ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31m08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB117990.1| Oryza sativa (japonica cultivar-group) bip102 mR... 125 2e-25
2dbj|AK073164.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
3dbj|AK099754.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 8e-25
4dbj|AK101143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 8e-25
5dbj|AB015431.1| Oryza sativa mRNA for SAR DNA binding protein, p... 123 8e-25
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 115 2e-22
7gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare str... 115 2e-22
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
9gb|AY106099.1| Zea mays PCO066535 mRNA sequence 107 5e-20
10gb|AY814548.1| Schistosoma japonicum SJCHGC02840 protein mRNA, c... 42 2.3
11emb|AL611966.11| Human DNA sequence from clone RP11-89K2 on chro... 42 2.3
12emb|BX511272.9| Zebrafish DNA sequence from clone DKEY-276L13 in... 42 2.3
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
14dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
15dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 42 2.3
16dbj|AK105740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
17ref|XM_757091.1| Ustilago maydis 521 hypothetical protein (UM060... 40 8.9
18gb|AC122251.4| Mus musculus BAC clone RP23-167J15 from chromosom... 40 8.9
19gb|AC133100.5| Mus musculus BAC clone RP23-98O11 from chromosome... 40 8.9
20emb|AL050342.42|HSDJ655K7 Human DNA sequence from clone RP4-655K... 40 8.9
21emb|AL031431.8|HS462O23 Human DNA sequence from clone RP3-462O23... 40 8.9
22gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 8.9
23gb|AC157373.3| Medicago truncatula chromosome 7 BAC clone mth2-1... 40 8.9
24ref|NG_002775.1| Homo sapiens keratin pseudogene (LOC147228) on ... 40 8.9
25tpg|BK001589.1| TPA: TPA_exp: Homo sapiens chromosome 17 distal ... 40 8.9
26gb|AC126352.6| Homo sapiens chromosome 17, clone CTD-2509K7, com... 40 8.9
27gb|AC022596.9|AC022596 Homo sapiens chromosome 17, clone RP11-21... 40 8.9
28emb|BX119954.10| Zebrafish DNA sequence from clone CH211-286O14,... 40 8.9
29emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, co... 40 8.9
30emb|BX001033.6| Zebrafish DNA sequence from clone CH211-286F4 in... 40 8.9
31gb|AC134614.4| Mus musculus BAC clone RP23-148D12 from 14, compl... 40 8.9
32gb|AC161878.3| Mus musculus BAC clone RP23-303B4 from chromosome... 40 8.9
33emb|AL928925.6| Mouse DNA sequence from clone RP23-405K7 on chro... 40 8.9 
>dbj|AB117990.1| Oryza sativa (japonica cultivar-group) bip102 mRNA for BRI1-KD
           interacting protein 102, partial cds
          Length = 806

 Score =  125 bits (63), Expect = 2e-25
 Identities = 149/177 (84%), Gaps = 3/177 (1%)
 Strand = Plus / Minus

                                                                       
Query: 481 cttctttggtgtttcttcagttgtttgcccgaccactagatctgctgctgggttgtaagt 540
           ||||||||| ||||||||||| | ||| || |  || ||||| || || || ||||| ||
Sbjct: 226 cttctttggagtttcttcagtggattgtccaagtaccagatcagccgcaggattgtatgt 167

                                                                       
Query: 541 tttagcgggagtgatcaaagcaccaccacccttc---cggtccttttcatacgcttcaat 597
            ||||| |||||||| ||||| ||| ||||||||   ||||||||||||||| |||| ||
Sbjct: 166 cttagcaggagtgattaaagccccagcacccttcttccggtccttttcatacacttctat 107

                                                                    
Query: 598 cttgggctttccttttgtggaaccagcagacctcccaagatctttaccctcaagaac 654
           ||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 106 cttgggctttcctttagtggaacctgcagacctgccaagttctttaccctcgagaac 50
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>dbj|AK073164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023B01, full
            insert sequence
          Length = 2147

 Score =  125 bits (63), Expect = 2e-25
 Identities = 149/177 (84%), Gaps = 3/177 (1%)
 Strand = Plus / Minus

                                                                        
Query: 481  cttctttggtgtttcttcagttgtttgcccgaccactagatctgctgctgggttgtaagt 540
            ||||||||| ||||||||||| | ||| || |  || ||||| || || || ||||| ||
Sbjct: 1565 cttctttggagtttcttcagtggattgtccaagtaccagatcagccgcaggattgtatgt 1506

                                                                        
Query: 541  tttagcgggagtgatcaaagcaccaccacccttc---cggtccttttcatacgcttcaat 597
             ||||| |||||||| ||||| ||| ||||||||   ||||||||||||||| |||| ||
Sbjct: 1505 cttagcaggagtgattaaagccccagcacccttcttccggtccttttcatacacttctat 1446

                                                                     
Query: 598  cttgggctttccttttgtggaaccagcagacctcccaagatctttaccctcaagaac 654
            ||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 1445 cttgggctttcctttagtggaacctgcagacctgccaagttctttaccctcgagaac 1389
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>dbj|AK099754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092O17, full
            insert sequence
          Length = 2340

 Score =  123 bits (62), Expect = 8e-25
 Identities = 177/214 (82%), Gaps = 6/214 (2%)
 Strand = Plus / Minus

                                                                        
Query: 447  cctcttggtgcttcctcttctttgaagccacctc---cttctttggtgtttcttcagttg 503
            ||||||| || |||||||||||||||||  | ||   ||||||||||||||||||||| |
Sbjct: 1727 cctcttgatgtttcctcttctttgaagcaccttcaggcttctttggtgtttcttcagtgg 1668

                                                                        
Query: 504  tttgcccgaccactagatctgctgctgggttgtaagttttagcgggagtgatcaaagcac 563
             ||| || |  || ||||| || || || ||||| || || || |||||||| ||||| |
Sbjct: 1667 attgtccaagtaccagatcagccgcaggattgtatgtcttggcaggagtgattaaagccc 1608

                                                                        
Query: 564  caccacccttc---cggtccttttcatacgcttcaatcttgggctttccttttgtggaac 620
            || ||||||||   ||||||||||||||| |||| |||||||||||||| || || ||||
Sbjct: 1607 cagcacccttcttccggtccttttcatacacttctatcttgggctttcccttagtagaac 1548

                                              
Query: 621  cagcagacctcccaagatctttaccctcaagaac 654
            | |||||||| ||||| |||||||||||||||||
Sbjct: 1547 ctgcagacctgccaagttctttaccctcaagaac 1514
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>dbj|AK101143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026N20, full
            insert sequence
          Length = 1882

 Score =  123 bits (62), Expect = 8e-25
 Identities = 177/214 (82%), Gaps = 6/214 (2%)
 Strand = Plus / Minus

                                                                        
Query: 447  cctcttggtgcttcctcttctttgaagccacctc---cttctttggtgtttcttcagttg 503
            ||||||| || |||||||||||||||||  | ||   ||||||||||||||||||||| |
Sbjct: 1612 cctcttgatgtttcctcttctttgaagcaccttcaggcttctttggtgtttcttcagtgg 1553

                                                                        
Query: 504  tttgcccgaccactagatctgctgctgggttgtaagttttagcgggagtgatcaaagcac 563
             ||| || |  || ||||| || || || ||||| || || || |||||||| ||||| |
Sbjct: 1552 attgtccaagtaccagatcagccgcaggattgtatgtcttggcaggagtgattaaagccc 1493

                                                                        
Query: 564  caccacccttc---cggtccttttcatacgcttcaatcttgggctttccttttgtggaac 620
            || ||||||||   ||||||||||||||| |||| |||||||||||||| || || ||||
Sbjct: 1492 cagcacccttcttccggtccttttcatacacttctatcttgggctttcccttagtagaac 1433

                                              
Query: 621  cagcagacctcccaagatctttaccctcaagaac 654
            | |||||||| ||||| |||||||||||||||||
Sbjct: 1432 ctgcagacctgccaagttctttaccctcaagaac 1399
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>dbj|AB015431.1| Oryza sativa mRNA for SAR DNA binding protein, partial cds
          Length = 1638

 Score =  123 bits (62), Expect = 8e-25
 Identities = 177/214 (82%), Gaps = 6/214 (2%)
 Strand = Plus / Minus

                                                                        
Query: 447  cctcttggtgcttcctcttctttgaagccacctc---cttctttggtgtttcttcagttg 503
            ||||||| || |||||||||||||||||  | ||   ||||||||||||||||||||| |
Sbjct: 1581 cctcttgatgtttcctcttctttgaagcaccttcaggcttctttggtgtttcttcagtgg 1522

                                                                        
Query: 504  tttgcccgaccactagatctgctgctgggttgtaagttttagcgggagtgatcaaagcac 563
             ||| || |  || ||||| || || || ||||| || || || |||||||| ||||| |
Sbjct: 1521 attgtccaagtaccagatcagccgcaggattgtatgtcttggcaggagtgattaaagccc 1462

                                                                        
Query: 564  caccacccttc---cggtccttttcatacgcttcaatcttgggctttccttttgtggaac 620
            || ||||||||   ||||||||||||||| |||| |||||||||||||| || || ||||
Sbjct: 1461 cagcacccttcttccggtccttttcatacacttctatcttgggctttcccttagtagaac 1402

                                              
Query: 621  cagcagacctcccaagatctttaccctcaagaac 654
            | |||||||| ||||| |||||||||||||||||
Sbjct: 1401 ctgcagacctgccaagttctttaccctcaagaac 1368
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  115 bits (58), Expect = 2e-22
 Identities = 102/116 (87%), Gaps = 3/116 (2%)
 Strand = Plus / Plus

                                                                            
Query: 542      ttagcgggagtgatcaaagcaccaccacccttc---cggtccttttcatacgcttcaatc 598
                ||||| |||||||| ||||| ||| ||||||||   ||||||||||||||| |||| |||
Sbjct: 13108942 ttagcaggagtgattaaagccccagcacccttcttccggtccttttcatacacttctatc 13109001

                                                                        
Query: 599      ttgggctttccttttgtggaaccagcagacctcccaagatctttaccctcaagaac 654
                |||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 13109002 ttgggctttcctttagtggaacctgcagacctgccaagttctttaccctcgagaac 13109057



 Score =  103 bits (52), Expect = 7e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                            
Query: 571      cttccggtccttttcatacgcttcaatcttgggctttccttttgtggaaccagcagacct 630
                ||||||||||||||||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 13101565 cttccggtccttttcatacacttctatcttgggctttcccttagtagaacctgcagacct 13101624

                                        
Query: 631      cccaagatctttaccctcaagaac 654
                 ||||| |||||||||||||||||
Sbjct: 13101625 gccaagttctttaccctcaagaac 13101648



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 50/58 (86%), Gaps = 3/58 (5%)
 Strand = Plus / Plus

                                                                          
Query: 447      cctcttggtgcttcctcttctttgaagccacctc---cttctttggtgtttcttcagt 501
                ||||||| || |||||||||||||||||  | ||   |||||||||||||||||||||
Sbjct: 13101208 cctcttgatgtttcctcttctttgaagcaccttcaggcttctttggtgtttcttcagt 13101265
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>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07,
              from chromosome 3, complete sequence
          Length = 151173

 Score =  115 bits (58), Expect = 2e-22
 Identities = 102/116 (87%), Gaps = 3/116 (2%)
 Strand = Plus / Minus

                                                                          
Query: 542    ttagcgggagtgatcaaagcaccaccacccttc---cggtccttttcatacgcttcaatc 598
              ||||| |||||||| ||||| ||| ||||||||   ||||||||||||||| |||| |||
Sbjct: 117696 ttagcaggagtgattaaagccccagcacccttcttccggtccttttcatacacttctatc 117637

                                                                      
Query: 599    ttgggctttccttttgtggaaccagcagacctcccaagatctttaccctcaagaac 654
              |||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 117636 ttgggctttcctttagtggaacctgcagacctgccaagttctttaccctcgagaac 117581



 Score =  103 bits (52), Expect = 7e-19
 Identities = 76/84 (90%)
 Strand = Plus / Minus

                                                                          
Query: 571    cttccggtccttttcatacgcttcaatcttgggctttccttttgtggaaccagcagacct 630
              ||||||||||||||||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 125073 cttccggtccttttcatacacttctatcttgggctttcccttagtagaacctgcagacct 125014

                                      
Query: 631    cccaagatctttaccctcaagaac 654
               ||||| |||||||||||||||||
Sbjct: 125013 gccaagttctttaccctcaagaac 124990



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 50/58 (86%), Gaps = 3/58 (5%)
 Strand = Plus / Minus

                                                                        
Query: 447    cctcttggtgcttcctcttctttgaagccacctc---cttctttggtgtttcttcagt 501
              ||||||| || |||||||||||||||||  | ||   |||||||||||||||||||||
Sbjct: 125430 cctcttgatgtttcctcttctttgaagcaccttcaggcttctttggtgtttcttcagt 125373
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  115 bits (58), Expect = 2e-22
 Identities = 102/116 (87%), Gaps = 3/116 (2%)
 Strand = Plus / Plus

                                                                            
Query: 542      ttagcgggagtgatcaaagcaccaccacccttc---cggtccttttcatacgcttcaatc 598
                ||||| |||||||| ||||| ||| ||||||||   ||||||||||||||| |||| |||
Sbjct: 13105717 ttagcaggagtgattaaagccccagcacccttcttccggtccttttcatacacttctatc 13105776

                                                                        
Query: 599      ttgggctttccttttgtggaaccagcagacctcccaagatctttaccctcaagaac 654
                |||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 13105777 ttgggctttcctttagtggaacctgcagacctgccaagttctttaccctcgagaac 13105832



 Score =  103 bits (52), Expect = 7e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                            
Query: 571      cttccggtccttttcatacgcttcaatcttgggctttccttttgtggaaccagcagacct 630
                ||||||||||||||||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 13098340 cttccggtccttttcatacacttctatcttgggctttcccttagtagaacctgcagacct 13098399

                                        
Query: 631      cccaagatctttaccctcaagaac 654
                 ||||| |||||||||||||||||
Sbjct: 13098400 gccaagttctttaccctcaagaac 13098423



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 50/58 (86%), Gaps = 3/58 (5%)
 Strand = Plus / Plus

                                                                          
Query: 447      cctcttggtgcttcctcttctttgaagccacctc---cttctttggtgtttcttcagt 501
                ||||||| || |||||||||||||||||  | ||   |||||||||||||||||||||
Sbjct: 13097983 cctcttgatgtttcctcttctttgaagcaccttcaggcttctttggtgtttcttcagt 13098040
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>gb|AY106099.1| Zea mays PCO066535 mRNA sequence
          Length = 1500

 Score =  107 bits (54), Expect = 5e-20
 Identities = 119/140 (85%), Gaps = 3/140 (2%)
 Strand = Plus / Minus

                                                                       
Query: 518 agatctgctgctgggttgtaagttttagcgggagtgatcaaagcaccaccaccct---tc 574
           ||||| ||||| |||||||| || ||||| |||||  | ||||| ||| ||||||   ||
Sbjct: 883 agatcagctgcagggttgtatgtcttagcaggagttgttaaagccccagcaccctgcttc 824

                                                                       
Query: 575 cggtccttttcatacgcttcaatcttgggctttccttttgtggaaccagcagacctccca 634
           ||||||||||||||| |||| ||||||||||| || |||||||||||||||||  |||||
Sbjct: 823 cggtccttttcatacacttctatcttgggcttcccctttgtggaaccagcagatttccca 764

                               
Query: 635 agatctttaccctcaagaac 654
           || ||| |||||||||||||
Sbjct: 763 agttctctaccctcaagaac 744



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 42/47 (89%), Gaps = 3/47 (6%)
 Strand = Plus / Minus

                                                          
Query: 458 ttcctcttctttgaagccacctc---cttctttggtgtttcttcagt 501
           |||||||||||||||||||  ||   |||||||||||||||||||||
Sbjct: 937 ttcctcttctttgaagccaattctgacttctttggtgtttcttcagt 891
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>gb|AY814548.1| Schistosoma japonicum SJCHGC02840 protein mRNA, complete cds
          Length = 1081

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 49  gtcgctgctagtcctaatgtg 69
           |||||||||||||||||||||
Sbjct: 620 gtcgctgctagtcctaatgtg 640
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>emb|AL611966.11| Human DNA sequence from clone RP11-89K2 on chromosome 1, complete
            sequence
          Length = 68019

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 555  tcaaagcaccaccacccttccggtccttt 583
            ||||||||||||| ||||||| |||||||
Sbjct: 2028 tcaaagcaccaccccccttccagtccttt 2056
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>emb|BX511272.9| Zebrafish DNA sequence from clone DKEY-276L13 in linkage group 6,
             complete sequence
          Length = 208912

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 274   atcagctgcaggggtctcctc 294
             |||||||||||||||||||||
Sbjct: 32061 atcagctgcaggggtctcctc 32041
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 328      gctagcatcagcatcagctgcggga 352
                ||||||||||||||||||| |||||
Sbjct: 40434417 gctagcatcagcatcagctacggga 40434393
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>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0592G05
          Length = 146220

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 328   gctagcatcagcatcagctgcggga 352
             ||||||||||||||||||| |||||
Sbjct: 85658 gctagcatcagcatcagctacggga 85634
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 441     gttcttcctcttggtgcttcc 461
               |||||||||||||||||||||
Sbjct: 1435713 gttcttcctcttggtgcttcc 1435693
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>dbj|AK105740.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-A06, full
            insert sequence
          Length = 2854

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 328  gctagcatcagcatcagctgcggga 352
            ||||||||||||||||||| |||||
Sbjct: 2468 gctagcatcagcatcagctacggga 2444
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>ref|XM_757091.1| Ustilago maydis 521 hypothetical protein (UM06037.1) partial mRNA
          Length = 1962

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 327  cgctagcatcagcatcagct 346
            ||||||||||||||||||||
Sbjct: 1103 cgctagcatcagcatcagct 1122
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>gb|AC122251.4| Mus musculus BAC clone RP23-167J15 from chromosome 14, complete sequence
          Length = 204588

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 595    aatcttgggctttccttttgtgga 618
              |||||||||||||||||| |||||
Sbjct: 176803 aatcttgggctttcctttggtgga 176780
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>gb|AC133100.5| Mus musculus BAC clone RP23-98O11 from chromosome 19, complete
            sequence
          Length = 204855

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 482  ttctttggtgtttcttcagt 501
            ||||||||||||||||||||
Sbjct: 5409 ttctttggtgtttcttcagt 5390
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>emb|AL050342.42|HSDJ655K7 Human DNA sequence from clone RP4-655K7 on chromosome 1p35.3-36.13
            Contains part of a gene encoding a novel protein,,
            complete sequence
          Length = 116857

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 487  tggtgtttcttcagttgtttgccc 510
            ||||| ||||||||||||||||||
Sbjct: 9923 tggtgattcttcagttgtttgccc 9946
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>emb|AL031431.8|HS462O23 Human DNA sequence from clone RP3-462O23 on chromosome 1p35.1-36.12
              Contains the 3' end of the gene for sister-of-mammalian
              grainyhead (SOM), a novel gene (LOC90529) and a novel gene
              (DJ462O23.2), complete sequence
          Length = 154154

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     gaatggcaagtcccaaaact 105
              ||||||||||||||||||||
Sbjct: 131116 gaatggcaagtcccaaaact 131097
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 489     gtgtttcttcagttgtttgc 508
               ||||||||||||||||||||
Sbjct: 2811041 gtgtttcttcagttgtttgc 2811060
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>gb|AC157373.3| Medicago truncatula chromosome 7 BAC clone mth2-108g9, complete
             sequence
          Length = 95326

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 444   cttcctcttggtgcttcctcttct 467
             ||||||||||||| ||||||||||
Sbjct: 17596 cttcctcttggtgtttcctcttct 17573
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>ref|NG_002775.1| Homo sapiens keratin pseudogene (LOC147228) on chromosome 17
          Length = 4187

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 629  ctcccaagatctttaccctc 648
            ||||||||||||||||||||
Sbjct: 3257 ctcccaagatctttaccctc 3238
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>tpg|BK001589.1| TPA: TPA_exp: Homo sapiens chromosome 17 distal SMS-REP low-copy repeat,
              genomic sequence
          Length = 176482

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 629    ctcccaagatctttaccctc 648
              ||||||||||||||||||||
Sbjct: 154965 ctcccaagatctttaccctc 154984
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>gb|AC126352.6| Homo sapiens chromosome 17, clone CTD-2509K7, complete sequence
          Length = 211403

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 629   ctcccaagatctttaccctc 648
             ||||||||||||||||||||
Sbjct: 24090 ctcccaagatctttaccctc 24071
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>gb|AC022596.9|AC022596 Homo sapiens chromosome 17, clone RP11-219A15, complete sequence
          Length = 192337

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 629   ctcccaagatctttaccctc 648
             ||||||||||||||||||||
Sbjct: 32129 ctcccaagatctttaccctc 32110
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>emb|BX119954.10| Zebrafish DNA sequence from clone CH211-286O14, complete sequence
          Length = 155287

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 489   gtgtttcttcagttgtttgc 508
             ||||||||||||||||||||
Sbjct: 86760 gtgtttcttcagttgtttgc 86741
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>emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, complete sequence
          Length = 267826

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 488   ggtgtttcttcagttgtttg 507
             ||||||||||||||||||||
Sbjct: 62288 ggtgtttcttcagttgtttg 62307
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>emb|BX001033.6| Zebrafish DNA sequence from clone CH211-286F4 in linkage group 7,
             complete sequence
          Length = 144689

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 487   tggtgtttcttcagttgttt 506
             ||||||||||||||||||||
Sbjct: 91379 tggtgtttcttcagttgttt 91398
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>gb|AC134614.4| Mus musculus BAC clone RP23-148D12 from 14, complete sequence
          Length = 209278

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 595   aatcttgggctttccttttgtgga 618
             |||||||||||||||||| |||||
Sbjct: 24398 aatcttgggctttcctttggtgga 24375
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>gb|AC161878.3| Mus musculus BAC clone RP23-303B4 from chromosome 1, complete sequence
          Length = 169556

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    aagtcccaaaactttcagac 112
             ||||||||||||||||||||
Sbjct: 28231 aagtcccaaaactttcagac 28212
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>emb|AL928925.6| Mouse DNA sequence from clone RP23-405K7 on chromosome 2, complete
              sequence
          Length = 145382

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 482    ttctttggtgtttcttcagt 501
              ||||||||||||||||||||
Sbjct: 118999 ttctttggtgtttcttcagt 119018


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,518,710
Number of Sequences: 3902068
Number of extensions: 4518710
Number of successful extensions: 81906
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81705
Number of HSP's gapped (non-prelim): 195
length of query: 654
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 631
effective length of database: 17,143,297,704
effective search space: 10817420851224
effective search space used: 10817420851224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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