| Clone Name | rbaal2b10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY110853.1| Zea mays CL10_1 mRNA sequence Length = 2131 Score = 274 bits (138), Expect = 3e-70 Identities = 249/286 (87%) Strand = Plus / Minus Query: 378 gtcgcccccatgaacaccttctgcagagtctggaaggccttgtgcgctcctctgcaggac 437 ||||| |||||||| |||||||||||| ||||||| || || | |||||| |||||||| Sbjct: 1695 gtcgctcccatgaataccttctgcagattctggaatgcattatatgctcctttgcaggac 1636 Query: 438 gagcatttgagcgtgtgctgctcgtatctgtccagcatctctcgctttgaaaggaccgta 497 |||||||| | ||||||||||||||||||||| |||||||| |||||||||||||| || Sbjct: 1635 gagcatttcaacgtgtgctgctcgtatctgtctagcatctcgcgctttgaaaggacggtg 1576 Query: 498 gaaggcaatgcatcttgggtagggcttccgtaccagtcaggctggctattgccgaatttc 557 ||||||||||| ||||| ||||| |||| |||| || |||||||||||||| |||||| Sbjct: 1575 gaaggcaatgcttcttgtgtaggatttccaaaccactccggctggctattgccaaatttc 1516 Query: 558 cttagccatgcccggaatgccaagacaaatcggtcggcctgtgtgggcgtgaatgtgagc 617 |||||||||| |||||||| || |||||||| || || ||||||||||||||||||| | Sbjct: 1515 cttagccatgtgcggaatgctaaaacaaatcgatcagcttgtgtgggcgtgaatgtgatc 1456 Query: 618 tttgtgtactgctgattaacatctgcagacgactccttggatgcag 663 ||||||||||||||||||| ||| | ||| |||||||||| ||||| Sbjct: 1455 tttgtgtactgctgattaatatccgtagaagactccttggttgcag 1410 Score = 42.1 bits (21), Expect = 2.3 Identities = 42/49 (85%) Strand = Plus / Minus Query: 221 tcaatcaatgtcagcgtgcacgtagtctacaaacacgaaatgcttctgg 269 ||||||||||||||| |||||||| || || || || |||| ||||||| Sbjct: 1852 tcaatcaatgtcagcatgcacgtaatccacgaatacaaaattcttctgg 1804
>gb|U77345.1|ZMU77345 Zea mays lethal leaf-spot 1 (lls1) mRNA, partial cds Length = 1683 Score = 274 bits (138), Expect = 3e-70 Identities = 249/286 (87%) Strand = Plus / Minus Query: 378 gtcgcccccatgaacaccttctgcagagtctggaaggccttgtgcgctcctctgcaggac 437 ||||| |||||||| |||||||||||| ||||||| || || | |||||| |||||||| Sbjct: 1248 gtcgctcccatgaataccttctgcagattctggaatgcattatatgctcctttgcaggac 1189 Query: 438 gagcatttgagcgtgtgctgctcgtatctgtccagcatctctcgctttgaaaggaccgta 497 |||||||| | ||||||||||||||||||||| |||||||| |||||||||||||| || Sbjct: 1188 gagcatttcaacgtgtgctgctcgtatctgtctagcatctcgcgctttgaaaggacggtg 1129 Query: 498 gaaggcaatgcatcttgggtagggcttccgtaccagtcaggctggctattgccgaatttc 557 ||||||||||| ||||| ||||| |||| |||| || |||||||||||||| |||||| Sbjct: 1128 gaaggcaatgcttcttgtgtaggatttccaaaccactccggctggctattgccaaatttc 1069 Query: 558 cttagccatgcccggaatgccaagacaaatcggtcggcctgtgtgggcgtgaatgtgagc 617 |||||||||| |||||||| || |||||||| || || ||||||||||||||||||| | Sbjct: 1068 cttagccatgtgcggaatgctaaaacaaatcgatcagcttgtgtgggcgtgaatgtgatc 1009 Query: 618 tttgtgtactgctgattaacatctgcagacgactccttggatgcag 663 ||||||||||||||||||| ||| | ||| |||||||||| ||||| Sbjct: 1008 tttgtgtactgctgattaatatccgtagaagactccttggttgcag 963 Score = 42.1 bits (21), Expect = 2.3 Identities = 42/49 (85%) Strand = Plus / Minus Query: 221 tcaatcaatgtcagcgtgcacgtagtctacaaacacgaaatgcttctgg 269 ||||||||||||||| |||||||| || || || || |||| ||||||| Sbjct: 1405 tcaatcaatgtcagcatgcacgtaatccacgaatacaaaattcttctgg 1357
>ref|XM_470215.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1548 Score = 252 bits (127), Expect = 1e-63 Identities = 289/343 (84%) Strand = Plus / Minus Query: 321 agcaatatcctgagctgaacatccgcagggatcccggatgtcacgccgaacaccaccgtc 380 ||||||| |||| ||||||||||||||| ||||| | || | | |||| |||| ||| Sbjct: 1448 agcaataatctgaactgaacatccgcaggaatcccagcagttgcacagaacgccactgtc 1389 Query: 381 gcccccatgaacaccttctgcagagtctggaaggccttgtgcgctcctctgcaggacgag 440 || |||||||| ||||| ||||||||||||||||| |||| || ||| |||| || ||| Sbjct: 1388 gctcccatgaagaccttttgcagagtctggaaggcgttgtatgcccctttgcaagatgag 1329 Query: 441 catttgagcgtgtgctgctcgtatctgtccagcatctctcgctttgaaaggaccgtagaa 500 ||||| || ||||||||||| ||||| || |||||||| |||||||||||||| || ||| Sbjct: 1328 catttcagtgtgtgctgctcatatctatctagcatctcacgctttgaaaggacagtggaa 1269 Query: 501 ggcaatgcatcttgggtagggcttccgtaccagtcaggctggctattgccgaatttcctt 560 ||||| | |||||| |||| |||| |||||||||| ||||| || || ||||||||| Sbjct: 1268 ggcaacacttcttggctaggatttccaaaccagtcaggttggctgttaccaaatttcctt 1209 Query: 561 agccatgcccggaatgccaagacaaatcggtcggcctgtgtgggcgtgaatgtgagcttt 620 |||||||||||||||||||| ||||| ||||| ||||| ||||| || || |||| |||| Sbjct: 1208 agccatgcccggaatgccaaaacaaaacggtcagcctgcgtgggtgtaaacgtgatcttt 1149 Query: 621 gtgtactgctgattaacatctgcagacgactccttggatgcag 663 |||||||||||||||| ||||||||| |||||||| ||||||| Sbjct: 1148 gtgtactgctgattaatatctgcagaagactccttcgatgcag 1106
>dbj|AK120554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130M21, full insert sequence Length = 2056 Score = 252 bits (127), Expect = 1e-63 Identities = 289/343 (84%) Strand = Plus / Minus Query: 321 agcaatatcctgagctgaacatccgcagggatcccggatgtcacgccgaacaccaccgtc 380 ||||||| |||| ||||||||||||||| ||||| | || | | |||| |||| ||| Sbjct: 1768 agcaataatctgaactgaacatccgcaggaatcccagcagttgcacagaacgccactgtc 1709 Query: 381 gcccccatgaacaccttctgcagagtctggaaggccttgtgcgctcctctgcaggacgag 440 || |||||||| ||||| ||||||||||||||||| |||| || ||| |||| || ||| Sbjct: 1708 gctcccatgaagaccttttgcagagtctggaaggcgttgtatgcccctttgcaagatgag 1649 Query: 441 catttgagcgtgtgctgctcgtatctgtccagcatctctcgctttgaaaggaccgtagaa 500 ||||| || ||||||||||| ||||| || |||||||| |||||||||||||| || ||| Sbjct: 1648 catttcagtgtgtgctgctcatatctatctagcatctcacgctttgaaaggacagtggaa 1589 Query: 501 ggcaatgcatcttgggtagggcttccgtaccagtcaggctggctattgccgaatttcctt 560 ||||| | |||||| |||| |||| |||||||||| ||||| || || ||||||||| Sbjct: 1588 ggcaacacttcttggctaggatttccaaaccagtcaggttggctgttaccaaatttcctt 1529 Query: 561 agccatgcccggaatgccaagacaaatcggtcggcctgtgtgggcgtgaatgtgagcttt 620 |||||||||||||||||||| ||||| ||||| ||||| ||||| || || |||| |||| Sbjct: 1528 agccatgcccggaatgccaaaacaaaacggtcagcctgcgtgggtgtaaacgtgatcttt 1469 Query: 621 gtgtactgctgattaacatctgcagacgactccttggatgcag 663 |||||||||||||||| ||||||||| |||||||| ||||||| Sbjct: 1468 gtgtactgctgattaatatctgcagaagactccttcgatgcag 1426
>dbj|AK111974.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-D01, full insert sequence Length = 2098 Score = 252 bits (127), Expect = 1e-63 Identities = 289/343 (84%) Strand = Plus / Minus Query: 321 agcaatatcctgagctgaacatccgcagggatcccggatgtcacgccgaacaccaccgtc 380 ||||||| |||| ||||||||||||||| ||||| | || | | |||| |||| ||| Sbjct: 1811 agcaataatctgaactgaacatccgcaggaatcccagcagttgcacagaacgccactgtc 1752 Query: 381 gcccccatgaacaccttctgcagagtctggaaggccttgtgcgctcctctgcaggacgag 440 || |||||||| ||||| ||||||||||||||||| |||| || ||| |||| || ||| Sbjct: 1751 gctcccatgaagaccttttgcagagtctggaaggcgttgtatgcccctttgcaagatgag 1692 Query: 441 catttgagcgtgtgctgctcgtatctgtccagcatctctcgctttgaaaggaccgtagaa 500 ||||| || ||||||||||| ||||| || |||||||| |||||||||||||| || ||| Sbjct: 1691 catttcagtgtgtgctgctcatatctatctagcatctcacgctttgaaaggacagtggaa 1632 Query: 501 ggcaatgcatcttgggtagggcttccgtaccagtcaggctggctattgccgaatttcctt 560 ||||| | |||||| |||| |||| |||||||||| ||||| || || ||||||||| Sbjct: 1631 ggcaacacttcttggctaggatttccaaaccagtcaggttggctgttaccaaatttcctt 1572 Query: 561 agccatgcccggaatgccaagacaaatcggtcggcctgtgtgggcgtgaatgtgagcttt 620 |||||||||||||||||||| ||||| ||||| ||||| ||||| || || |||| |||| Sbjct: 1571 agccatgcccggaatgccaaaacaaaacggtcagcctgcgtgggtgtaaacgtgatcttt 1512 Query: 621 gtgtactgctgattaacatctgcagacgactccttggatgcag 663 |||||||||||||||| ||||||||| |||||||| ||||||| Sbjct: 1511 gtgtactgctgattaatatctgcagaagactccttcgatgcag 1469
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 167 bits (84), Expect = 6e-38 Identities = 159/184 (86%) Strand = Plus / Minus Query: 480 cgctttgaaaggaccgtagaaggcaatgcatcttgggtagggcttccgtaccagtcaggc 539 |||||||||||||| || |||||||| | |||||| |||| |||| |||||||||| Sbjct: 2560992 cgctttgaaaggacagtggaaggcaacacttcttggctaggatttccaaaccagtcaggt 2560933 Query: 540 tggctattgccgaatttccttagccatgcccggaatgccaagacaaatcggtcggcctgt 599 ||||| || || ||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 2560932 tggctgttaccaaatttccttagccatgcccggaatgccaaaacaaaacggtcagcctgc 2560873 Query: 600 gtgggcgtgaatgtgagctttgtgtactgctgattaacatctgcagacgactccttggat 659 ||||| || || |||| |||||||||||||||||||| ||||||||| |||||||| ||| Sbjct: 2560872 gtgggtgtaaacgtgatctttgtgtactgctgattaatatctgcagaagactccttcgat 2560813 Query: 660 gcag 663 |||| Sbjct: 2560812 gcag 2560809 Score = 89.7 bits (45), Expect = 1e-14 Identities = 129/157 (82%) Strand = Plus / Minus Query: 321 agcaatatcctgagctgaacatccgcagggatcccggatgtcacgccgaacaccaccgtc 380 ||||||| |||| ||||||||||||||| ||||| | || | | |||| |||| ||| Sbjct: 2561794 agcaataatctgaactgaacatccgcaggaatcccagcagttgcacagaacgccactgtc 2561735 Query: 381 gcccccatgaacaccttctgcagagtctggaaggccttgtgcgctcctctgcaggacgag 440 || |||||||| ||||| ||||||||||||||||| |||| || ||| |||| || ||| Sbjct: 2561734 gctcccatgaagaccttttgcagagtctggaaggcgttgtatgcccctttgcaagatgag 2561675 Query: 441 catttgagcgtgtgctgctcgtatctgtccagcatct 477 ||||| || ||||||||||| ||||| || ||||||| Sbjct: 2561674 catttcagtgtgtgctgctcatatctatctagcatct 2561638
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 167 bits (84), Expect = 6e-38 Identities = 159/184 (86%) Strand = Plus / Plus Query: 480 cgctttgaaaggaccgtagaaggcaatgcatcttgggtagggcttccgtaccagtcaggc 539 |||||||||||||| || |||||||| | |||||| |||| |||| |||||||||| Sbjct: 109102 cgctttgaaaggacagtggaaggcaacacttcttggctaggatttccaaaccagtcaggt 109161 Query: 540 tggctattgccgaatttccttagccatgcccggaatgccaagacaaatcggtcggcctgt 599 ||||| || || ||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 109162 tggctgttaccaaatttccttagccatgcccggaatgccaaaacaaaacggtcagcctgc 109221 Query: 600 gtgggcgtgaatgtgagctttgtgtactgctgattaacatctgcagacgactccttggat 659 ||||| || || |||| |||||||||||||||||||| ||||||||| |||||||| ||| Sbjct: 109222 gtgggtgtaaacgtgatctttgtgtactgctgattaatatctgcagaagactccttcgat 109281 Query: 660 gcag 663 |||| Sbjct: 109282 gcag 109285 Score = 89.7 bits (45), Expect = 1e-14 Identities = 129/157 (82%) Strand = Plus / Plus Query: 321 agcaatatcctgagctgaacatccgcagggatcccggatgtcacgccgaacaccaccgtc 380 ||||||| |||| ||||||||||||||| ||||| | || | | |||| |||| ||| Sbjct: 108300 agcaataatctgaactgaacatccgcaggaatcccagcagttgcacagaacgccactgtc 108359 Query: 381 gcccccatgaacaccttctgcagagtctggaaggccttgtgcgctcctctgcaggacgag 440 || |||||||| ||||| ||||||||||||||||| |||| || ||| |||| || ||| Sbjct: 108360 gctcccatgaagaccttttgcagagtctggaaggcgttgtatgcccctttgcaagatgag 108419 Query: 441 catttgagcgtgtgctgctcgtatctgtccagcatct 477 ||||| || ||||||||||| ||||| || ||||||| Sbjct: 108420 catttcagtgtgtgctgctcatatctatctagcatct 108456
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 167 bits (84), Expect = 6e-38 Identities = 159/184 (86%) Strand = Plus / Minus Query: 480 cgctttgaaaggaccgtagaaggcaatgcatcttgggtagggcttccgtaccagtcaggc 539 |||||||||||||| || |||||||| | |||||| |||| |||| |||||||||| Sbjct: 2561102 cgctttgaaaggacagtggaaggcaacacttcttggctaggatttccaaaccagtcaggt 2561043 Query: 540 tggctattgccgaatttccttagccatgcccggaatgccaagacaaatcggtcggcctgt 599 ||||| || || ||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 2561042 tggctgttaccaaatttccttagccatgcccggaatgccaaaacaaaacggtcagcctgc 2560983 Query: 600 gtgggcgtgaatgtgagctttgtgtactgctgattaacatctgcagacgactccttggat 659 ||||| || || |||| |||||||||||||||||||| ||||||||| |||||||| ||| Sbjct: 2560982 gtgggtgtaaacgtgatctttgtgtactgctgattaatatctgcagaagactccttcgat 2560923 Query: 660 gcag 663 |||| Sbjct: 2560922 gcag 2560919 Score = 89.7 bits (45), Expect = 1e-14 Identities = 129/157 (82%) Strand = Plus / Minus Query: 321 agcaatatcctgagctgaacatccgcagggatcccggatgtcacgccgaacaccaccgtc 380 ||||||| |||| ||||||||||||||| ||||| | || | | |||| |||| ||| Sbjct: 2561904 agcaataatctgaactgaacatccgcaggaatcccagcagttgcacagaacgccactgtc 2561845 Query: 381 gcccccatgaacaccttctgcagagtctggaaggccttgtgcgctcctctgcaggacgag 440 || |||||||| ||||| ||||||||||||||||| |||| || ||| |||| || ||| Sbjct: 2561844 gctcccatgaagaccttttgcagagtctggaaggcgttgtatgcccctttgcaagatgag 2561785 Query: 441 catttgagcgtgtgctgctcgtatctgtccagcatct 477 ||||| || ||||||||||| ||||| || ||||||| Sbjct: 2561784 catttcagtgtgtgctgctcatatctatctagcatct 2561748
>gb|U77346.1|ZMU77346 Zea mays lethal leaf-spot 1 (lls-1) gene, partial cds; and unknown gene Length = 7129 Score = 159 bits (80), Expect = 1e-35 Identities = 158/184 (85%) Strand = Plus / Minus Query: 480 cgctttgaaaggaccgtagaaggcaatgcatcttgggtagggcttccgtaccagtcaggc 539 |||||||||||||| || ||||||||||| ||||| ||||| |||| |||| || ||| Sbjct: 6393 cgctttgaaaggacggtggaaggcaatgcttcttgtgtaggatttccaaaccactccggc 6334 Query: 540 tggctattgccgaatttccttagccatgcccggaatgccaagacaaatcggtcggcctgt 599 ||||||||||| |||||||||||||| | ||| |||| || |||||||| || || ||| Sbjct: 6333 tggctattgccaaatttccttagccacgtgcggcatgctaaaacaaatcgatcagcttgt 6274 Query: 600 gtgggcgtgaatgtgagctttgtgtactgctgattaacatctgcagacgactccttggat 659 |||||||||||||||| |||||||||||||||||||| ||| | ||| |||||||||| | Sbjct: 6273 gtgggcgtgaatgtgatctttgtgtactgctgattaatatccgtagaagactccttggtt 6214 Query: 660 gcag 663 |||| Sbjct: 6213 gcag 6210 Score = 79.8 bits (40), Expect = 1e-11 Identities = 85/100 (85%) Strand = Plus / Minus Query: 378 gtcgcccccatgaacaccttctgcagagtctggaaggccttgtgcgctcctctgcaggac 437 ||||| |||||||| |||||||||||| ||||||| || || | |||||| |||| ||| Sbjct: 7020 gtcgctcccatgaataccttctgcagattctggaaagcattatatgctcctttgcaagac 6961 Query: 438 gagcatttgagcgtgtgctgctcgtatctgtccagcatct 477 |||||||| | || | |||||||||||||||| ||||||| Sbjct: 6960 gagcatttcaacgagagctgctcgtatctgtctagcatct 6921
>ref|NM_114357.4| Arabidopsis thaliana ACD1 (ACCELERATED CELL DEATH 1); oxidoreductase AT3G44880 (ACD1) mRNA, complete cds Length = 1984 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 582 acaaatcggtcggcctgtgtgggcgtgaatgtgagctttgtgtactg 628 ||||| ||||| ||||| || || ||||||||||||||||||||||| Sbjct: 1513 acaaaacggtctgcctgggttggagtgaatgtgagctttgtgtactg 1467
>gb|AY443350.1| Canine distemper virus isolate 00-2601, complete genome Length = 15690 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccct 218 ||||||||||||||||||||||||||| Sbjct: 6069 acaaaaataactcatgttgatctccct 6095
>gb|AY395984.1| Canine distemper virus 00-2601 fusion protein (F) gene, complete cds Length = 1989 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccct 218 ||||||||||||||||||||||||||| Sbjct: 1135 acaaaaataactcatgttgatctccct 1161
>emb|AL391254.2|ATF28D10 Arabidopsis thaliana DNA chromosome 3, BAC clone F28D10 Length = 49890 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 582 acaaatcggtcggcctgtgtgggcgtgaatgtgagctttgtgtactg 628 ||||| ||||| ||||| || || ||||||||||||||||||||||| Sbjct: 26352 acaaaacggtctgcctgggttggagtgaatgtgagctttgtgtactg 26306
>gb|AY093092.1| Arabidopsis thaliana lethal leaf-spot 1 homolog Lls1 (At3g44880) mRNA, complete cds Length = 1737 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 582 acaaatcggtcggcctgtgtgggcgtgaatgtgagctttgtgtactg 628 ||||| ||||| ||||| || || ||||||||||||||||||||||| Sbjct: 1298 acaaaacggtctgcctgggttggagtgaatgtgagctttgtgtactg 1252
>gb|AF378705.1|AF378705 Canine distemper virus strain Onderstepoort, complete genome Length = 15690 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccct 218 ||||||||||||||||||||||||||| Sbjct: 6069 acaaaaataactcatgttgatctccct 6095
>gb|AY344061.1| Arabidopsis thaliana accelerated cell death 1 (ACD1) mRNA, complete cds Length = 1614 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 582 acaaatcggtcggcctgtgtgggcgtgaatgtgagctttgtgtactg 628 ||||| ||||| ||||| || || ||||||||||||||||||||||| Sbjct: 1250 acaaaacggtctgcctgggttggagtgaatgtgagctttgtgtactg 1204
>emb|BX825426.1|CNS0A525 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL36ZD05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1035 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 582 acaaatcggtcggcctgtgtgggcgtgaatgtgagctttgtgtactg 628 ||||| ||||| ||||| || || ||||||||||||||||||||||| Sbjct: 562 acaaaacggtctgcctgggttggagtgaatgtgagctttgtgtactg 516
>emb|BX824848.1|CNS0A4QI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH77ZB11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1777 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 582 acaaatcggtcggcctgtgtgggcgtgaatgtgagctttgtgtactg 628 ||||| ||||| ||||| || || ||||||||||||||||||||||| Sbjct: 1364 acaaaacggtctgcctgggttggagtgaatgtgagctttgtgtactg 1318
>gb|U77347.1|ATU77347 Arabidopsis thaliana lethal leaf-spot 1 homolog (Lls1) mRNA, partial cds Length = 1977 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 582 acaaatcggtcggcctgtgtgggcgtgaatgtgagctttgtgtactg 628 ||||| ||||| ||||| || || ||||||||||||||||||||||| Sbjct: 1515 acaaaacggtctgcctgggttggagtgaatgtgagctttgtgtactg 1469
>emb|AJ007711.1|CDI7711 canine distemper virus F gene Length = 2043 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccc 217 |||||||||||||||||||||||||| Sbjct: 1214 acaaaaataactcatgttgatctccc 1239
>gb|AC126007.16| Medicago truncatula clone mth2-11o4, complete sequence Length = 106747 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 573 aatgccaagacaaatcggtcggcctgtgtgggcgtgaatgtgagctttgtgtactg 628 |||||||| ||||| || ||||||||||| || ||||| ||||| |||||||||| Sbjct: 26123 aatgccaacacaaaacgatcggcctgtgttggtgtgaaggtgaggcttgtgtactg 26068
>emb|X65509.1|CDVFP Canine distemper virus RNA for fusion protein Length = 2188 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatct 214 ||||||||||||||||||||||| Sbjct: 1208 acaaaaataactcatgttgatct 1230
>gb|AF305419.1|AF305419 Canine distemper virus, isolate Onderstepoort complete genome Length = 15690 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatct 214 ||||||||||||||||||||||| Sbjct: 6069 acaaaaataactcatgttgatct 6091
>gb|AF014953.1|AF014953 Canine distemper virus, complete genome Length = 15690 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatct 214 ||||||||||||||||||||||| Sbjct: 6069 acaaaaataactcatgttgatct 6091
>gb|M21849.1|CADFP Canine distemper virus fusion protein (F) mRNA, complete cds Length = 2197 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatct 214 ||||||||||||||||||||||| Sbjct: 1220 acaaaaataactcatgttgatct 1242
>gb|AY964114.1| Canine distemper virus isolate 25259 fusion protein and hemagglutinin genes, complete cds Length = 3968 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccc 217 |||| ||||||||||||||||||||| Sbjct: 1135 acaagaataactcatgttgatctccc 1160
>gb|AY964112.1| Canine distemper virus isolate 21261 fusion protein and hemagglutinin genes, complete cds Length = 3968 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccc 217 |||| ||||||||||||||||||||| Sbjct: 1135 acaagaataactcatgttgatctccc 1160
>gb|AY964110.1| Canine distemper virus isolate 19876 fusion protein and hemagglutinin genes, complete cds Length = 3968 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccc 217 |||||||||||||||||||| ||||| Sbjct: 1135 acaaaaataactcatgttgacctccc 1160
>gb|AY964108.1| Canine distemper virus isolate 18133 fusion protein and hemagglutinin genes, complete cds Length = 3968 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccc 217 |||| ||||||||||||||||||||| Sbjct: 1135 acaagaataactcatgttgatctccc 1160
>gb|AY649446.1| Canine distemper virus isolate 01-2689, complete genome Length = 15690 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccc 217 ||||||||||| |||||||||||||| Sbjct: 6069 acaaaaataacccatgttgatctccc 6094
>gb|AY542312.2| Canine distemper virus isolate 98-2646, complete genome Length = 15690 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccc 217 ||||||||||| |||||||||||||| Sbjct: 6069 acaaaaataacccatgttgatctccc 6094
>gb|AY466011.2| Canine distemper virus isolate 98-2654, complete genome Length = 15690 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccc 217 ||||||||||| |||||||||||||| Sbjct: 6069 acaaaaataacccatgttgatctccc 6094
>gb|AY445077.2| Canine distemper virus isolate 98-2645, complete genome Length = 15690 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccc 217 ||||||||||| |||||||||||||| Sbjct: 6069 acaaaaataacccatgttgatctccc 6094
>gb|AC008894.9| Homo sapiens chromosome 19 clone CTD-2231E14, complete sequence Length = 112067 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 172 ccacaccacaccacatcctcac 193 |||||||||||||||||||||| Sbjct: 21389 ccacaccacaccacatcctcac 21410
>gb|AF164967.1|AF164967 Canine distemper virus strain A75/17, complete genome Length = 15690 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccc 217 ||||||||||| |||||||||||||| Sbjct: 6069 acaaaaataacccatgttgatctccc 6094
>gb|AF112188.1|AF112188 Canine distemper virus fusion protein (F) mRNA, complete cds Length = 2095 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccc 217 ||||||||||| |||||||||||||| Sbjct: 1220 acaaaaataacccatgttgatctccc 1245
>gb|L07075.1|PCNFUSION Phocine distemper virus-2 fusion protein (F gene) mRNA sequence Length = 2156 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgatctccc 217 |||| ||||||||||||||||||||| Sbjct: 1220 acaagaataactcatgttgatctccc 1245
>gb|AC154045.1| Drosophila melanogaster clone BACR34K23, complete sequence Length = 163868 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 tagtataaacatgctgggaca 97 ||||||||||||||||||||| Sbjct: 45415 tagtataaacatgctgggaca 45435
>gb|AC136448.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0077O14, complete sequence Length = 124915 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 acaccacaccacatcctcaca 194 ||||||||||||||||||||| Sbjct: 100540 acaccacaccacatcctcaca 100520
>gb|AY386316.1| Canine distemper virus strain 5804P, complete genome Length = 15690 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgat 212 ||||||||||||||||||||| Sbjct: 6069 acaaaaataactcatgttgat 6089
>gb|AY386315.1| Canine distemper virus strain 5804, complete genome Length = 15690 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgat 212 ||||||||||||||||||||| Sbjct: 6069 acaaaaataactcatgttgat 6089
>gb|AC169374.2| Sorghum bicolor clone SB_BBc0019I06, complete sequence Length = 129695 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 tcacaaaaataactcatgttg 210 ||||||||||||||||||||| Sbjct: 91409 tcacaaaaataactcatgttg 91429
>gb|AF355188.1| Canine distemper virus DOG/DK 91C fusion protein (F) gene, partial cds Length = 1593 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 acaaaaataactcatgttgat 212 ||||||||||||||||||||| Sbjct: 739 acaaaaataactcatgttgat 759
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 acaccacaccacatcctcaca 194 ||||||||||||||||||||| Sbjct: 10615292 acaccacaccacatcctcaca 10615312
>gb|AC158510.2| Mus musculus BAC clone RP24-236E11 from chromosome 9, complete sequence Length = 178963 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 atgtctccacaccacaccaca 186 ||||||||||||||||||||| Sbjct: 140011 atgtctccacaccacaccaca 139991
>gb|AC010027.6| Drosophila melanogaster 3L BAC RP98-22B15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 168059 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 tagtataaacatgctgggaca 97 ||||||||||||||||||||| Sbjct: 144837 tagtataaacatgctgggaca 144857
>gb|AE002656.4| Drosophila melanogaster chromosome 3L, section 82 of 83 of the complete sequence Length = 203636 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 tagtataaacatgctgggaca 97 ||||||||||||||||||||| Sbjct: 179398 tagtataaacatgctgggaca 179418
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 acaccacaccacatcctcaca 194 ||||||||||||||||||||| Sbjct: 10686836 acaccacaccacatcctcaca 10686856
>gb|DQ234387.1| Canine distemper virus isolate SD-1 fusion protein (F) mRNA, partial cds Length = 972 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 caaaaataactcatgttgat 212 |||||||||||||||||||| Sbjct: 533 caaaaataactcatgttgat 552
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 actcatgttgatctccctaa 220 |||||||||||||||||||| Sbjct: 122402 actcatgttgatctccctaa 122421
>emb|CR954970.9| Mouse DNA sequence from clone RP23-402J24 on chromosome X, complete sequence Length = 99959 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 tgttgatctccctaatcaat 225 |||||||||||||||||||| Sbjct: 34168 tgttgatctccctaatcaat 34187
>emb|Y12328.1|CADNAPOLI C.aurantiacus polA gene for DNA polymerase I Length = 3952 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 tcacgccgaacaccaccgtc 380 |||||||||||||||||||| Sbjct: 2598 tcacgccgaacaccaccgtc 2579
>gb|AC079409.30| Homo sapiens 12q BAC RP11-423L22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 99923 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 acttttcttccttacaaagt 50 |||||||||||||||||||| Sbjct: 94559 acttttcttccttacaaagt 94578
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tgattgatctcgtgtgatgt 169 |||||||||||||||||||| Sbjct: 15430999 tgattgatctcgtgtgatgt 15431018
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 cagagcgccggcgccgagca 324 |||||||||||||||||||| Sbjct: 1629504 cagagcgccggcgccgagca 1629485
>gb|AE004680.1| Pseudomonas aeruginosa PAO1, section 241 of 529 of the complete genome Length = 12370 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 agcgccggcgccgagcaata 327 |||||||||||||||||||| Sbjct: 9952 agcgccggcgccgagcaata 9971
>gb|AC016681.2|AC016681 Homo sapiens BAC clone RP11-62H15 from Y, complete sequence Length = 68726 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 616 gctttgtgtactgctgatta 635 |||||||||||||||||||| Sbjct: 46738 gctttgtgtactgctgatta 46719
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 536 aggctggctattgccgaatt 555 |||||||||||||||||||| Sbjct: 1228943 aggctggctattgccgaatt 1228962
>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0613F06 Length = 184289 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tgattgatctcgtgtgatgt 169 |||||||||||||||||||| Sbjct: 98514 tgattgatctcgtgtgatgt 98533
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 362 cacgccgaacaccaccgtcgcccc 385 ||||||||||| |||||||||||| Sbjct: 1876874 cacgccgaacagcaccgtcgcccc 1876897
>gb|AC073434.42| Mus musculus strain C57BL/6J chromosome 9 clone rp23-159l13, complete sequence Length = 184073 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 gtagaagacataggccagagcagc 298 |||||||||| ||||||||||||| Sbjct: 79668 gtagaagacagaggccagagcagc 79691
>emb|AL590492.7| Human DNA sequence from clone RP11-88H5 on chromosome X, complete sequence Length = 129357 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 616 gctttgtgtactgctgatta 635 |||||||||||||||||||| Sbjct: 87951 gctttgtgtactgctgatta 87932
>gb|J05506.1|HUMCERPA Human ceruloplasmin (CP) gene, partial cds Length = 582 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 caatatcctgagctgaacat 342 |||||||||||||||||||| Sbjct: 126 caatatcctgagctgaacat 145 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,726,835 Number of Sequences: 3902068 Number of extensions: 4726835 Number of successful extensions: 84187 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83901 Number of HSP's gapped (non-prelim): 286 length of query: 663 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 640 effective length of database: 17,143,297,704 effective search space: 10971710530560 effective search space used: 10971710530560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)