606 tagaaaggaaatgaggtgaga 167586
to top
>gb|AC010052.7| Drosophila melanogaster 3L BAC RP98-5G1 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 164941

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 425  tcttggtaactttgaagatat 445
            |||||||||||||||||||||
Sbjct: 7447 tcttggtaactttgaagatat 7467
to top
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 516     tagctgaggatcagcagcacc 536
               |||||||||||||||||||||
Sbjct: 1601514 tagctgaggatcagcagcacc 1601494
to top
>gb|AC104145.7| Drosophila melanogaster X BAC RP98-30B1 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 161569

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 16   tagaaaggaaatgaggtgaga 36
            |||||||||||||||||||||
Sbjct: 2753 tagaaaggaaatgaggtgaga 2733
to top
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 10     atatgatagaaaggaaatgaggtga 34
              |||||| ||||||||||||||||||
Sbjct: 898579 atatgaaagaaaggaaatgaggtga 898603
to top
>tpe|BN000291.1|BTA000291 TPA: TPA_exp: Bos taurus prp gene for prion protein
          Length = 78056

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    tagaaaggaaatgaggtgaga 36
             |||||||||||||||||||||
Sbjct: 61471 tagaaaggaaatgaggtgaga 61451
to top
>gb|AE003549.4| Drosophila melanogaster chromosome 3L, section 36 of 83 of the complete
              sequence
          Length = 295143

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 425    tcttggtaactttgaagatat 445
              |||||||||||||||||||||
Sbjct: 239524 tcttggtaactttgaagatat 239544
to top
>gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 of 74 of the complete
             sequence
          Length = 309053

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    tagaaaggaaatgaggtgaga 36
             |||||||||||||||||||||
Sbjct: 29357 tagaaaggaaatgaggtgaga 29337
to top
>emb|AJ298878.1|BTA298878 Bos taurus prp gene for prion protein
          Length = 78056

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    tagaaaggaaatgaggtgaga 36
             |||||||||||||||||||||
Sbjct: 61471 tagaaaggaaatgaggtgaga 61451
to top
>dbj|AB051121.1| Macaca fascicularis brain cDNA, clone:QccE-19706
          Length = 1793

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 481 ggtgggtgaagatgatggcat 501
           |||||||||||||||||||||
Sbjct: 854 ggtgggtgaagatgatggcat 834
to top
>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome
          Length = 1111496

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 429    ggtaactttgaagatataac 448
              ||||||||||||||||||||
Sbjct: 933683 ggtaactttgaagatataac 933664
to top
>gb|AC163038.5| Mus musculus BAC clone RP23-180A14 from chromosome 13, complete sequence
          Length = 213865

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 493    tgatggcatccttctccttg 512
              ||||||||||||||||||||
Sbjct: 128642 tgatggcatccttctccttg 128623
to top
>gb|AC079987.5| Homo sapiens BAC clone RP11-655J18 from 7, complete sequence
          Length = 82151

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 117   accaagaaaagaattactgcaatc 140
             ||||||||||||||| ||||||||
Sbjct: 49668 accaagaaaagaattcctgcaatc 49645
to top
>gb|AC142384.2| Homo sapiens chromosome 16 clone RP11-293B20, complete sequence
          Length = 182907

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     gaaatgaggtgagatgtaatgtga 46
              |||||||||||||||| |||||||
Sbjct: 164897 gaaatgaggtgagatgaaatgtga 164920
to top
>gb|AC122447.4| Mus musculus BAC clone RP24-240O5 from chromosome 9, complete sequence
          Length = 158058

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    gccctccacaagaacacctt 318
              ||||||||||||||||||||
Sbjct: 132681 gccctccacaagaacacctt 132662
to top
>gb|AC024886.20| Homo sapiens 3 BAC RP11-25K24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 173270

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   tcatcctgataatgatgaca 223
             ||||||||||||||||||||
Sbjct: 50802 tcatcctgataatgatgaca 50821
to top
>emb|AL022312.7|HS1104E15 Human DNA sequence from clone RP5-1104E15 on chromosome 22q12.3-13.1
             Contains the MGAT3 gene for mannosyl
             (beta-1,4-)-glycoprotein
             beta-1,4-N-acetylglucosaminyltransferase, the gene for a
             predicted protein, the ATF4 gene for activating
             transcription factor 4 (tax-responsive enhancer element
             B67) and the 5' end of the CACNA1I gene for
             voltage-dependent calcium channel, alpha 1I subunit.
             Contains ESTs, STSs, GSSs and five putative CpG islands,
             complete sequence
          Length = 112460

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 279   tcaacgtccttccagaacaggccc 302
             |||||||||||||||| |||||||
Sbjct: 46289 tcaacgtccttccagaccaggccc 46266
to top
>emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17,
             complete sequence
          Length = 127259

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   tacagtactcttatcaaaaa 177
             ||||||||||||||||||||
Sbjct: 42502 tacagtactcttatcaaaaa 42483
to top
>emb|AJ235273.1|RPXX04 Rickettsia prowazekii strain Madrid E, complete genome; segment 4/4
          Length = 237523

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 429   ggtaactttgaagatataac 448
             ||||||||||||||||||||
Sbjct: 62039 ggtaactttgaagatataac 62020
to top
>gb|AC148290.3| Medicago truncatula chromosome 2 BAC clone mth2-45h12, complete
             sequence
          Length = 132181

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   cttccttcgtaaaccatttt 335
             ||||||||||||||||||||
Sbjct: 23285 cttccttcgtaaaccatttt 23266
to top
>gb|AC139476.3| Homo sapiens chromosome 16 clone RP11-341P6, complete sequence
          Length = 189057

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    gaaatgaggtgagatgtaatgtga 46
             |||||||||||||||| |||||||
Sbjct: 65561 gaaatgaggtgagatgaaatgtga 65538
to top
>gb|AC151714.3| Mus musculus BAC clone RP23-437A9 from chromosome 9, complete sequence
          Length = 217761

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   gccctccacaagaacacctt 318
             ||||||||||||||||||||
Sbjct: 57747 gccctccacaagaacacctt 57728
to top
>gb|AC010092.4| Homo sapiens BAC clone RP11-306M1 from 2, complete sequence
          Length = 140226

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    tatgatagaaaggaaatgag 30
             ||||||||||||||||||||
Sbjct: 50358 tatgatagaaaggaaatgag 50339
to top
>gb|AC136944.3| Homo sapiens chromosome 16 clone RP11-23E10, complete sequence
          Length = 142696

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    gaaatgaggtgagatgtaatgtga 46
             |||||||||||||||| |||||||
Sbjct: 97121 gaaatgaggtgagatgaaatgtga 97098
to top
>gb|AC133920.2| Homo sapiens chromosome 16 clone RP11-413O9, complete sequence
          Length = 197357

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 23     gaaatgaggtgagatgtaatgtga 46
              |||||||||||||||| |||||||
Sbjct: 164427 gaaatgaggtgagatgaaatgtga 164404
to top
>dbj|AB009054.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUL8
          Length = 83450

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   tcttatcaaaaacattgtct 185
             ||||||||||||||||||||
Sbjct: 23198 tcttatcaaaaacattgtct 23179
to top
>dbj|AK107520.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-F08, full
           insert sequence
          Length = 885

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 tacagtactcttatcaaaaa 177
           ||||||||||||||||||||
Sbjct: 833 tacagtactcttatcaaaaa 814
to top
>emb|BX324128.14| Zebrafish DNA sequence from clone DKEY-181O6 in linkage group 19,
              complete sequence
          Length = 139695

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 263    gtcatcaatcagtctctcaa 282
              ||||||||||||||||||||
Sbjct: 107478 gtcatcaatcagtctctcaa 107459


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,621,407
Number of Sequences: 3902068
Number of extensions: 5621407
Number of successful extensions: 102926
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102674
Number of HSP's gapped (non-prelim): 247
length of query: 631
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 608
effective length of database: 17,143,297,704
effective search space: 10423125004032
effective search space used: 10423125004032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top